TCONS_00015321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015321
Unique NameTCONS_00015321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015321 ID=TCONS_00015321|Name=TCONS_00015321|organism=Clytia hemisphaerica|type=transcript|length=399bp
GTTGATGAGGAACTGAGTCGAATGCTTTTGCAAAGTCAAAGTATATTGCG
TCTACGGCTTTACCGTTTCCAATATCTTCGGCGGAAGCATCTAGGTAGTT
TAGTAATTGTGTTACAGTTGACCTGCGGTTGATGAAGCCATGTTGTTTAC
TAGATAGTAATTTCTCTTGATCAAGATATGTCATAATATGGGTTTTGAGA
ATCTTTTCCATTATTCGGCATATAGATGTTAAACTGATTGGACGATAATT
TTCtgctatgtttttgtttccttttttatagACAGGTGATACGTTTGCAA
GTTTCCAGTCCTTCGGAAGACAACTctcattgaaagattttgtcatTATC
AGGAAAATCGGTTCTGCGATGTATTCGGCAAGCTCCTTGAGCATCCTTN
Run BLAST on NCBI

protein sequence of TCONS_00015321-protein

>TCONS_00015321-protein ID=TCONS_00015321-protein|Name=TCONS_00015321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
RMLKELAEYIAEPIFLIMTKSFNESCLPKDWKLANVSPVYKKGNKNIAEN
YRPISLTSICRIMEKILKTHIMTYLDQEKLLSSKQHGFINRRSTVTQLLN
YLDASAEDIGNGKAVDAIYFDFAKAFDSVPHQ
Run BLAST on NCBI

transcript from alignment at sc0000208:431416..431814

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015321 ID=TCONS_00015321|Name=TCONS_00015321|organism=Clytia hemisphaerica|type=transcript|length=399bp|location=Sequence derived from alignment at sc0000208:431416..431814 (Clytia hemisphaerica)
NAAGGATGCTCAAGGAGCTTGCCGAATACATCGCAGAACCGATTTTCCTG
ATAatgacaaaatctttcaatgagAGTTGTCTTCCGAAGGACTGGAAACT
TGCAAACGTATCACCTGTctataaaaaaggaaacaaaaacatagcaGAAA
ATTATCGTCCAATCAGTTTAACATCTATATGCCGAATAATGGAAAAGATT
CTCAAAACCCATATTATGACATATCTTGATCAAGAGAAATTACTATCTAG
TAAACAACATGGCTTCATCAACCGCAGGTCAACTGTAACACAATTACTAA
ACTACCTAGATGCTTCCGCCGAAGATATTGGAAACGGTAAAGCCGTAGAC
GCAATATACTTTGACTTTGCAAAAGCATTCGACTCAGTTCCTCATCAAC

Coding sequence (CDS) from alignment at sc0000208:431416..431814

>TCONS_00015321 ID=TCONS_00015321|Name=TCONS_00015321|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000208:431416..431814 (Clytia hemisphaerica)
AGGATGCTCAAGGAGCTTGCCGAATACATCGCAGAACCGATTTTCCTGAT
AatgacaaaatctttcaatgagAGTTGTCTTCCGAAGGACTGGAAACTTG
CAAACGTATCACCTGTctataaaaaaggaaacaaaaacatagcaGAAAAT
TATCGTCCAATCAGTTTAACATCTATATGCCGAATAATGGAAAAGATTCT
CAAAACCCATATTATGACATATCTTGATCAAGAGAAATTACTATCTAGTA
AACAACATGGCTTCATCAACCGCAGGTCAACTGTAACACAATTACTAAAC
TACCTAGATGCTTCCGCCGAAGATATTGGAAACGGTAAAGCCGTAGACGC
AATATACTTTGACTTTGCAAAAGCATTCGACTCAGTTCCTCATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008571XLOC_008571Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015321-proteinTCONS_00015321-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015321-exon-sc0000208-1491911889:431416..431814TCONS_00015321-exon-sc0000208-1491911889:431416..431814Clytia hemisphaericaexon
TCONS_00015321-exon-sc0000208-1510915933:431416..431814TCONS_00015321-exon-sc0000208-1510915933:431416..431814Clytia hemisphaericaexon
TCONS_00015321-exon-sc0000208-1575043694:431416..431814TCONS_00015321-exon-sc0000208-1575043694:431416..431814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:431416..431814 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12602	1.5047	1.90435	3.16732	3.86746	1.92868	1.22811	1.20367	1.41615	0.781745	4.41467	1.14162	1.69475	0.530739	0.56416	0.870421	1.31507	0.705906	0.894935	1.3315	1.26859	1.33009	0.620366	1.46456	1.24443	1.73157	1.77644	1.47039	1.05865	0.709322
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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