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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015121 ID=TCONS_00015121|Name=TCONS_00015121|organism=Clytia hemisphaerica|type=transcript|length=842bp
TTATGATTATGGCATGGTTCACATGGTGGTGTTTAGTACAGAACACGATT
ACCGCCCAGGATCACAACAATATAAATGGTTGGAGAATGATTTGAAGAAT
GTTGATCGCAAGAAAACTCCTTTTGTGATCGTAAGCGGGCATCGACCAAT
GTATTGTAGTGAATATGGTCCAGTTGATTACAAAACTACTATCCACATGC
AACAGTATGTAGAAGATCTCTTATACGAACACAAAGTAGATTTAGGTCTG
TGGGCGCACTACCATTCATACGAGAGAACATGCAAAGTCTACCGCAATGA
ATGCCGGGAAGATGGTATCTTACATTTGATGATTGGATCTGCAGGAAAAC
AATTGGACAGTGAGAAATGGTATAAGAAAGAATGGTCTGCATACCATGAT
CGTAACTATGGTTACGGAAGATTCTCTGTCAAAAATTCAACTCATATTTT
TTTCGAGTTTGTTCAAGATAGTATCGATAAAGTCGTCGATTCTGTGTGGA
TCACCAAATGAATTAATCGAATATCGTCTTAGGTGATAAATCGCGATTTT
CCTGACTGATTACTATTTGCCAAGCCACATTCATGAGATAAAAGTTCGGA
TATTTTGATGAATAGTACCAACATCTTGGAGTGGCCAAGCCATGAAATTT
ActtaaaatgttaaatttttctCAAGATGGACGTTATTTTTTCACCATCA
AAGccttttcaccatttttttacttatactttttttaattttgtacattt
tatGCATCATATTTTCGAAGTAAATATTTAAAACTCTTTTGCCACTGTCC
TCGATTTCTTCAGCTTCTGTAAGAGGATTGGCTAAATCATGA Run BLAST on NCBI transcript from alignment at sc0000204:23388..29408- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015121 ID=TCONS_00015121|Name=TCONS_00015121|organism=Clytia hemisphaerica|type=transcript|length=6021bp|location=Sequence derived from alignment at sc0000204:23388..29408- (Clytia hemisphaerica)
TTATGATTATGGCATGGTTCACATGGTGATGTTAAGTACAGAACACGATT
ACCGCCCAGGATCACCTCAATATATTTGGTTGGAGAATGATCTGAAGAGT
GTAGATCGAACGAAAACACCTTTCATTATGGTTGGAGGGCATAGACCGAT
GTATTGTAGCGAAGCTTACCCAGGTATAACAAACCAGAGTTTGCAAGTTA
TTAAAAATTCACTCCTTATAATATTGTTTGGTTAGTGTGAATCACTAGTC
CATGTTCACTAGGTAGCCTCGGTTAGGGTTTTTGTGGTATAGTTTTAATG
GTGTTTAAGCATGTTATTACCCATTTTGATTCTCTGTTTCAAAGTGTAAC
TCATTTTCCCTGGAATCTCTAACTTATTTGTAAGCATCAATATTGGTTTT
CTTCTTATTCCAGTGAATTATGGTATTGCCTTGCACATGCAACAATATTT
CGAAGACATGTTTTATAAATACAAAGTGACCGTTGGTTTATGGGCTCACT
ATCATGCTTATGAGCGAACGTGCAAGGTCTACCGCAACGAATGCAGGGAT
GATGGTATCCTACATCTGCTCATCGGGTCTGGTGGCAGAAGCTTGGATCG
AGACGAATGGTACAAAAAAGAATGGTCAGTTTTCCACAAGACAGATTACG
GTTATGGAAGATTCTCAGTCAAGAATTCAACGCACATCTTTTTCGAATTT
GTTGAGAATAGCAGTCAAACGGTGCTCGATTCTGTTTGGATCACCGCTGA
TTGATTAATTGAATGCAGGGATAAGATACAGGTTTGATGCTAGTTGTTAA
TAGATTAGAGTTTAAAAAGTAGTAATGTTTTGTGAATTGTGAATCGTACA
AAATATGAATCGGTGTGGAGAGTATAACCTTTCCTTTCCTTTAATCGCGA
CATTTTTTAAAATAGTATGAGTCACGTAGATTCATGTGATTTAGCTTGTA
TAATTAGAATGTTGATCTTGACTACATATCACGTCTGAAAAGCTTCAAAG
TTGTGATGTCAAAAAAGATAATTAATTATAATTTATACACGTTGGTATGA
TCTATTCATGCCTTTGATCGTTTTTAATAATACCAATTAATTTCATTGTA
GATATTTTATGTAAATCTTTTTTTTATATGTTTTTTTTTTAAATTACATA
ATTTTTTGTTTAGCATTTTGTGGTTCGTAGAAAATATATAAGATGTTTAA
AAAACAAGACAAGTCACGGGTTACTAGTTGGTATCATAAAAAGTTTTTAG
ACAGGAATTGACTTGTCTCATGATAGAGGACCTCACATAGAACTTTGTTG
CTCTCACGAAAACGATTGTTGATTTTGATACCCTTGTCAACAGAGCTCTC
TTATAACTGGTCCTTTCCTGTTGTGATGTTTTTCTTAAGAAACTGCTAGA
TTGTATTTGCATTTGACATGCTTTTGTTGTGGTTGTACCCTTGTTTATTC
TTTATACTTATAGTTATCTTTCTCTCTCTAGAAATACTAAAAAATGAATT
AACAAAAATTAAACTAACAAATTAACACAACAAATTAAAATGAAGGCTGT
TGCATATTTGGCGGGGTTCATTTTGAATTTTGTTGGATTGAATGGCAAAG
GTTACCATCCTGTACCAACTTTTTTCAAGTAGGTGGAATTATTTTCTCTT
GACAAAGCGAAACCTCTGCTCAGTCATCATGTATATCGCATAACTTCAAA
TGAGAACCAACTTTTCGACACCTTCGTTCAGGAGTTTGTTCAATGATGGT
CACTACGATTAATTTAGGGTTCCCTATATGGTTCTTATGCTTTCTGCTTT
TCGTTTTGCACTGTGTACACTTATTTGCAAGTCGTTTTTAACCCAAAATA
TTTTGAACACTTTTTTTTATATATATAAGAACATAAGGCTTCGATGGCCG
AAATATTAAGAACAATTTAAGAACATTAGATTACAAGAACATTAGGAACA
TTTTTAGACTTAAAACTCAAAAAGTTAAGAACATCCCAAGGCTTCAAAAA
TTTTGGATGTTCTTATGAAAAACACGTGTAGTAACGGGATTTTTACGTCA
GAAATTCTGTATTATTCATCTTTCAGTCGAAAATACCCAAATGGGTCGAT
GGTGGATGCAAATCGCCCTGATTTTAAAATGGAAGGACCTTTTGAAAATA
ATATGGATCTCAATAATATGAAAGCTTTGCTAAAAGTTTGGCCAGAAGAA
GTCGAAAATGCAGGACAAGTGACAGTTCTATGGGAGGGAATTCCCAATCC
AACCAAAACANCTGTGTGTCTGTGTGTGTGTCTGTCTCTCTGTCTGTCAC
AAAAACTTTAGGGCAGCCTGGAGACTTTAAAAATGCTTGGATTTGGCTGA
AATTCGGCACACTTGTTCCTTGGGTGAATATCTGGGTTTTTTTTTTCATT
TTTCAAAAATTTTGTTTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAAC
GAGGCTAAAGCTTTGGGGCAGCCTGGAGACGTTAAAAAATGTTGGATTTG
GCTGAAATTTGGCTCACTTGTTCATTGGGTGAATATCTGGGGTAATTTTT
TCATTTTTCAAAAATTTAGATTTTTGGGGCCTGGGGACGAGTTTTTCGCC
AAAACGAGGCTAAAACTTTGGGGCAGTCTGGAGACGTCAAAAATTGTTGG
ATTTGGCTGAAATTCGGCACACTTGTTCCTTGGGTGAATATCTGGGGGTC
TACAATTGGGCCTATAATTTGAAGCCACTGAAGTTGAGCCCAGTGCGTTG
CGCACGTTCGACTATTTTAAATTAGAACCAACATGGAGGTATAAAGAAAA
ACAGGAGATTTATGTTATTATAACCACCCTCTTCATACGATTAAAGTTAA
GAGATTTGCATGCTCATTATGGTATATTGTGTATTTTTAATGAGCTCTTT
GTTCATTGGTGAAATCTTATTGGCTCATTTAAGTGTTAGAAAAAAGATGA
GACGAGATCCATTCTTTCTTATATCTGCTTATATCGGTGTAAGAAAATAT
TTGAACACCGTTTTTATAAACGATAAAAACGTGTCAAACTCTTCATTAAA
AAAAAAACGTCTGTAGATTAATCAAATTCAATTGTTTCATTTATCAGTCG
CTGAAGGCATCCAAGTGCGTTATGGTAAAACAAAAGACCTTGACAAAACA
CAAACGAAATATACCGTCAAAACTTACAAAGCTTCAGACATGTGTGAACC
TCCTGCTAACACAACTGGATTTTGGGATGCTGGGTATATTTATGATGTTT
TGTTGACTGACTTGGAACCCAACACGAAATATTATTACTCCTGTGGTAGT
AGAGAGGTAAACAATTAAATACAATTTGGCTAAAAAAACCACACATTTCT
GATATCGAAATAGGTTGCACTCTCCACTCTTTTTTTTATAAGAGAAATCC
GTTTAGAAGAGATGGTAAATTTTAGTTCAAATGAAAAGGAGAGCTGTTTA
ATGCAGGCTTTACACTGGACGAAACCCATATCACTTCATATGTATCATTT
TTCTGAATCTTCTATAATATTCTCTTTCAGATTATGTCATCTGTTTACAA
CTTCACCACCCCTTTGAAAGGAGGAGACAGAACGCCCTTCAATTTCATTT
CTTACGGGGACATGGGGACCAGTTCTTTCGCCGAACAAACAGCCAAATTG
GTTCACCAAGAGATCAATGAGAATGATATCAAATTTGTTTACCATGCAGG
GGACATCTCTTACGCTCGTGGATATGTAAGAAATCATTTTAAATCACATT
TGAAAATCTTTGAAAGAAAATCATTAATTTGAGTGAAAACCTGGCATCGT
TTGCAACTACAAAGTTAGTTTTTTTCTCTATGTACTATGTACTAAAGAAT
GTCACTTTTACTCTACAGTGTGTCCCAAAAAAGCGGACAAATTTTTGATT
GAAGTAGAATCCTCAAAACTCATTATCTCAAGTGAGTTTAGAATAATTGA
AGTAAGATTAAAATTCTTTGTTCAATCGATGGATATATAATTCTCAAGAT
AATTGAGTATGTTTTTGAGATTGAAATATTAAGTATATAAGTCACAAAAT
TTCACATGGATACGAGGATTTTACTTTATATGAAATTTTGTCTGTTTTTT
TTGGAACATTGTATTTTAACATTCTTAAAATTGTCTTGATTATTCAGGCG
TATATTTGGGATCAATGGTTCGATATGATTCAGCCAATGGCATCAGTTGT
TCCTTACATGGTCTCTCTTGGAAATCATGAATATCAACATCTGATTGGAT
GGGAGAAAGAACCTTTCCACTTTCCACCCTTCAAACCATCATGGTTCAAT
GCTGGTAGAGGATCTTTTGGTGAATGTGCGAAACCCACGCTCAATCGTTT
TCACATGCCTGAAAATGGACTGAGCTTGTTATGGTATGTCTATAAACCCT
TCAAACCTGAAAGACGCCTATGCTCTTTTTTTTTAAGAGTATAAAGATAG
TTGTAAAAGTTGGAAATTTTCATAATCTTCAAACAGCAGCAAATTTTCAT
TTTTATATTCTGAGGCCAAATGTCTGACTCTTTACTTCTGAAGTAGTAAT
TGACTTATGAACTGGTATGACTTAAACATAATTTTCCATAAGCTTCCGTA
TTTAAACCTACGTCTCAATGGGAAATCAACCAAATTAATTATTTTTGCAG
GTACAGTTACGATTATGGCATGGTTCACATGGTGGTGTTTAGTACAGAAC
ACGATTACCGCCCAGGATCACAACAATATAAATGGTTGGAGAATGATTTG
AAGAATGTTGATCGCAAGAAAACTCCTTTTGTGATCGTAAGCGGGCATCG
ACCAATGTATTGTAGTGAATATGGTCCAGGTATGTAACTAAGCTGCACTG
TTCGCCTACTCGCTGTTTCGGGAATTTCTCAAAATGAAGCATTTCCCCAA
ATAGGTTGTAGATTAGTTGGATTGAAATTTAGATTGAGTAGGTGCATGAT
TCTTGGTAAATTAAGTATTATTCCTGTCTCTTTGCGTTAAAGAAAAACGC
TGTCAGCAGTTGCTTTATAATCTAGGATTCCATCTACATATTTAAGTATA
GTTGAATTGCAACCCTTTCTCAAGGTATTAGCGAGTTTATGTGTGTGTTT
TTGTACGGTGGAGACGGTTAGCTTCCGATTTGACTAGATCCTGATCAACT
GTGGACGACGGTAAGCAAGCACTTATACCGTCCTCCATTTTGCGGGTTAG
AAGTGCGGGTTATTCCGAATTGCTTCAGTCACTCCGCCGTCCTCTAAAGT
GAAAATACTTAAGTCGCTAGTAACCACAATTTTAGCGGATTCTTTATATC
GTAAAGAATTCTGATTACTTTTAAAACTATAATATGAACCATTCCGTTCT
AGTTGATTACAAAACTACTATCCACATGCAACAGTATGTAGAAGATCTCT
TATACGAACACAAAGTAGATTTAGGTCTGTGGGCGCACTACCATTCATAC
GAGAGAACATGCAAAGTCTACCGCAATGAATGCCGGGAAGATGGTATCTT
ACATTTGATGATTGGATCTGCAGGAAAACAATTGGACAGTGAGAAATGGT
ATAAGAAAGAATGGTCTGCATACCATGATCGTAACTATGGTTACGGAAGA
TTCTCTGTCAAAAATTCAACTCATATTTTTTTCGAGTTTGTTCAAGATAG
TATCGATAAAGTCGTCGATTCTGTGTGGATCACCAAATGAATTAATCGAA
TATCGTCTTAGGTGATAAATCGCGATTTTCCTGACTGATTACTATTTGCC
AAGCCACATTCATGAGATAAAAGTTCGGATATTTTGATGAATAGTACCAA
CATCTTGGAGTGGCCAAGCCATGAAATTTACTTAAAATGTTAAATTTTTC
TCAAGATGGACGTTATTTTTTCACCATCAAAGCCTTTTCACCATTTTTTT
ACTTATACTTTTTTTAATTTTGTACATTTTATGCATCATATTTTCGAAGT
AAATATTTAAAACTCTTTTGCCACTGTCCTCGATTTCTTCAGCTTCTGTA
AGAGGATTGGCTAAATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015121-exon-sc0000204-1575043694:29387..29408 | TCONS_00015121-exon-sc0000204-1575043694:29387..29408 | Clytia hemisphaerica | exon |
| TCONS_00015121-exon-sc0000204-1575043694:24580..24730 | TCONS_00015121-exon-sc0000204-1575043694:24580..24730 | Clytia hemisphaerica | exon |
| TCONS_00015121-exon-sc0000204-1575043694:23388..24056 | TCONS_00015121-exon-sc0000204-1575043694:23388..24056 | Clytia hemisphaerica | exon |
| TCONS_00015121-exon-sc0000204-1510915933:29387..29408 | TCONS_00015121-exon-sc0000204-1510915933:29387..29408 | Clytia hemisphaerica | exon |
| TCONS_00015121-exon-sc0000204-1510915933:24580..24730 | TCONS_00015121-exon-sc0000204-1510915933:24580..24730 | Clytia hemisphaerica | exon |
| TCONS_00015121-exon-sc0000204-1510915933:23388..24056 | TCONS_00015121-exon-sc0000204-1510915933:23388..24056 | Clytia hemisphaerica | exon |
| TCONS_00015121-exon-sc0000204-1491911889:29387..29408 | TCONS_00015121-exon-sc0000204-1491911889:29387..29408 | Clytia hemisphaerica | exon |
| TCONS_00015121-exon-sc0000204-1491911889:24580..24730 | TCONS_00015121-exon-sc0000204-1491911889:24580..24730 | Clytia hemisphaerica | exon |
| TCONS_00015121-exon-sc0000204-1491911889:23388..24056 | TCONS_00015121-exon-sc0000204-1491911889:23388..24056 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000204 | supercontig | sc0000204:23388..29408 - |
Blast
BLAST of TCONS_00015121 vs. Swiss-Prot (Human)
Match: ACP7 (Acid phosphatase type 7 OS=Homo sapiens GN=ACP7 PE=2 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 8.322e-28 Identity = 73/198 (36.87%), Postives = 105/198 (53.03%), Query Frame = 2
Query: 2 YDYGMVHMVVFSTE------HDYRPGSQQYKWLENDLK--NVDRKKTPFVIVSGHRPMYCSEYGPVD-------YKTTIHMQQY-VEDLLYEHKVDLGLWAHYHSYERTCKVYR----NECRE------DGILHLMIGSAG--KQLDSEKWYKKEWSAYHDRNYGYGRFSVKNSTHIFFEFVQDSID-KVVDSVWITK 508
+D G H++ FSTE + +Q++WLE+DL+ N +R P++I GHRPMYCS D + + + Y +EDL Y++ VDL LWAH HSYER +Y N RE G +H++ GSAG ++L + + WSA + YGY R + N THI + V D D K+VD VW+ +
Sbjct: 232 WDLGPAHIISFSTEVYFFLHYGRHLVQRQFRWLESDLQKANKNRAARPWIITMGHRPMYCSNADLDDCTRHESKVRKGLQGKLYGLEDLFYKYGVDLQLWAHEHSYERLWPIYNYQVFNGSREMPYTNPRGPVHIITGSAGCEERLTPFAVFPRPWSAVRVKEYGYTRLHILNGTHIHIQQVSDDQDGKIVDDVWVVR 429
The following BLAST results are available for this feature:
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