TCONS_00015456 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015456
Unique NameTCONS_00015456
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015456 ID=TCONS_00015456|Name=TCONS_00015456|organism=Clytia hemisphaerica|type=transcript|length=1229bp
TGAGAACGACAATTTTATAAAATGTTTCAGATGATATTCAGTAGATTGAC
AGAGAAGACATTAAAAAACCTTGATTCTTTCATCGAACGTTTCATGATAA
ACTAAACCTGTTATCTGAGAAGAGATACTGTGACACAAGGTATATCAAAT
AGAATGTCAAAAGGAAACAACAACAATACTATGAAATCACCATCCTCAAC
ACCCACCACCAACATGCGACAATTATGGGATTTCACACAACAACCTGACA
TCATTTTACAAGTGGAGAACCAGGACAtttttgctcacaaatcaaTTCTC
TGCAATGCTTCACCTGTCTTTAAAGTCATGTTAGAATCGGAACATTTCAT
GGAGAAAAACATGTCTAAAATTATTCTCCCATTCAAAAGGATTGCGGACG
TTCAACAGTTACTCAATTTCATTTACCCCTTTGGACATCAAATTTCAGAA
AGTACAAATTTCGAAAGTCTGTTGGATCTTTCTCGCGAATACCAAATCGA
CGACATCAAAAATATTTGCGAGACACACCTTCTTCGTAAACCACCCTCCA
TTGAGCAGCTCATTACCGCTGAAGAATACAACATGGAAAATCTTCGTCAA
AAATGTCTGAAGGAACTCTCGGAGAAAGCGCTGAACGGATTGCAAGAGCA
TCCACGTTTTGGTGAAATCAGTGATCAAACCAAGCTTGCCATTATGGAAC
AGCAATTGAAACGATTACAGAATTATTGTCGAAAGATTTCGCAGATAGCA
CATGCGTCAGATATGAGgtACATGCCAATCATCACACATGTGAATTGTGG
TCATCGACCCAAAAATTGCAACAACCCACATttcatttgtcaaatttgtc
gcGCGTCCGCTCTAAGATCTTACGTCAAAGGAGAAAGTTGGAAACTTGGG
CTCGataagaaatttatttaaaacatGTACATGTATATATTACTCTGCGA
CTGATCGAAAAATTtcgctttttgaaattttcagatattCGTCACTTTTC
AAGTTCAGTTTGCAAATAATTCCTTTAAAAATCCTTCGCATATGTCTTTC
TACATcatattttaacttttaaatttttaaataaattcttaactttaaat
tattttttatcacTTGTAAGtagaattttttattatttttgaaataaatt
tagaGAACAGATGAAGCTTCTCATGTCACTTTGAGTCATCAGGTTGGTTG
AACGGCTCTCGAGTGCTGCTTATTGAACC
Run BLAST on NCBI

protein sequence of TCONS_00015456-protein

>TCONS_00015456-protein ID=TCONS_00015456-protein|Name=TCONS_00015456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MSKGNNNNTMKSPSSTPTTNMRQLWDFTQQPDIILQVENQDIFAHKSILC
NASPVFKVMLESEHFMEKNMSKIILPFKRIADVQQLLNFIYPFGHQISES
TNFESLLDLSREYQIDDIKNICETHLLRKPPSIEQLITAEEYNMENLRQK
CLKELSEKALNGLQEHPRFGEISDQTKLAIMEQQLKRLQNYCRKISQIAH
ASDMRYMPIITHVNCGHRPKNCNNPHFICQICRASALRSYVKGESWKLGL
DKKFI
Run BLAST on NCBI

transcript from alignment at sc0000211:69590..73493-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015456 ID=TCONS_00015456|Name=TCONS_00015456|organism=Clytia hemisphaerica|type=transcript|length=3904bp|location=Sequence derived from alignment at sc0000211:69590..73493- (Clytia hemisphaerica)
TGAGAACGACAATTTTATAAAATGTTTCAGATGATATTCAGTAGATTGAC
AGAGAAGACATTAAAAAACCTTGATTCTTTCATCGAACGTTTCATGATAA
ACTAAACCTGTTATCTGAGAAGAGATACTGTGACACAAGGTATATCAAAT
AGAATGTCAAAAGGAAACAACAACAATACTATGAAATCACCATCCTCAAC
ACCCACCACCAACATGCGACAATTATGGGATTTCACACAACAACCTGACA
TCATTTTACAAGTGGAGAACCAGGACATTTTTGCTCACAAATCAATTCTC
TGCAATGCTTCACCTGTCTTTAAAGTCATGTTAGAATCGGAACATTTCAT
GGAGAAAAACATGTCTAAAATTATTCTCCCATTCAAAAGGATTGCGGACG
TTCAACAGTTACTCAATTTCATTTACCCCTTTGGACATCAAATTTCAGGT
AAATCTCATCTGTCCTGTTTCTTCAGTTTAAAGGCTTAATTTTTTAAATT
TGTGCGATTCGCAGCTTTTGAAATACATACATGTTATAATATTTTTGCTG
TAAGAACGCTGCAATCTTTACGCCTAAACCACTAAGAAAGATTTTTATAC
TAAGAAATACTAAAAAAATATACACTCTTTGAACAATTTTAGGCTCAAAA
CTCTAAAAATGGGCTCTTCCAGAAAAAAATTGTACATGGGGGGTGGAGGA
TATATTGTCCAGGGGGTAGCGAAAAATCATCAAAATTTGCCTTGTCCGGG
GGGTAAATTTGCTCTGTCCGGGGGTAATTTTGGTTGTCCGGGGGGTTACC
TGATGCTTGTCCAGGGGTAAAACCCATTGTCCCGGGGGCCAAAAGCCACT
TTGTCCGGGGGTAAATCACTGAAAATTGTTATATCCTCCACCCCCCCCCA
TGTACAATTTTTTTCTGGAAAAGCCCAATCTAAGTAATCCAAAGACTGTT
TGACGTTCTAAAGAAGCTGTACATTGTATTATTTCCTTAATCGCATCCTT
TGATTTGGTTTCTAAAAGTGATTAGCATCATAATTATTTTATTTTCCCAC
TTTTTAGAAAGTACAAATTTCGAAAGTCTGTTGGATCTTTCTCGCGAATA
CCAAATCGACGACATCAAAAATATTTGCGAGACACACCTTCTTCGTAAAC
CACCCTCCATTGAGCAGCTCATTACCGCTGAAGAATACAACATGGAAAAT
CTTCGTCAAAAATGTCTGAAGGAACTCTCGGAGAAAGCGCTGAACGGATT
GCAAGAGCATCCACGTTTTGGTGAAATCAGTGATCAAACCAAGCTTGCCA
TTATGGAACAGCAATTGAAACGATTACAGAATTATTGTCGAAAGATTTCG
CAGATAGCACATGCGTCAGATATGAGGTAAGAGATATGTTCTTTATGGTA
TCAGTCTATTCCTCTAAAGAATCCTGCATTTTAACACGCATGCGTAATTC
GTCGTTCTTTTAAACCACATGTAGTTAATTCCCGTGATAAACGAAGGGGA
ATGAATCGCTAGGACCGGGTCGGGGTTGTGGACGTCGTTTTTTATGAAAT
TTGTTGTTCTTTTTGTCTAATTTTAGTAATGCAGGATTCTCTATACAGTA
TGTGGCCCCCAAAACGGCGATCAAATTTGAAGTTTCTCTCAAATCTAGAG
AAAAAGAGGTTTTACAAAAATTTTTGCTGCATGAAAACCTTTAACATCTC
TACTTTATTTCCTGGAAGTTCTTTTTCANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTTTAATTCTGAT
AAATCTACAAGTCAGAATCTTCATTTCAATGAAAACCTCCGTTTTGGGGG
CCGTCTCCGTTTTGGGGGCCATATACTGTATATTTCTTCTGTACTTTTGT
ATCTATTTGGAAAAGAGTGCCTCTGATGAACAACGGAATACACACATCCA
GGCATATCTCCCCATACACTATTATATAAGAGCGTGGTACCCAATGACTC
TCGCATGGCATTGGTTGACCCATAGTCATTATAAAAACCCCGGTCTGGCA
ATGTATTGTTTTAGCTTTTTGTTCAATTTTCTTTTGTTACAAACAAAAGA
CAACTTTTTGATCACGTTACTAAAATCTCTTGTTGGGATTGGTCTATTTT
CTAATCACATGATTAAAAAGTTTGCAAAATAAATCGATTTGGGTACGTAT
GCTCTATCTTTTAACAATAAAAAGAGACAAAAGCCTTCCAGACCAGTGTT
TTTATAATGACTATGGTTGACCCGAGCAAAGGTACACTCACTTGTCAAGT
GAATCACAGCACCGAGTAGGCGAATTAGACCCCTCTGCATGGAAGTTAAG
GCTTGAACTACACTAAAAAGGTCAAGTGGCTTTATTGAGCCATAAATTTG
GATAATGAAAGATGTATAACTAATTTCCTTTTCTATTTTCAGGTACATGC
CAATCATCACACATGTGAATTGTGGTCATCGACCCAAAAATTGCAACAAC
CCACATTTCATTTGTCAAATTTGTCGCGCGTCCGCTCTAAGATCTTACGT
CAAAGGAGAAAGTTGGAAACTTGGGCTCGATAAGAAATTTATTTAAAACA
TGTACATGTATATATTACTCTGCGACTGATCGAAAAATTTCGCTTTTTGA
AATTTTCAGATATTCGTCACTTTTCAAGTTCAGTTTGCAAATAATTCCTT
TAAAAATCCTTCGCATATGTCTTTCTACATCATATTTTAACTTTTAAATT
TTTAAATAAATTCTTAACTTTAAATTATTTTTTATCACTTGTAAGTAGAA
TTTTTTATTATTTTTGAAATAAATTTAGAGAACAGATGAAGCTTCTCATG
TCACTTTGAGTCATCAGGTTGGTTGAACGGCTCTCGAGTGCTGCTTATTG
AACC

Coding sequence (CDS) from alignment at sc0000211:69590..73493-

>TCONS_00015456 ID=TCONS_00015456|Name=TCONS_00015456|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at sc0000211:69590..73493- (Clytia hemisphaerica)
GTACATGCCAATCATCACACATGTGAATTGTGGTCATCGACCCAAAAATT
GCAACAACCCACATTTCATTTGTCAAATTTGTCGCGCGTCCGCTCTAAGA
TCTTACGTCAAAGGAGAAAGTTGGAAACTTGGGCTCGATAAGAAATTTAT
TTAAAAAGTACAAATTTCGAAAGTCTGTTGGATCTTTCTCGCGAATACCA
AATCGACGACATCAAAAATATTTGCGAGACACACCTTCTTCGTAAACCAC
CCTCCATTGAGCAGCTCATTACCGCTGAAGAATACAACATGGAAAATCTT
CGTCAAAAATGTCTGAAGGAACTCTCGGAGAAAGCGCTGAACGGATTGCA
AGAGCATCCACGTTTTGGTGAAATCAGTGATCAAACCAAGCTTGCCATTA
TGGAACAGCAATTGAAACGATTACAGAATTATTGTCGAAAGATTTCGCAG
ATAGCACATGCGTCAGATATGAGATGTCAAAAGGAAACAACAACAATACT
ATGAAATCACCATCCTCAACACCCACCACCAACATGCGACAATTATGGGA
TTTCACACAACAACCTGACATCATTTTACAAGTGGAGAACCAGGACATTT
TTGCTCACAAATCAATTCTCTGCAATGCTTCACCTGTCTTTAAAGTCATG
TTAGAATCGGAACATTTCATGGAGAAAAACATGTCTAAAATTATTCTCCC
ATTCAAAAGGATTGCGGACGTTCAACAGTTACTCAATTTCATTTACCCCT
TTGGACATCAAATTTCAGGTACATGCCAATCATCACACATGTGAATTGTG
GTCATCGACCCAAAAATTGCAACAACCCACATTTCATTTGTCAAATTTGT
CGCGCGTCCGCTCTAAGATCTTACGTCAAAGGAGAAAGTTGGAAACTTGG
GCTCGATAAGAAATTTATTTAAAAAGTACAAATTTCGAAAGTCTGTTGGA
TCTTTCTCGCGAATACCAAATCGACGACATCAAAAATATTTGCGAGACAC
ACCTTCTTCGTAAACCACCCTCCATTGAGCAGCTCATTACCGCTGAAGAA
TACAACATGGAAAATCTTCGTCAAAAATGTCTGAAGGAACTCTCGGAGAA
AGCGCTGAACGGATTGCAAGAGCATCCACGTTTTGGTGAAATCAGTGATC
AAACCAAGCTTGCCATTATGGAACAGCAATTGAAACGATTACAGAATTAT
TGTCGAAAGATTTCGCAGATAGCACATGCGTCAGATATGAGATGTCAAAA
GGAAACAACAACAATACTATGAAATCACCATCCTCAACACCCACCACCAA
CATGCGACAATTATGGGATTTCACACAACAACCTGACATCATTTTACAAG
TGGAGAACCAGGACATTTTTGCTCACAAATCAATTCTCTGCAATGCTTCA
CCTGTCTTTAAAGTCATGTTAGAATCGGAACATTTCATGGAGAAAAACAT
GTCTAAAATTATTCTCCCATTCAAAAGGATTGCGGACGTTCAACAGTTAC
TCAATTTCATTTACCCCTTTGGACATCAAATTTCAGGTACATGCCAATCA
TCACACATGTGAATTGTGGTCATCGACCCAAAAATTGCAACAACCCACAT
TTCATTTGTCAAATTTGTCGCGCGTCCGCTCTAAGATCTTACGTCAAAGG
AGAAAGTTGGAAACTTGGGCTCGATAAGAAATTTATTTAAAAAGTACAAA
TTTCGAAAGTCTGTTGGATCTTTCTCGCGAATACCAAATCGACGACATCA
AAAATATTTGCGAGACACACCTTCTTCGTAAACCACCCTCCATTGAGCAG
CTCATTACCGCTGAAGAATACAACATGGAAAATCTTCGTCAAAAATGTCT
GAAGGAACTCTCGGAGAAAGCGCTGAACGGATTGCAAGAGCATCCACGTT
TTGGTGAAATCAGTGATCAAACCAAGCTTGCCATTATGGAACAGCAATTG
AAACGATTACAGAATTATTGTCGAAAGATTTCGCAGATAGCACATGCGTC
AGATATGAGATGTCAAAAGGAAACAACAACAATACTATGAAATCACCATC
CTCAACACCCACCACCAACATGCGACAATTATGGGATTTCACACAACAAC
CTGACATCATTTTACAAGTGGAGAACCAGGACATTTTTGCTCACAAATCA
ATTCTCTGCAATGCTTCACCTGTCTTTAAAGTCATGTTAGAATCGGAACA
TTTCATGGAGAAAAACATGTCTAAAATTATTCTCCCATTCAAAAGGATTG
CGGACGTTCAACAGTTACTCAATTTCATTTACCCCTTTGGACATCAAATT
TCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008628XLOC_008628Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015456-proteinTCONS_00015456-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015456-exon-sc0000211-1575043694:73046..73493TCONS_00015456-exon-sc0000211-1575043694:73046..73493Clytia hemisphaericaexon
TCONS_00015456-exon-sc0000211-1575043694:72118..72436TCONS_00015456-exon-sc0000211-1575043694:72118..72436Clytia hemisphaericaexon
TCONS_00015456-exon-sc0000211-1575043694:69590..70051TCONS_00015456-exon-sc0000211-1575043694:69590..70051Clytia hemisphaericaexon
TCONS_00015456-exon-sc0000211-1510915933:73046..73493TCONS_00015456-exon-sc0000211-1510915933:73046..73493Clytia hemisphaericaexon
TCONS_00015456-exon-sc0000211-1510915933:72118..72436TCONS_00015456-exon-sc0000211-1510915933:72118..72436Clytia hemisphaericaexon
TCONS_00015456-exon-sc0000211-1510915933:69590..70051TCONS_00015456-exon-sc0000211-1510915933:69590..70051Clytia hemisphaericaexon
TCONS_00015456-exon-sc0000211-1491911889:73046..73493TCONS_00015456-exon-sc0000211-1491911889:73046..73493Clytia hemisphaericaexon
TCONS_00015456-exon-sc0000211-1491911889:72118..72436TCONS_00015456-exon-sc0000211-1491911889:72118..72436Clytia hemisphaericaexon
TCONS_00015456-exon-sc0000211-1491911889:69590..70051TCONS_00015456-exon-sc0000211-1491911889:69590..70051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:69590..73493 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.0259	13.8725	16.7768	18.5326	19.6065	13.5289	3.30912	4.47948	1.17241	6.35345	1.51527	0.486458	0.231325	0.600583	0	0.148367	0.261108	0.107051	0.961328	0.541671	0.47081	0.147629	58.1058	51.5214	0.224064	0.0666573	3.43391	4.58095	34.5519	39.6868
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015456 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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