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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001378 ID=TCONS_00001378|Name=TCONS_00001378|organism=Clytia hemisphaerica|type=transcript|length=973bp
GAACTTTCGAAAAAAGCATTTTGTTGATAGGAATATTCAGTCAAGAAAAA
AGTCGTCTCTCGTGAAAATGTGGTTTCTTTTTATGTTCATCCCTTATGCA
ATTTGCGCAAGAATTTTTCCAACTCAAACTGCAATATCAACGAATGAAAA
CAGCAATATTACATTAGAATGGTCTTTGAAACCAATGCATGGAGAAATTG
CAGACTGGATATCCATTTTCCATCAATCTGATGAAAATTCTCTCATTCGA
CCGTTATGGCACGATTCTACTGGTTTGAcaaaatttggggaaaagaaatt
tcaagattCCTTTCGAGTAAATTACGCCAAGAATTTGAAGAAAGTTTCCG
CAATAAtaacaaacataaaagactCAATGATTGTTTATTTGACGGCTGTT
TTCATGGATAAAAACGGGCAAATTGTCAGTGGACCTATTTATTCCAAGTT
TAAAATTCGAGttGGTTACATTCAATTGACAGACAAACCAATTTGTTATG
GAGCACGAGACAAAACACCAGCTTCCTTTTCACTTCCTCTTGATGGTAAT
CTCAAAGCAATCAAGCTACGACACATCTCTGGCAGTGTACATTGTAGTGT
TAGGAGAATGAAGAACTATTGGGGCTGTAGAGCGTGCTGCAAGGGCACTT
TGATGACTATAATCACAAATTCCCTAGACAAAGCTATTATTCCATTAACA
GGAACCCACCCAAATTATCTAGATACTATCAGTCCAAATTATGGTGGGGT
CCTTGCTCCTGAATTAGTTCTCCCGGTACCCGTTGCTTCTAGGAGAGTCA
TCAAGGGCACATTGATGAAAATTTGGCATACAGAAGATTTATTCTTATCA
GGTGCAGGAGTGAATGACAATAGTGGCACTCACTGTGTTTTAGTTTTTGC
TATGTATTCGTAAAAACATTGTTTCAattaagtttgtttttttgttctcA
AAGGCATTTTCTTTGAGTTTAAA Run BLAST on NCBI protein sequence of TCONS_00001378-protein >TCONS_00001378-protein ID=TCONS_00001378-protein|Name=TCONS_00001378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
NFRKKHFVDRNIQSRKKSSLVKMWFLFMFIPYAICARIFPTQTAISTNEN
SNITLEWSLKPMHGEIADWISIFHQSDENSLIRPLWHDSTGLTKFGEKKF
QDSFRVNYAKNLKKVSAIITNIKDSMIVYLTAVFMDKNGQIVSGPIYSKF
KIRVGYIQLTDKPICYGARDKTPASFSLPLDGNLKAIKLRHISGSVHCSV
RRMKNYWGCRACCKGTLMTIITNSLDKAIIPLTGTHPNYLDTISPNYGGV
LAPELVLPVPVASRRVIKGTLMKIWHTEDLFLSGAGVNDNSGTHCVLVFA
MYS Run BLAST on NCBI transcript from alignment at sc0000010:730985..733128+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001378 ID=TCONS_00001378|Name=TCONS_00001378|organism=Clytia hemisphaerica|type=transcript|length=2144bp|location=Sequence derived from alignment at sc0000010:730985..733128+ (Clytia hemisphaerica)
GAACTTTCGAAAAAAGCATTTTGTTGATAGGAATATTCAGTCAAGAAAAA
AGTCGTCTCTCGTGAAAATGTGGTTTCTTTTTATGTTCATCCCTTATGGT
GAGTTTACATAAactaatacacccctgtgtcacagacccgcggGGACCCA
AGCCTCACTGGAAAATAGGGGAAATATTTCGTATCCGTTGAGACCTATGG
GAAAATACCCTCAAATTTTAGCCCCCCTggaaaatcgattttgatttcat
cACCATTCGAAAATTaatgtttagaaattgcacACTAAAtctatccccat
tggattttctaaccttggaacaatagaatttctaaccccatcgggatttc
aataggagtttttatccccactgagaaaaaaagttccaccagagctaaga
gacaggggtgtactaaTGAtgtagtctgaatcacagacctctatagatat
acttcctgtATAGAAACTTTATTGCTAGAGGATATAGCAGAAGCCTACTA
ATAATGATGTTAGTCATGAAAGAGCTTTTCAGAATAAGAATAGGACAAAA
AGTAGTTCGGAAAGTTCCAGTAATGTGGTCTGGATAAGAGGTTTGGTTCT
TAGTTTACCATCATCGAATGGCGCTATAGGACTATAGTATATCGAAATTA
TTAATTGGCATTCAGGACCACAACACTCTGATAACAGATTTCTGTTTGTA
TAAAAGTTTGGAGAGTTAAAAATCCAAACTGAAGCAGAGATGGAAGGAGT
ATTAAAATGTAGAGAGGTTTTGGAGTAGGAGCTAGGAGATATTGCTGCAC
GGCTTTTGTTGAAGAAGagttttttttctctcctttttcTAGCAATTTGC
GCAAGAATTTTTCCAACTCAAACTGCAATATCAACGAATGAAAACAGCAA
TATTACATTAGAATGGTCTTTGAAACCAATGCATGGAGAAATTGCAGACT
GGATATCCATTTTCCATCAATCTGATGAAAATTCTCTCATTCGACCGTTA
TGGCACGATTCTACTGGTTTGAcaaaatttggggaaaagaaatttcaaga
ttCCTTTCGAGTAAATTACGCCAAGAATTTGAAGAAAGTTTCCGCAATAA
taacaaacataaaagactCAATGATTGTTTATTTGACGGCTGTTTTCATG
GATAAAAACGGGCAAATTGTCAGTGGACCTATTTATTCCAAGTTTAAAAT
TCGAGGTAAATTGTTAACTTGGatatttagaccatgttcaaNAAGTTTAA
AATTCGAGGTAATTCAAAATTCCATATTTAATCAATTGAGCTCAGAATCC
TTAttcgtgatatgcaccattgtacggacccaacagctgattggttgtaa
gtgacgtaaaatcagtcaagagTCCCCTCAAGACGGCCCTGCAAACCAAT
CGGCTGTTTGGTACGTGATGTAATgttggaagacattgcaacggtGCATA
ACATGATTTCGAAACTCGGTGAAAGTCTCATCAAGAAGTCAAGATCTGAC
ATCAAGATCTGACATGAGAGTTCtagagtaaaaaaattaaaaccaagATT
TGGTCTATATTTGTCTATATTCTTTCCCCACTCGCTTAGATTATCATAAG
CTAATTTGTtgtgtttattttcattttcatagttGGTTACATTCAATTGA
CAGACAAACCAATTTGTTATGGAGCACGAGACAAAACACCAGCTTCCTTT
TCACTTCCTCTTGATGGTAATCTCAAAGCAATCAAGCTACGACACATCTC
TGGCAGTGTACATTGTAGTGTTAGGAGAATGAAGAACTATTGGGGCTGTA
GAGCGTGCTGCAAGGGCACTTTGATGACTATAATCACAAATTCCCTAGAC
AAAGCTATTATTCCATTAACAGGAACCCACCCAAATTATCTAGATACTAT
CAGTCCAAATTATGGTGGGGTCCTTGCTCCTGAATTAGTTCTCCCGGTAC
CCGTTGCTTCTAGGAGAGTCATCAAGGGCACATTGATGAAAATTTGGCAT
ACAGAAGATTTATTCTTATCAGGTGCAGGAGTGAATGACAATAGTGGCAC
TCACTGTGTTTTAGTTTTTGCTATGTATTCGTAAAAACATTGTTTCAatt
aagtttgtttttttgttctcAAAGGCATTTTCTTTGAGTTTAAA Coding sequence (CDS) from alignment at sc0000010:730985..733128+ >TCONS_00001378 ID=TCONS_00001378|Name=TCONS_00001378|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at sc0000010:730985..733128+ (Clytia hemisphaerica)
AACTTTCGAAAAAAGCATTTTGTTGATAGGAATATTCAGTCAAGAAAAAA
GTCGTCTCTCGTGAAAATGTGGTTTCTTTTTATGTTCATCCCTTATGCAA
TTTGCGCAAGAATTTTTCCAACTCAAACTGCAATATCAACGAATGAAAAC
AGCAATATTACATTAGAATGGTCTTTGAAACCAATGCATGGAGAAATTGC
AGACTGGATATCCATTTTCCATCAATCTGATGAAAATTCTCTCATTCGAC
CGTTATGGCACGATTCTACTGGTTTGAcaaaatttggggaaaagaaattt
caagattCCTTTCGAGTAAATTACGCCAAGAATTTGAAGAAAGTTTCCGC
AATAAtaacaaacataaaagactCAATGATTGTTTATTTGACGGCTGTTT
TCATGGATAAAAACGGGCAAATTGTCAGTGGACCTATTTATTCCAAGTTT
AAAATTCGAGttGGTTACATTCAATTGACAGACAAACCAATTTGTTATGG
AGCACGAGACAAAACACCAGCTTCCTTTTCACTTCCTCTTGATGGTAATC
TCAAAGCAATCAAGCTACGACACATCTCTGGCAGTGTACATTGTAGTGTT
AGGAGAATGAAGAACTATTGGGGCTGTAGAGCGTGCTGCAAGGGCACTTT
GATGACTATAATCACAAATTCCCTAGACAAAGCTATTATTCCATTAACAG
GAACCCACCCAAATTATCTAGATACTATCAGTCCAAATTATGGTGGGGTC
CTTGCTCCTGAATTAGTTCTCCCGGTACCCGTTGCTTCTAGGAGAGTCAT
CAAGGGCACATTGATGAAAATTTGGCATACAGAAGATTTATTCTTATCAG
GTGCAGGAGTGAATGACAATAGTGGCACTCACTGTGTTTTAGTTTTTGCT
ATGTATTCGTAAAACTTTCGAAAAAAGCATTTTGTTGATAGGAATATTCA
GTCAAGAAAAAAGTCGTCTCTCGTGAAAATGTGGTTTCTTTTTATGTTCA
TCCCTTATGCAATTTGCGCAAGAATTTTTCCAACTCAAACTGCAATATCA
ACGAATGAAAACAGCAATATTACATTAGAATGGTCTTTGAAACCAATGCA
TGGAGAAATTGCAGACTGGATATCCATTTTCCATCAATCTGATGAAAATT
CTCTCATTCGACCGTTATGGCACGATTCTACTGGTTTGAcaaaatttggg
gaaaagaaatttcaagattCCTTTCGAGTAAATTACGCCAAGAATTTGAA
GAAAGTTTCCGCAATAAtaacaaacataaaagactCAATGATTGTTTATT
TGACGGCTGTTTTCATGGATAAAAACGGGCAAATTGTCAGTGGACCTATT
TATTCCAAGTTTAAAATTCGAGttGGTTACATTCAATTGACAGACAAACC
AATTTGTTATGGAGCACGAGACAAAACACCAGCTTCCTTTTCACTTCCTC
TTGATGGTAATCTCAAAGCAATCAAGCTACGACACATCTCTGGCAGTGTA
CATTGTAGTGTTAGGAGAATGAAGAACTATTGGGGCTGTAGAGCGTGCTG
CAAGGGCACTTTGATGACTATAATCACAAATTCCCTAGACAAAGCTATTA
TTCCATTAACAGGAACCCACCCAAATTATCTAGATACTATCAGTCCAAAT
TATGGTGGGGTCCTTGCTCCTGAATTAGTTCTCCCGGTACCCGTTGCTTC
TAGGAGAGTCATCAAGGGCACATTGATGAAAATTTGGCATACAGAAGATT
TATTCTTATCAGGTGCAGGAGTGAATGACAATAGTGGCACTCACTGTGTT
TTAGTTTTTGCTATGTATTCGTAAAACTTTCGAAAAAAGCATTTTGTTGA
TAGGAATATTCAGTCAAGAAAAAAGTCGTCTCTCGTGAAAATGTGGTTTC
TTTTTATGTTCATCCCTTATGCAATTTGCGCAAGAATTTTTCCAACTCAA
ACTGCAATATCAACGAATGAAAACAGCAATATTACATTAGAATGGTCTTT
GAAACCAATGCATGGAGAAATTGCAGACTGGATATCCATTTTCCATCAAT
CTGATGAAAATTCTCTCATTCGACCGTTATGGCACGATTCTACTGGTTTG
AcaaaatttggggaaaagaaatttcaagattCCTTTCGAGTAAATTACGC
CAAGAATTTGAAGAAAGTTTCCGCAATAAtaacaaacataaaagactCAA
TGATTGTTTATTTGACGGCTGTTTTCATGGATAAAAACGGGCAAATTGTC
AGTGGACCTATTTATTCCAAGTTTAAAATTCGAGttGGTTACATTCAATT
GACAGACAAACCAATTTGTTATGGAGCACGAGACAAAACACCAGCTTCCT
TTTCACTTCCTCTTGATGGTAATCTCAAAGCAATCAAGCTACGACACATC
TCTGGCAGTGTACATTGTAGTGTTAGGAGAATGAAGAACTATTGGGGCTG
TAGAGCGTGCTGCAAGGGCACTTTGATGACTATAATCACAAATTCCCTAG
ACAAAGCTATTATTCCATTAACAGGAACCCACCCAAATTATCTAGATACT
ATCAGTCCAAATTATGGTGGGGTCCTTGCTCCTGAATTAGTTCTCCCGGT
ACCCGTTGCTTCTAGGAGAGTCATCAAGGGCACATTGATGAAAATTTGGC
ATACAGAAGATTTATTCTTATCAGGTGCAGGAGTGAATGACAATAGTGGC
ACTCACTGTGTTTTAGTTTTTGCTATGTATTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001378-exon-sc0000010-1491911889:730985..731082 | TCONS_00001378-exon-sc0000010-1491911889:730985..731082 | Clytia hemisphaerica | exon |
| TCONS_00001378-exon-sc0000010-1510915933:730985..731082 | TCONS_00001378-exon-sc0000010-1510915933:730985..731082 | Clytia hemisphaerica | exon |
| TCONS_00001378-exon-sc0000010-1575043694:730985..731082 | TCONS_00001378-exon-sc0000010-1575043694:730985..731082 | Clytia hemisphaerica | exon |
| TCONS_00001378-exon-sc0000010-1491911889:731827..732189 | TCONS_00001378-exon-sc0000010-1491911889:731827..732189 | Clytia hemisphaerica | exon |
| TCONS_00001378-exon-sc0000010-1510915933:731827..732189 | TCONS_00001378-exon-sc0000010-1510915933:731827..732189 | Clytia hemisphaerica | exon |
| TCONS_00001378-exon-sc0000010-1575043694:731827..732189 | TCONS_00001378-exon-sc0000010-1575043694:731827..732189 | Clytia hemisphaerica | exon |
| TCONS_00001378-exon-sc0000010-1491911889:732617..733128 | TCONS_00001378-exon-sc0000010-1491911889:732617..733128 | Clytia hemisphaerica | exon |
| TCONS_00001378-exon-sc0000010-1510915933:732617..733128 | TCONS_00001378-exon-sc0000010-1510915933:732617..733128 | Clytia hemisphaerica | exon |
| TCONS_00001378-exon-sc0000010-1575043694:732617..733128 | TCONS_00001378-exon-sc0000010-1575043694:732617..733128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:730985..733128 + |
Blast
The following BLAST results are available for this feature:
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