|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015110 ID=TCONS_00015110|Name=TCONS_00015110|organism=Clytia hemisphaerica|type=transcript|length=1016bp
TTGAGGCAtttgaaaaaagtaatttgGTAAAATAATCTAATAATCTTTCT
AAAAAAGTAAAACCTGGACTTAAAAGATTTTCGTTTTCAATATACGTTGA
AACAATGTACTTTGCCAACCTCTTGCCCGTGTATCCCATGCTTTATTACT
TTTACTTATGAACGCCAGAGATTATTATCTGGATTTaacagtaagcataa
aaaaaagccaataatacgcagggaacgaggttggtacTGCTTGGCAACCA
TGTGAACACTAAAACATACCCAGAGTACTGTTCTCGCTCATCTCTTTCGC
CTCATCTTCTCTTTTCTTATATACAGCCAACaaatgtttcttttgtttcg
gTAACTCGCTATCCCACACCAAACAATACCCAtccaaattttctttatta
TCTTTTTGAACAGTATAAGGACTTGACCAGGGCCAGAATCCCTGACCAGA
GGTGACCACGGATTGAGAGCCACCACCGAGTCGTGGACACACTGTGATTG
ATCGAACCGTGGATTTACTTCTTGAAATAATGTTCAAAGGTTctacattt
tttgttttgtttgtatcAAGAATGATAACGTGTCCGCTTTCCGTGCCAAT
CCAGATATTAGAGCTCTCCACGATTGCCATGCTTATAGGGCGGCAGTCAC
GAGGCGTTAGGGTTGCGTATTCTTTCTGTAAAATCTCATGGCAGTCAATT
ACATCTGTGATGCAGGTAGAAATAAACAATTTGGATGTTTCGTACACTTT
GATTTGGTGGTCTTCACGACACGTCACAAAAACACGTTTCTTTGTGACGG
TTAACGCGGACACTATGTTGGGGGCTTTTGATCCGACATTTATTTGACGT
ACAACACGGCCAGAATCCATACGTAATTCTAAAAGCGATTGCCCGTAACC
ACATAATAAGGTATTTCCGAGTGTAGCTAGACATGCGATTGGTCCTTTTG
GGATTTCGGCATCAATCTTGATGGGAGCGTTGGAGGCGTTGTAAGGGTTT
TCACGATCGTAATCTA Run BLAST on NCBI transcript from alignment at sc0000204:279856..280955+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015110 ID=TCONS_00015110|Name=TCONS_00015110|organism=Clytia hemisphaerica|type=transcript|length=1100bp|location=Sequence derived from alignment at sc0000204:279856..280955+ (Clytia hemisphaerica)
TTGAGGCAtttgaaaaaagtaatttgGTAAAATAATCTAATAATCTTTCT
AAAAAAGTAAAACCTGGACTTAAAAGATTTTCGTTTTCAATATACGTTGA
AACAATGTACTTTGCCAACCTCTTGCCCGTGTATCCCATGCTTTATTACT
TTTACTTATGAACGCCAGAGATTATTATCTGGATTTaacagtaagcataa
aaaaaagccaataatacgcagggaacgaggttggtacTGCTTGGCAACCA
TGTGAACACTAAAACATACCCAGGGTACTGTTCTCGCAACCATGTGAACA
CTAAAACATACCCAGGGTACTGTTCTCGCAACCATGTGAACACTAAAACA
TACCCAGAGTACTGTTCTCGCTCATCTCTTTCGCCTCATCTTCTCTTTTC
TTATATACAGCCAACaaatgtttcttttgtttcggTAACTCGCTATCCCA
CACCAAACAATACCCAtccaaattttctttattaTCTTTTTGAACAGTAT
AAGGACTTGACCAGGGCCAGAATCCCTGACCAGAGGTGACCACGGATTGA
GAGCCACCACCGAGTCGTGGACACACTGTGATTGATCGAACCGTGGATTT
ACTTCTTGAAATAATGTTCAAAGGTTctacattttttgttttgtttgtat
cAAGAATGATAACGTGTCCGCTTTCCGTGCCAATCCAGATATTAGAGCTC
TCCACGATTGCCATGCTTATAGGGCGGCAGTCACGAGGCGTTAGGGTTGC
GTATTCTTTCTGTAAAATCTCATGGCAGTCAATTACATCTGTGATGCAGG
TAGAAATAAACAATTTGGATGTTTCGTACACTTTGATTTGGTGGTCTTCA
CGACACGTCACAAAAACACGTTTCTTTGTGACGGTTAACGCGGACACTAT
GTTGGGGGCTTTTGATCCGACATTTATTTGACGTACAACACGGCCAGAAT
CCATACGTAATTCTAAAAGCGATTGCCCGTAACCACATAATAAGGTATTT
CCGAGTGTAGCTAGACATGCGATTGGTCCTTTTGGGATTTCGGCATCAAT
CTTGATGGGAGCGTTGGAGGCGTTGTAAGGGTTTTCACGATCGTAATCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015110-exon-sc0000204-1491911889:279856..280120 | TCONS_00015110-exon-sc0000204-1491911889:279856..280120 | Clytia hemisphaerica | exon |
| TCONS_00015110-exon-sc0000204-1510915933:279856..280120 | TCONS_00015110-exon-sc0000204-1510915933:279856..280120 | Clytia hemisphaerica | exon |
| TCONS_00015110-exon-sc0000204-1575043694:279856..280120 | TCONS_00015110-exon-sc0000204-1575043694:279856..280120 | Clytia hemisphaerica | exon |
| TCONS_00015110-exon-sc0000204-1491911889:280205..280955 | TCONS_00015110-exon-sc0000204-1491911889:280205..280955 | Clytia hemisphaerica | exon |
| TCONS_00015110-exon-sc0000204-1510915933:280205..280955 | TCONS_00015110-exon-sc0000204-1510915933:280205..280955 | Clytia hemisphaerica | exon |
| TCONS_00015110-exon-sc0000204-1575043694:280205..280955 | TCONS_00015110-exon-sc0000204-1575043694:280205..280955 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000204 | supercontig | sc0000204:279856..280955 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
| IPR017986 | WD40_repeat_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
