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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001534 ID=TCONS_00001534|Name=TCONS_00001534|organism=Clytia hemisphaerica|type=transcript|length=2090bp
ttttattattgtTGGCATATACTAATGAAAAAGCCCTAACGACAGCACGT
CGCTTCTGAGTACTTAGAGTATAGTAAGAGAGAGAAGTTTTTCTACTGAA
ATGTTGAAACGTGTTTGAAGTACTATCATTTTTGGCACACCATTTTAACA
GAAGATTACTTGTTTCAAATACTAAACAACAAACGTTGTAAACTtataaa
attggaaaatcatTTCAACGGTTTGAATTGTTTGAAAATGGCTTTATCTA
TTGTTGGAAGAACTGACAATGACAATGATTTGGATGAAGTTGAAGTTGAT
TCTGATTGTGATAGTGATGATCAGCTGGTTATTGATGAAATTGATGAAAC
TGacgaaagaaaaaactttgatCAAGGTCTCCAATTCCCAACAAAGGATG
GTCAAGTTGATTCTAATCTACTATCCAGAGCTGAACTACCTCCTTGTAGG
GATGAAATGGTTCACATTCATCAAATGGTTATTTGTGAAGAAGAAAATCC
AAATAATCTATCAAGCAATCGAATGGCTAGTACTAAGGTTAATAACCAAG
GCAATATAATTTATCGTTATGTTGCTGGTGATGGAAATATTTGCAGAATG
AGTTCAGGTAAGTGTAGCGTGGAAACCCAAACAGAATGTATTACATCTAA
CCAATGTAAAACAATTGCCGCGGATTTCCACCGTGGTGAAAATGGCCCAA
AAGGTGTTGTGGCCTCGCCCGAGCACGTTGGTACTTTTACTCAATTCAGA
AGAGCTTCAAGATCACATTCTAATTCATCAGATGATTCAGGAAACACCAG
ACGAAAATATAAAGATATACTAAAACATGGTAATTCGATGGttgacttga
aaaagaaaaaacgtttAGAGAGAAATAATCACGCGTCCAAGAGATACCAA
GCCAAGCAAAAAGAAGAGGCTGAAAACTTTCTTAAAGTTGAGCGAGAAAT
AGAAGAAAGCGTCAACATTCTAAAACGACAATTGCGAGAGGGCGAGAACG
AGCGAGACCACTTGATCAATTGCATCTATCGAATAATCAGCGAAGAGTTC
TTTAACATAAATAAAGAACAATTTTGTGAGAGCTTTAGTAAACTAGCCAT
ATTTAGAGATCGGGCTATGAGGGAAAGAGATAACGATTCGATCAAGGTTT
TAGATAAGTTATTACAACATGGCGTGGAAATCACCCACCGGTTGAATGAT
GAGCAGCAGAAATTGATCAAATATTATGTGTCTAGTAGTATGTCATACTA
CAAACAAAAATGTGGACAGTAATACACTGTATGGAAATTAAAATCTCTTT
GTAAGAATTTTCATGATGTTCATGACCCAAGTAAGTTTAATATTTTATAA
CAATTTTATAATGTAAATTCGAGGTTCTCTTAAACTCGTAGCTAAACGAA
TTATATTTCAGGGGAAAATTTAACAGAAAGTTTGAAcaattaaaaatact
ttttgacAAGTTAAACATTTTATGtataaattttatgaaacttACCAGTA
TCAATTAGAAACAATTATAAACCGTTGAAAAAATGAGGTTTTGGAGATTA
AGATGAAATACAGAAAAGAGGAACGACTTATTTCTCCTTTCATGGTGCTA
GAAGCCTCTGCAACTCTTATATCGAAAGTTGCAGGTTGCTCGTTTCAGTC
GAAAAACCCTGCTTTTGCATGTTTTGTTTCCCACTTTGTAGAACCTGTAC
ATACAATAATTTTATGTGATAAATATAACCGATATAACTGAAATAAGGAT
ACTTAAAAGTACCTCAGTATTAAGAATGAGGTCTCTAGCActaaaagaca
aaaattttccattttctttttcactttttatcttcattttctgACGTTTC
TTGGAACTACAATATTCTCAAAAGTTACAGTACTCTGAAtgatcttttca
acggtatataatttgttataaaatcaaaacattcaaatcagTGCATACGT
ATTGTAAATGGACTTAAGTTCAACAACGATCTTTCTTTAATTAGGAAGTT
ATCTTTTTTGTCATGTTCACCTTGTAGCACTTATACACAAGCATTGTAAA
CAAAATATTATAACAAATAAACAATGTAAATTCTTGATTC Run BLAST on NCBI protein sequence of TCONS_00001534-protein >TCONS_00001534-protein ID=TCONS_00001534-protein|Name=TCONS_00001534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MALSIVGRTDNDNDLDEVEVDSDCDSDDQLVIDEIDETDERKNFDQGLQF
PTKDGQVDSNLLSRAELPPCRDEMVHIHQMVICEEENPNNLSSNRMASTK
VNNQGNIIYRYVAGDGNICRMSSGKCSVETQTECITSNQCKTIAADFHRG
ENGPKGVVASPEHVGTFTQFRRASRSHSNSSDDSGNTRRKYKDILKHGNS
MVDLKKKKRLERNNHASKRYQAKQKEEAENFLKVEREIEESVNILKRQLR
EGENERDHLINCIYRIISEEFFNINKEQFCESFSKLAIFRDRAMRERDND
SIKVLDKLLQHGVEITHRLNDEQQKLIKYYVSSSMSYYKQKCGQ Run BLAST on NCBI transcript from alignment at sc0000010:612865..614954 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001534 ID=TCONS_00001534|Name=TCONS_00001534|organism=Clytia hemisphaerica|type=transcript|length=2090bp|location=Sequence derived from alignment at sc0000010:612865..614954 (Clytia hemisphaerica)
GAATCAAGAATTTACATTGTTTATTTGTTATAATATTTTGTTTACAATGC
TTGTGTATAAGTGCTACAAGGTGAACATGACAAAAAAGATAACTTCCTAA
TTAAAGAAAGATCGTTGTTGAACTTAAGTCCATTTACAATACGTATGCAc
tgatttgaatgttttgattttataacaaattatataccgttgaaaagatc
aTTCAGAGTACTGTAACTTTTGAGAATATTGTAGTTCCAAGAAACGTcag
aaaatgaagataaaaagtgaaaaagaaaatggaaaatttttgtcttttag
TGCTAGAGACCTCATTCTTAATACTGAGGTACTTTTAAGTATCCTTATTT
CAGTTATATCGGTTATATTTATCACATAAAATTATTGTATGTACAGGTTC
TACAAAGTGGGAAACAAAACATGCAAAAGCAGGGTTTTTCGACTGAAACG
AGCAACCTGCAACTTTCGATATAAGAGTTGCAGAGGCTTCTAGCACCATG
AAAGGAGAAATAAGTCGTTCCTCTTTTCTGTATTTCATCTTAATCTCCAA
AACCTCATTTTTTCAACGGTTTATAATTGTTTCTAATTGATACTGGTaag
tttcataaaatttataCATAAAATGTTTAACTTgtcaaaaagtattttta
attgTTCAAACTTTCTGTTAAATTTTCCCCTGAAATATAATTCGTTTAGC
TACGAGTTTAAGAGAACCTCGAATTTACATTATAAAATTGTTATAAAATA
TTAAACTTACTTGGGTCATGAACATCATGAAAATTCTTACAAAGAGATTT
TAATTTCCATACAGTGTATTACTGTCCACATTTTTGTTTGTAGTATGACA
TACTACTAGACACATAATATTTGATCAATTTCTGCTGCTCATCATTCAAC
CGGTGGGTGATTTCCACGCCATGTTGTAATAACTTATCTAAAACCTTGAT
CGAATCGTTATCTCTTTCCCTCATAGCCCGATCTCTAAATATGGCTAGTT
TACTAAAGCTCTCACAAAATTGTTCTTTATTTATGTTAAAGAACTCTTCG
CTGATTATTCGATAGATGCAATTGATCAAGTGGTCTCGCTCGTTCTCGCC
CTCTCGCAATTGTCGTTTTAGAATGTTGACGCTTTCTTCTATTTCTCGCT
CAACTTTAAGAAAGTTTTCAGCCTCTTCTTTTTGCTTGGCTTGGTATCTC
TTGGACGCGTGATTATTTCTCTCTaaacgttttttctttttcaagtcaaC
CATCGAATTACCATGTTTTAGTATATCTTTATATTTTCGTCTGGTGTTTC
CTGAATCATCTGATGAATTAGAATGTGATCTTGAAGCTCTTCTGAATTGA
GTAAAAGTACCAACGTGCTCGGGCGAGGCCACAACACCTTTTGGGCCATT
TTCACCACGGTGGAAATCCGCGGCAATTGTTTTACATTGGTTAGATGTAA
TACATTCTGTTTGGGTTTCCACGCTACACTTACCTGAACTCATTCTGCAA
ATATTTCCATCACCAGCAACATAACGATAAATTATATTGCCTTGGTTATT
AACCTTAGTACTAGCCATTCGATTGCTTGATAGATTATTTGGATTTTCTT
CTTCACAAATAACCATTTGATGAATGTGAACCATTTCATCCCTACAAGGA
GGTAGTTCAGCTCTGGATAGTAGATTAGAATCAACTTGACCATCCTTTGT
TGGGAATTGGAGACCTTGatcaaagttttttctttcgtCAGTTTCATCAA
TTTCATCAATAACCAGCTGATCATCACTATCACAATCAGAATCAACTTCA
ACTTCATCCAAATCATTGTCATTGTCAGTTCTTCCAACAATAGATAAAGC
CATTTTCAAACAATTCAAACCGTTGAAatgattttccaattttataAGTT
TACAACGTTTGTTGTTTAGTATTTGAAACAAGTAATCTTCTGTTAAAATG
GTGTGCCAAAAATGATAGTACTTCAAACACGTTTCAACATTTCAGTAGAA
AAACTTCTCTCTCTTACTATACTCTAAGTACTCAGAAGCGACGTGCTGTC
GTTAGGGCTTTTTCATTAGTATATGCCAacaataataaaa Coding sequence (CDS) from alignment at sc0000010:612865..614954 >TCONS_00001534 ID=TCONS_00001534|Name=TCONS_00001534|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at sc0000010:612865..614954 (Clytia hemisphaerica)
TTACTGTCCACATTTTTGTTTGTAGTATGACATACTACTAGACACATAAT
ATTTGATCAATTTCTGCTGCTCATCATTCAACCGGTGGGTGATTTCCACG
CCATGTTGTAATAACTTATCTAAAACCTTGATCGAATCGTTATCTCTTTC
CCTCATAGCCCGATCTCTAAATATGGCTAGTTTACTAAAGCTCTCACAAA
ATTGTTCTTTATTTATGTTAAAGAACTCTTCGCTGATTATTCGATAGATG
CAATTGATCAAGTGGTCTCGCTCGTTCTCGCCCTCTCGCAATTGTCGTTT
TAGAATGTTGACGCTTTCTTCTATTTCTCGCTCAACTTTAAGAAAGTTTT
CAGCCTCTTCTTTTTGCTTGGCTTGGTATCTCTTGGACGCGTGATTATTT
CTCTCTaaacgttttttctttttcaagtcaaCCATCGAATTACCATGTTT
TAGTATATCTTTATATTTTCGTCTGGTGTTTCCTGAATCATCTGATGAAT
TAGAATGTGATCTTGAAGCTCTTCTGAATTGAGTAAAAGTACCAACGTGC
TCGGGCGAGGCCACAACACCTTTTGGGCCATTTTCACCACGGTGGAAATC
CGCGGCAATTGTTTTACATTGGTTAGATGTAATACATTCTGTTTGGGTTT
CCACGCTACACTTACCTGAACTCATTCTGCAAATATTTCCATCACCAGCA
ACATAACGATAAATTATATTGCCTTGGTTATTAACCTTAGTACTAGCCAT
TCGATTGCTTGATAGATTATTTGGATTTTCTTCTTCACAAATAACCATTT
GATGAATGTGAACCATTTCATCCCTACAAGGAGGTAGTTCAGCTCTGGAT
AGTAGATTAGAATCAACTTGACCATCCTTTGTTGGGAATTGGAGACCTTG
atcaaagttttttctttcgtCAGTTTCATCAATTTCATCAATAACCAGCT
GATCATCACTATCACAATCAGAATCAACTTCAACTTCATCCAAATCATTG
TCATTGTCAGTTCTTCCAACAATAGATAAAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001534-exon-sc0000010-1491911889:612865..614954 | TCONS_00001534-exon-sc0000010-1491911889:612865..614954 | Clytia hemisphaerica | exon |
| TCONS_00001534-exon-sc0000010-1510915933:612865..614954 | TCONS_00001534-exon-sc0000010-1510915933:612865..614954 | Clytia hemisphaerica | exon |
| TCONS_00001534-exon-sc0000010-1575043694:612865..614954 | TCONS_00001534-exon-sc0000010-1575043694:612865..614954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:612865..614954 . |
Blast
The following BLAST results are available for this feature:
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