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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001391 ID=TCONS_00001391|Name=TCONS_00001391|organism=Clytia hemisphaerica|type=transcript|length=2117bp
TTCATTGAATAGCAAAACTAAGTGTGTTGCCATAAAGATGTCATAATAAG
AATGAAACAGTTTATTAACAACCTAAGACAAgttaaaaaatcactttttt
ataTCTACATACTTTTTCTACACTTTCATAGTCACGTTAACACACAAATC
AGACTTTTGAGAAGATTACTTACTTTCAAGGAAAATCTTTGAATGAATCT
TTCAATTATGCTCTTATGGTCTATTGTTGTccaatttttattgttttacc
CCGCACAAGGCGTTTATGGGGGTTTTAAATTTACTAAAACGCTAAAAAAT
CGCAAACTTAGCGGTTTCAAACATTTGTTTCAAAGTGATGTGCGTTCTGG
AGGGAAATGCGCGATGTTGTGTTCTGGTGATAAAAAATGTCATTCGGTAA
ATTATCACCAGGAAAATACAGAATGCATGTTGAATTTTGAGGTGGTTGGG
AATAATGTTGAAGAAAATTTGGAAGTTGAAGATGGTTGGGTTTATTATGA
GAAAAGTGAAGACACTGAACCAATTGTAGCCAAAACGAGCAGCAAGTTTG
ATTACACTGGTGTTGCGTTCAGGGCAAAGAAGAACAATTTGGTACACATC
ATTCCATTCATTGGCAAAGAATTCACATTCGAATTCAACTTCACTTACTT
CACTACTGACAGCTCTGTAGAATACTCGTGCGCTTTATTGTGTACAACGT
TTTCTGCTTGGACGGAAAGATATCCTGCTATTTGGATCATGCCAGGCGGA
TTAGTTCAATTTGAAGTGTCTTATGATGTTGAGCAAACTAAGCCAACTAA
AACACTTATTGCAAAAAATAAGGTACGCGAACCAAACCAAAAATACAACA
TGCTGGTTTCATCAACTTACGATTCTACCTCTGGAAAATACAAGTTCATT
TTTAAAGTGGATGGAGTCATAGAGACCTCTACCACAGTCAGTGACGTGCC
AGAATTTCAGAATCTAAAATGCTATGTCGGCGACCCTGGCCATACACCAT
CGTATGCCGTCATCGAAGACTTCAAATTCAAACCGGAAGgtcaataaata
ttttcaaacccTATTGGGACGTTTTTGATAAAAGTATATCACAATTGTGC
TTAAATTCTGCGTCGCTTATCGGGTTTGTTGGTGCATTCTTTTATCTATT
TACTctatttaaccctattcgtactggGGGATGGCTTCTTCTGTTTAGCG
GGGAAACAAATGCTTATAGCTCCTAACATGATAGATCTTTTGGCAtgaat
ttctattttatttagcttcaaaataaaaaaaaattgacacgcCTTGTCAG
CATATTGTCATTTCTGAATGAAAGGTGTATGTTGTAAAAATTGACATATT
TTCagtataaatttatttttcaaatcacatacacgctttttttataagaa
tatcttctataagaatatcagggtgaaaattggccaaatcgtaagaatac
cctaaaaATACCCTCtaggttgaatttcaaaaaatttgataagaatacag
tcattttgtatttggctAACAGAAAAAACTGCATTTGTTAGAGATAGAAT
GAAGCTTTaaggaagaaatgtaattttaacccaaatatTCACTCAAAGTC
CAAAGTTTTCAAATTGATTATTTCTCAtgcttgttaaaagtcaagtctaa
aaaagtaagaatactttaagaatatttcaccctcaactttggcactttct
taagaacatttgaccctcatccaaagtatactattcttataaaaaaatgc
gtGTATACTGTtcaaaccgtaatttattgaatatttaggataaaataaac
ttcgaacttttttctaaagcctttgtttcGTCCTTTGAGAGAACAGAGGA
AAGACTATCTTATATACTCTAATCTAACAAAAATGTCGTTTGCTGACGGA
ATATCAATAGTCGCGTCTTCTTTAAGAAATATCTGCTTTTCCTTTTTCAG
AGGAATGTATAtgctaaattttgactttgggtCATCTTTTTGTTGAGGAT
ATACTCCACTTTTTGCTACTTCACATGCGTACGCGTGCGCAGAGAGTCAG
ACTATCGGGCTTTTATGTCGAttccagatgagatggagtttttataacat
actttaataattggcca Run BLAST on NCBI protein sequence of TCONS_00001391-protein >TCONS_00001391-protein ID=TCONS_00001391-protein|Name=TCONS_00001391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MNLSIMLLWSIVVQFLLFYPAQGVYGGFKFTKTLKNRKLSGFKHLFQSDV
RSGGKCAMLCSGDKKCHSVNYHQENTECMLNFEVVGNNVEENLEVEDGWV
YYEKSEDTEPIVAKTSSKFDYTGVAFRAKKNNLVHIIPFIGKEFTFEFNF
TYFTTDSSVEYSCALLCTTFSAWTERYPAIWIMPGGLVQFEVSYDVEQTK
PTKTLIAKNKVREPNQKYNMLVSSTYDSTSGKYKFIFKVDGVIETSTTVS
DVPEFQNLKCYVGDPGHTPSYAVIEDFKFKPEGQ Run BLAST on NCBI transcript from alignment at sc0000010:958022..961402+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001391 ID=TCONS_00001391|Name=TCONS_00001391|organism=Clytia hemisphaerica|type=transcript|length=3381bp|location=Sequence derived from alignment at sc0000010:958022..961402+ (Clytia hemisphaerica)
TTCATTGAATAGCAAAACTAAGTGTGTTGCCATAAAGATGTCATAATAAG
AATGAAACAGTTTATTAACAACCTAAGACAAgttaaaaaatcactttttt
ataTCTACATACTTTTTCTACACTTTCATAGTCACGTTAACACACAAATC
AGACTTTTGAGAAGATTACTTACTTTCAAGGAAAATCTTTGAATGAATCT
TTCAATTATGCTCTTATGGTCTATTGTTGTccaatttttattgttttacc
CCGCACAAGGCGTTTATGGGGGTTTTAAATTTACTAAAACGCTAAAAAAT
CGCAAACTTAGCGGTTTCAAACATTTGTTTCAAAGTGATGTGCGTTCTGG
AGGGAAATGCGCGATGTTGTGTTCTGGTGATAAAAAATGTCATTCGGTAA
ATTATCACCAGGAAAATACAGAATGCATGTTGAATTTTGAGGTGGTTGGG
AATAATGTTGAAGAAAATTTGGAAGTTGAAGATGGTTGGGTTTATTATGA
GAAAAGTGAAGTAAGTTTATGCCACTGTGATATCTGCTGCTAAGCTAGAC
TCAATTCTTTTATGCTTTGGATGCAGGCTATGCCACTAAAATGGAGTCCT
TATACCCATAGTGAATCTTGTTTGATCGGTGATAAAtttagacaggagac
ccgtcctgtatttttataatctgatgtatacaggatgTTTACGACCTGTG
AGacagatttctgcctcaaaaaatttacagtgggaaattcaaATTTAGCG
CTGTcttcacttactaaaataaaaatcaaatttcggaacttgtgctttct
ctaagaaagtgtgaccagtaaaagaataacaaaatttgattggttatgtt
ttcaaccgttattaggatctgggaaattcaaactctcagcccataccatg
ctatatatttcgacatcagtatatagaataagaaatcatagcatgggtCT
CCAGGCTACGATAAATTAGCCTCAAAACTTCACCTAATCGGTGACACAAG
GGAAATCATCTTTGTTACATATACTTTTCAGTAGAGCAAAGACAAGGTGG
gagcaaaatttgtgtaggagagcagaattttatgataattataATGATTT
TaggataattactgtgtcataaaaatctgcccTTCTACAGAGATTTCACG
CCCCCCCCCTTGTCTACGCCACTGCTTTCTTTCTTTAGGACACTGAACCA
ATTGTAGCCAAAACGAGCAGCAAGTTTGATTACACTGGTGTTGGTAAGTC
TTATTTAATTTGATGTTGAAGTGAAGCTAAAATACTCAAAGTGAAGCGTA
AAATCTTTGATTAACTGTTTTGCTGTTTTCGTGCGGGGGAGGGGTACCAG
GTACCAGATGATTTGACCAGATATGTGTTAGCGttcgaaaatctttcaaa
taatttgaaaatctactcattctttaaaggttttgtttttaagtaagagt
gatatcatttgtttactcatcaattttaattcacaagcttttgcacattg
aattgacacggatgtggagcaagattagtcaaaaagaggaaaagaaaaac
atttttttgcttgtatcaAAATagtataacaataggcagacactgtcctg
atatgaaatatatgtgtctgatatgaaacgggagcaCTTATGTAAAGATA
AAAGGTTTGCGCTCAACATTGGTGGGTATATATTAGGGTATATATTAGTT
TATAAACATCCTGTCGTACAAGAAGGTaaccagccggcacacaacgttat
ttcaacgtccatataacgttagaagaacgttaaaacaacgttgtgtgcca
gctgggtaagaAATGTCTTTTCTCTACAGCGTTCAGGGCAAAGAAGAACA
ATTTGGTACACATCATTCCATTCATTGGCAAAGAATTCACATTCGAATTC
AACTTCACTTACTTCACTACTGACAGCTCTGTAGAATACTCGTGCGCTTT
ATTGTGTACAACGTTTTCTGCTTGGACGGAAAGATATCCTGCTATTTGGA
TCATGCCAGGCGGATTAGTTCAATTTGAAGTGTCTTATGATGTTGAGCAA
ACTAAGCCAACTAAAACACTTATTGCAAAAAATAAGGTACGCGAACCAAA
CCAAAAATACAACATGCTGGTTTCATCAACTTACGATTCTACCTCTGGAA
AATACAAGTTCATTTTTAAAGTGGATGGAGTCATAGAGACCTCTACCACA
GTCAGTGACGTGCCAGAATTTCAGAATCTAAAATGCTATGTCGGCGACCC
TGGCCATACACCATCGTATGCCGTCATCGAAGACTTCAAATTCAAACCGG
AAGgtcaataaatattttcaaacccTATTGGGACGTTTTTGATAAAAGTA
TATCACAATTGTGCTTAAATTCTGCGTCGCTTATCGGGTTTGTTGGTGCA
TTCTTTTATCTATTTACTctatttaaccctattcgtactggGGGATGGCT
TCTTCTGTTTAGCGGGGAAACAAATGCTTATAGCTCCTAACATGATAGAT
CTTTTGGCAtgaatttctattttatttagcttcaaaataaaaaaaaattg
acacgcCTTGTCAGCATATTGTCATTTCTGAATGAAAGGTGTATGTTGTA
AAAATTGACATATTTTCagtataaatttatttttcaaatcacatacacgc
tttttttataagaatatcttctataagaatatcagggtgaaaattggcca
aatcgtaagaataccctaaaaATACCCTCtaggttgaatttcaaaaaatt
tgataagaatacagtcattttgtatttggctAACAGAAAAAACTGCATTT
GTTAGAGATAGAATGAAGCTTTaaggaagaaatgtaattttaacccaaat
atTCACTCAAAGTCCAAAGTTTTCAAATTGATTATTTCTCAtgcttgtta
aaagtcaagtctaaaaaagtaagaatactttaagaatatttcaccctcaa
ctttggcactttcttaagaacatttgaccctcatccaaagtatactattc
ttataaaaaaatgcgtGTATACTGTtcaaaccgtaatttattgaatattt
aggataaaataaacttcgaacttttttctaaagcctttgtttcGTCCTTT
GAGAGAACAGAGGAAAGACTATCTTATATACTCTAATCTAACAAAAATGT
CGTTTGCTGACGGAATATCAATAGTCGCGTCTTCTTTAAGAAATATCTGC
TTTTCCTTTTTCAGAGGAATGTATAtgctaaattttgactttgggtCATC
TTTTTGTTGAGGATATACTCCACTTTTTGCTACTTCACATGCGTACGCGT
GCGCAGAGAGTCAGACTATCGGGCTTTTATGTCGAttccagatgagatgg
agtttttataacatactttaataattggcca Coding sequence (CDS) from alignment at sc0000010:958022..961402+ >TCONS_00001391 ID=TCONS_00001391|Name=TCONS_00001391|organism=Clytia hemisphaerica|type=CDS|length=2565bp|location=Sequence derived from alignment at sc0000010:958022..961402+ (Clytia hemisphaerica)
ATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaatttttatt
gttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTACTAAAACGC
TAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAAGTGATGTG
CGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAAAAATGTCA
TTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAATTTTGAGG
TGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATGGTTGGGTT
TATTATGAGAAAAGTGAAGACACTGAACCAATTGTAGCCAAAACGAGCAG
CAAGTTTGATTACACTGGTGTTGCGTTCAGGGCAAAGAAGAACAATTTGG
TACACATCATTCCATTCATTGGCAAAGAATTCACATTCGAATTCAACTTC
ACTTACTTCACTACTGACAGCTCTGTAGAATACTCGTGCGCTTTATTGTG
TACAACGTTTTCTGCTTGGACGGAAAGATATCCTGCTATTTGGATCATGC
CAGGCGGATTAGTTCAATTTGAAGTGTCTTATGATGTTGAGCAAACTAAG
CCAACTAAAACACTTATTGCAAAAAATAAGGTACGCGAACCAAACCAAAA
ATACAACATGCTGGTTTCATCAACTTACGATTCTACCTCTGGAAAATACA
AGTTCATTTTTAAAGTGGATGGAGTCATAGAGACCTCTACCACAGTCAGT
GACGTGCCAGAATTTCAGAATCTAAAATGCTATGTCGGCGACCCTGGCCA
TACACCATCGTATGCCGTCATCGAAGACTTCAAATTCAAACCGGAAGgtc
aataaATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaattt
ttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTACTAA
AACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAAGTG
ATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAAAAA
TGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAATTT
TGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATGGTT
GGGTTTATTATGAGAAAAGTGAAGACACTGAACCAATTGTAGCCAAAACG
AGCAGCAAGTTTGATTACACTGGTGTTGCGTTCAGGGCAAAGAAGAACAA
TTTGGTACACATCATTCCATTCATTGGCAAAGAATTCACATTCGAATTCA
ACTTCACTTACTTCACTACTGACAGCTCTGTAGAATACTCGTGCGCTTTA
TTGTGTACAACGTTTTCTGCTTGGACGGAAAGATATCCTGCTATTTGGAT
CATGCCAGGCGGATTAGTTCAATTTGAAGTGTCTTATGATGTTGAGCAAA
CTAAGCCAACTAAAACACTTATTGCAAAAAATAAGGTACGCGAACCAAAC
CAAAAATACAACATGCTGGTTTCATCAACTTACGATTCTACCTCTGGAAA
ATACAAGTTCATTTTTAAAGTGGATGGAGTCATAGAGACCTCTACCACAG
TCAGTGACGTGCCAGAATTTCAGAATCTAAAATGCTATGTCGGCGACCCT
GGCCATACACCATCGTATGCCGTCATCGAAGACTTCAAATTCAAACCGGA
AGgtcaataaATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTcc
aatttttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTT
ACTAAAACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCA
AAGTGATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATA
AAAAATGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTG
AATTTTGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGA
TGGTTGGGTTTATTATGAGAAAAGTGAAGACACTGAACCAATTGTAGCCA
AAACGAGCAGCAAGTTTGATTACACTGGTGTTGCGTTCAGGGCAAAGAAG
AACAATTTGGTACACATCATTCCATTCATTGGCAAAGAATTCACATTCGA
ATTCAACTTCACTTACTTCACTACTGACAGCTCTGTAGAATACTCGTGCG
CTTTATTGTGTACAACGTTTTCTGCTTGGACGGAAAGATATCCTGCTATT
TGGATCATGCCAGGCGGATTAGTTCAATTTGAAGTGTCTTATGATGTTGA
GCAAACTAAGCCAACTAAAACACTTATTGCAAAAAATAAGGTACGCGAAC
CAAACCAAAAATACAACATGCTGGTTTCATCAACTTACGATTCTACCTCT
GGAAAATACAAGTTCATTTTTAAAGTGGATGGAGTCATAGAGACCTCTAC
CACAGTCAGTGACGTGCCAGAATTTCAGAATCTAAAATGCTATGTCGGCG
ACCCTGGCCATACACCATCGTATGCCGTCATCGAAGACTTCAAATTCAAA
CCGGAAGgtcaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001391-exon-sc0000010-1491911889:958022..958531 | TCONS_00001391-exon-sc0000010-1491911889:958022..958531 | Clytia hemisphaerica | exon |
| TCONS_00001391-exon-sc0000010-1510915933:958022..958531 | TCONS_00001391-exon-sc0000010-1510915933:958022..958531 | Clytia hemisphaerica | exon |
| TCONS_00001391-exon-sc0000010-1575043694:958022..958531 | TCONS_00001391-exon-sc0000010-1575043694:958022..958531 | Clytia hemisphaerica | exon |
| TCONS_00001391-exon-sc0000010-1491911889:959210..959264 | TCONS_00001391-exon-sc0000010-1491911889:959210..959264 | Clytia hemisphaerica | exon |
| TCONS_00001391-exon-sc0000010-1510915933:959210..959264 | TCONS_00001391-exon-sc0000010-1510915933:959210..959264 | Clytia hemisphaerica | exon |
| TCONS_00001391-exon-sc0000010-1575043694:959210..959264 | TCONS_00001391-exon-sc0000010-1575043694:959210..959264 | Clytia hemisphaerica | exon |
| TCONS_00001391-exon-sc0000010-1491911889:959851..961402 | TCONS_00001391-exon-sc0000010-1491911889:959851..961402 | Clytia hemisphaerica | exon |
| TCONS_00001391-exon-sc0000010-1510915933:959851..961402 | TCONS_00001391-exon-sc0000010-1510915933:959851..961402 | Clytia hemisphaerica | exon |
| TCONS_00001391-exon-sc0000010-1575043694:959851..961402 | TCONS_00001391-exon-sc0000010-1575043694:959851..961402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:958022..961402 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
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