TCONS_00014956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014956
Unique NameTCONS_00014956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014956 ID=TCONS_00014956|Name=TCONS_00014956|organism=Clytia hemisphaerica|type=transcript|length=1363bp
TTTCAAAAGTCTTAAATTTTCTATCTGTATGTCTTTTTATTTTAGAATAA
TGGCTCATTTTAAAATTAAAACTAAAACAGCAGAGCTGGAAAAACAAATC
GGTTTTTGCGAAATTAAAGATTTGCCTATCAATTTCTCAAACAAGATTGG
CACGGGGAGTTACGCAAATGTTTACAAACATAAGGTTAGAAGAAAAGACG
CAGCTATAAAAATTTTCAAGATGAACATGACCAAGCAAAATGTACTTAAC
ACCGCTTTCAACTTGAGAAAATTGAAACATATCAATGTATGTCGATTTCG
TGGCTTTTCAATAAGACCATCTGGGTTGGCATTTGAACTGTGTGAGTTAG
ACGTAGAGGGTGAAATTGTTCACGATGTTGCCGAGCTTATGGAAGTTTTT
TGTGAAAACGACTACTACAACTTAAAAGAAAGGTTAGCAATTGTCCAACA
GGCTGGAAAAGGTTTAGTCTATCTTCATGGGGAAAACATTATTCATAAAG
ATTTTAAACCTAATAACTGCCTAGTAACAGGGAGTTTGGAAAATATTGTT
GTTAAAATTGCAGACTTTGATGATGTTTTTAAAATTAAGCAAACGATATC
GTCATCATTGACGACGACAAAATTGAAAGGTACAACCTTGACTTATGTTG
CCCCTGAAGTGCTGCTCGACAATGAACTGCCATCAAAGGAAAGTGATGCT
TATGCATTCAGCATTAGCTTTTACACAATACTTTCTGTTGGAGGTTCCCC
TTGGAAAGCGATAATCCCAATTATGTCCGATGCTTTGGTTGTGTCAGCCT
TAAAAGATGGAAAAAGGCCATCAATAGATGACATGCTGGACCTATACAAA
GATGAGGAGCAAGGTATGAAAGATGCCGTTCACAAACTCATCAAAGATGG
ATGGAGCAGTTTAAAAATTAATAGACCCTGCCTAGAAGAGATTGTTGGGC
GTCTTGATACTTTGTTAAGAAAGAATAATCGACCACAAAGAGGATTGCAA
ATTAAAGATCAAACAAAACTTGCCTTAGATTTTATAGCTAGGGGTGAAGA
CCCTGACAATGTTGAGAAGTTAATGATCGATTCTCAAATAGGTTATGGTG
TGTTCTCCAAATGTAACATATCTCAAGGGGAATTCATTTTGCCATACGAA
GGCGAAATAATCACGCCCAAAGAAGGATTGAAAAGATTAAACGCTTCAGA
AGGAGACCCGAACCGCAGTTTCATATATTTTGTGGAGCACAAATCCGATA
AATATTGAATTGACGCAACAGATACCGATAGGTTGGGACGATATGTAAAC
GACTCAAAAAACTTCAACTGTTTTACAAAAGTAATTGCTGACCCAATGTC
TACTAAGTTACAC
Run BLAST on NCBI

protein sequence of TCONS_00014956-protein

>TCONS_00014956-protein ID=TCONS_00014956-protein|Name=TCONS_00014956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
FKSLKFSICMSFYFRIMAHFKIKTKTAELEKQIGFCEIKDLPINFSNKIG
TGSYANVYKHKVRRKDAAIKIFKMNMTKQNVLNTAFNLRKLKHINVCRFR
GFSIRPSGLAFELCELDVEGEIVHDVAELMEVFCENDYYNLKERLAIVQQ
AGKGLVYLHGENIIHKDFKPNNCLVTGSLENIVVKIADFDDVFKIKQTIS
SSLTTTKLKGTTLTYVAPEVLLDNELPSKESDAYAFSISFYTILSVGGSP
WKAIIPIMSDALVVSALKDGKRPSIDDMLDLYKDEEQGMKDAVHKLIKDG
WSSLKINRPCLEEIVGRLDTLLRKNNRPQRGLQIKDQTKLALDFIARGED
PDNVEKLMIDSQIGYGVFSKCNISQGEFILPYEGEIITPKEGLKRLNASE
GDPNRSFIYFVEHKSDKY
Run BLAST on NCBI

transcript from alignment at sc0000201:4315..7315-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014956 ID=TCONS_00014956|Name=TCONS_00014956|organism=Clytia hemisphaerica|type=transcript|length=3001bp|location=Sequence derived from alignment at sc0000201:4315..7315- (Clytia hemisphaerica)
TTTCAAAAGTCTTAAATTTTCTATCTGTATGTCTTTTTATTTTAGAATAA
TGGCTCATTTTAAAATTAAAACTAAAACAGCAGAGCTGGAAAAACAAATC
GGTTTTTGCGAAATTAAAGATTTGCCTATCAATTTCTCAAACAAGATTGG
CACGGGGAGTTACGCAAATGTTTACAAACATAAGGTTAGAAGAAAAGACG
CAGCTATAAAAATTTTCAAGATGAACATGACCAAGCAAAATGTACTTAAC
ACCGCTTTCAACTTGAGAAAATTGAAACATATCAATGTATGTCGATTTCG
TGGCTTTTCAATAAGACCATCTGGGTTGGCATTTGAACTGTGTGAGTTAG
ACGTAGAGGGTGAAATTGTTCACGATGTTGCCGAGCTTATGGAAGTTTTT
TGTGAAAACGACTACTACAACTTAAAAGAAAGGTTAGCAATTGTCCAACA
GGCTGGAAAAGGTTTAGTCTATCTTCATGGGGAAAACATTATTCATAAAG
ATTTTAAACCTAATAACTGCCTAGTAACAGGGAGTTTGGAAAATATTGTT
GTTAAAATTGCAGACTTTGATGATGTTTTTAAAATTAAGCAAACGATATC
GTCATCATTGACGACGACAAAATTGAAAGGTACAACCTTGACTTATGTTG
CCCCTGAAGTGCTGCTCGACAATGAACTGCCATCAAAGGAAAGTGATGCT
TATGCATTCAGCATTAGCTTTTACACAATACTTTCTGTTGGAGGTTCCCC
TTGGAAAGCGATAATCCCAATTATGTCCGATGCTTTGGTTGTGTCAGCCT
TAAAAGATGGAAAAAGGCCATCAATAGATGACATGCTGGACCTATACAAA
GATGAGGAGCAAGGTATGAAAGATGCCGTTCACAAACTCATCAAAGATGG
ATGGAGCAGTTTAAAAATTAATAGACCCTGCCTAGAAGAGGTTTGTTAAA
TTAAATACATTAAAAACTTATTAATGTCAAGAGTTATGTCTAACCAGTTT
TAAAACATGAAACAAATCCCGTGGGTCAGGGTACCTTTTTTCACCTTCAC
GAGTCCTGGGTAGGGTTGCAAAAACACCAAAATAGTAAAATCAGTCCCTC
GTAGGGTACCTTTTTGGAAGATTTAGGAAAAAAATAGGAAATTTTGAGAA
AGTTTTTGAATTTTAGTCTCATTCAAGGTCAATTAAAAAAAAATAAATGA
GTCCCACGTAGGGTCAATACCTAGCGGAATTGAATCATGGAATATTCTCT
TTTAAAATTGCATCATAATCATCATATTTTGGGCCTATCAACGAAAATTG
TTGCCATTTTTCTTTCAAAAATGATTTGAATTTGATATAGAAATGAACGG
ATTATCAGATAGGTATAAATATTTTCAAAAATGTTATATAGATGTTACCA
AACAGGAAAAATGTTTAAAAAACTTAAGAATGTTCTTTCTAAACCTTAGA
TTGTTGGGCGTCTTGATACTTTGTTAAGAAAGGTAAGTTTCTTTTTGATA
CCAATCATCATTACCAAATTGTACCCTTTCGCAGTACTTATTTTTCCAAA
AGTACCCAGATGCTTGTGTTCAATGTGAGGTAGGGGTGTTATACATTTTT
TAAAATCATGTATGTGAAAGATTAGGAATGTGTCCTTTAGAAAAGAAAAG
TGATTATAAAACCCTAAAAAGAATCAAACGTAAAAACACGTAATATTCTT
GAAAATACATAATGTCTTAAAAAATATTCTTCATGTTTTCCTCTCAATTT
TATTTTCGAAAAATACTTAACCAATTGAAATATTATACTAAAAATTATCT
TTCCAACGCTGTATAACTTTTTAATGAAAAAAAATCGTTTTAAACGTAAA
GTGTCCACAATCTTTTGAAACAATGTTTAATAATCACAGACAGGCTACAG
AAAAATTTTAAATATCTAAAAAATTTCCTTATCTAGAATAATCGACCACA
AAGAGGATTGCAAATTAAAGATCAAACAAAACTTGCCTTAGATTTTATAG
CTAGGGGTGAAGACCCTGACAATGTTGAGAAGTTAATGATCGATTCTCAA
ATAGGTAACTATAACAAAGAAAGTGATCTGCTAAATATTTACTTAAATCT
ATCTATTTTTATTTCTTCTATTAAGAGTTAGTTATTAGTTTTTTTATATA
ACGCATTAGAAATCTATTATATTTTCAATGGTCATTAAATTGATTTTCAC
ATTTCATAACATCTGGAACTTTTTCTCATGTATGTTTTGTCTGTAAAATA
TGTTTTGCTATTTTAAAGGTTATGGTGTGTTCTCCAAATGTAACATATCT
CAAGGGGAATTCATTTTGCCATACGAAGGCGAAATAATCACGCCCAAAGA
AGGATTGAAAAGATTAAACGCTTCAGAAGGAGACCCGAACCGCAGTTTCA
TATATTTTGTGGAGCACAAATCCGATAAATATTGGTAACTATTTTTAAGA
GTTATTTTGGTATTTCTTCACCAAGTTGAATGATTTCGACCGCTATGACG
AGGGTCTAATATCAATAAATTTAATATACGTAGGGCGAACATAAAACCAC
TTTGAATTTTAAAACTACGTTCTTATTAAAATCAATCTCAGAACATTTGG
TAACTATGTTTCCAAAACTTTTGAAACAAACCTTGAATCATACTGTGAAG
CAAAATTATATACNCTATGTTTCCAAAACTTTTGAAACAAACCTTGAATC
ATACTGTGAAGCAATATATACTGTCTTAGTCAAGTCTAATTCACTGTATA
AAGACGTTTTAATAGATTTTTTATTTGAAAAATTACAGCCTTTAAGAAAT
AGGTCAAAAGGGGAATAAAGAAAGTCTTGTATGAAGGATAAGTCTATGGT
ATTTAACTTTTACTCCTAAAAACATTTAAATCTTTATTTCTACAGAATTG
ACGCAACAGATACCGATAGGTTGGGACGATATGTAAACGACTCAAAAAAC
TTCAACTGTTTTACAAAAGTAATTGCTGACCCAATGTCTACTAAGTTACA
C

Coding sequence (CDS) from alignment at sc0000201:4315..7315-

>TCONS_00014956 ID=TCONS_00014956|Name=TCONS_00014956|organism=Clytia hemisphaerica|type=CDS|length=6285bp|location=Sequence derived from alignment at sc0000201:4315..7315- (Clytia hemisphaerica)
AGTTATGGTGTGTTCTCCAAATGTAACATATCTCAAGGGGAATTCATTTT
GCCATACGAAGGCGAAATAATCACGCCCAAAGAAGGATTGAAAAGATTAA
ACGCTTCAGAAGGAGACCCGAACCGCAGTTTCATATATTTTGTGGAGCAC
AAATCCGATAAATATTGAATAATCGACCACAAAGAGGATTGCAAATTAAA
GATCAAACAAAACTTGCCTTAGATTTTATAGCTAGGGGTGAAGACCCTGA
CAATGTTGAGAAGTTAATGATCGATTCTCAAATAGATTGTTGGGCGTCTT
GATACTTTGTTAAGAAAGTTCAAAAGTCTTAAATTTTCTATCTGTATGTC
TTTTTATTTTAGAATAATGGCTCATTTTAAAATTAAAACTAAAACAGCAG
AGCTGGAAAAACAAATCGGTTTTTGCGAAATTAAAGATTTGCCTATCAAT
TTCTCAAACAAGATTGGCACGGGGAGTTACGCAAATGTTTACAAACATAA
GGTTAGAAGAAAAGACGCAGCTATAAAAATTTTCAAGATGAACATGACCA
AGCAAAATGTACTTAACACCGCTTTCAACTTGAGAAAATTGAAACATATC
AATGTATGTCGATTTCGTGGCTTTTCAATAAGACCATCTGGGTTGGCATT
TGAACTGTGTGAGTTAGACGTAGAGGGTGAAATTGTTCACGATGTTGCCG
AGCTTATGGAAGTTTTTTGTGAAAACGACTACTACAACTTAAAAGAAAGG
TTAGCAATTGTCCAACAGGCTGGAAAAGGTTTAGTCTATCTTCATGGGGA
AAACATTATTCATAAAGATTTTAAACCTAATAACTGCCTAGTAACAGGGA
GTTTGGAAAATATTGTTGTTAAAATTGCAGACTTTGATGATGTTTTTAAA
ATTAAGCAAACGATATCGTCATCATTGACGACGACAAAATTGAAAGGTAC
AACCTTGACTTATGTTGCCCCTGAAGTGCTGCTCGACAATGAACTGCCAT
CAAAGGAAAGTGATGCTTATGCATTCAGCATTAGCTTTTACACAATACTT
TCTGTTGGAGGTTCCCCTTGGAAAGCGATAATCCCAATTATGTCCGATGC
TTTGGTTGTGTCAGCCTTAAAAGATGGAAAAAGGCCATCAATAGATGACA
TGCTGGACCTATACAAAGATGAGGAGCAAGGTATGAAAGATGCCGTTCAC
AAACTCATCAAAGATGGATGGAGCAGTTTAAAAATTAATAGACCCTGCCT
AGAAGAGAGTTATGGTGTGTTCTCCAAATGTAACATATCTCAAGGGGAAT
TCATTTTGCCATACGAAGGCGAAATAATCACGCCCAAAGAAGGATTGAAA
AGATTAAACGCTTCAGAAGGAGACCCGAACCGCAGTTTCATATATTTTGT
GGAGCACAAATCCGATAAATATTGAATAATCGACCACAAAGAGGATTGCA
AATTAAAGATCAAACAAAACTTGCCTTAGATTTTATAGCTAGGGGTGAAG
ACCCTGACAATGTTGAGAAGTTAATGATCGATTCTCAAATAGATTGTTGG
GCGTCTTGATACTTTGTTAAGAAAGTTCAAAAGTCTTAAATTTTCTATCT
GTATGTCTTTTTATTTTAGAATAATGGCTCATTTTAAAATTAAAACTAAA
ACAGCAGAGCTGGAAAAACAAATCGGTTTTTGCGAAATTAAAGATTTGCC
TATCAATTTCTCAAACAAGATTGGCACGGGGAGTTACGCAAATGTTTACA
AACATAAGGTTAGAAGAAAAGACGCAGCTATAAAAATTTTCAAGATGAAC
ATGACCAAGCAAAATGTACTTAACACCGCTTTCAACTTGAGAAAATTGAA
ACATATCAATGTATGTCGATTTCGTGGCTTTTCAATAAGACCATCTGGGT
TGGCATTTGAACTGTGTGAGTTAGACGTAGAGGGTGAAATTGTTCACGAT
GTTGCCGAGCTTATGGAAGTTTTTTGTGAAAACGACTACTACAACTTAAA
AGAAAGGTTAGCAATTGTCCAACAGGCTGGAAAAGGTTTAGTCTATCTTC
ATGGGGAAAACATTATTCATAAAGATTTTAAACCTAATAACTGCCTAGTA
ACAGGGAGTTTGGAAAATATTGTTGTTAAAATTGCAGACTTTGATGATGT
TTTTAAAATTAAGCAAACGATATCGTCATCATTGACGACGACAAAATTGA
AAGGTACAACCTTGACTTATGTTGCCCCTGAAGTGCTGCTCGACAATGAA
CTGCCATCAAAGGAAAGTGATGCTTATGCATTCAGCATTAGCTTTTACAC
AATACTTTCTGTTGGAGGTTCCCCTTGGAAAGCGATAATCCCAATTATGT
CCGATGCTTTGGTTGTGTCAGCCTTAAAAGATGGAAAAAGGCCATCAATA
GATGACATGCTGGACCTATACAAAGATGAGGAGCAAGGTATGAAAGATGC
CGTTCACAAACTCATCAAAGATGGATGGAGCAGTTTAAAAATTAATAGAC
CCTGCCTAGAAGAGAGTTATGGTGTGTTCTCCAAATGTAACATATCTCAA
GGGGAATTCATTTTGCCATACGAAGGCGAAATAATCACGCCCAAAGAAGG
ATTGAAAAGATTAAACGCTTCAGAAGGAGACCCGAACCGCAGTTTCATAT
ATTTTGTGGAGCACAAATCCGATAAATATTGAATAATCGACCACAAAGAG
GATTGCAAATTAAAGATCAAACAAAACTTGCCTTAGATTTTATAGCTAGG
GGTGAAGACCCTGACAATGTTGAGAAGTTAATGATCGATTCTCAAATAGA
TTGTTGGGCGTCTTGATACTTTGTTAAGAAAGTTCAAAAGTCTTAAATTT
TCTATCTGTATGTCTTTTTATTTTAGAATAATGGCTCATTTTAAAATTAA
AACTAAAACAGCAGAGCTGGAAAAACAAATCGGTTTTTGCGAAATTAAAG
ATTTGCCTATCAATTTCTCAAACAAGATTGGCACGGGGAGTTACGCAAAT
GTTTACAAACATAAGGTTAGAAGAAAAGACGCAGCTATAAAAATTTTCAA
GATGAACATGACCAAGCAAAATGTACTTAACACCGCTTTCAACTTGAGAA
AATTGAAACATATCAATGTATGTCGATTTCGTGGCTTTTCAATAAGACCA
TCTGGGTTGGCATTTGAACTGTGTGAGTTAGACGTAGAGGGTGAAATTGT
TCACGATGTTGCCGAGCTTATGGAAGTTTTTTGTGAAAACGACTACTACA
ACTTAAAAGAAAGGTTAGCAATTGTCCAACAGGCTGGAAAAGGTTTAGTC
TATCTTCATGGGGAAAACATTATTCATAAAGATTTTAAACCTAATAACTG
CCTAGTAACAGGGAGTTTGGAAAATATTGTTGTTAAAATTGCAGACTTTG
ATGATGTTTTTAAAATTAAGCAAACGATATCGTCATCATTGACGACGACA
AAATTGAAAGGTACAACCTTGACTTATGTTGCCCCTGAAGTGCTGCTCGA
CAATGAACTGCCATCAAAGGAAAGTGATGCTTATGCATTCAGCATTAGCT
TTTACACAATACTTTCTGTTGGAGGTTCCCCTTGGAAAGCGATAATCCCA
ATTATGTCCGATGCTTTGGTTGTGTCAGCCTTAAAAGATGGAAAAAGGCC
ATCAATAGATGACATGCTGGACCTATACAAAGATGAGGAGCAAGGTATGA
AAGATGCCGTTCACAAACTCATCAAAGATGGATGGAGCAGTTTAAAAATT
AATAGACCCTGCCTAGAAGAGAGTTATGGTGTGTTCTCCAAATGTAACAT
ATCTCAAGGGGAATTCATTTTGCCATACGAAGGCGAAATAATCACGCCCA
AAGAAGGATTGAAAAGATTAAACGCTTCAGAAGGAGACCCGAACCGCAGT
TTCATATATTTTGTGGAGCACAAATCCGATAAATATTGAATAATCGACCA
CAAAGAGGATTGCAAATTAAAGATCAAACAAAACTTGCCTTAGATTTTAT
AGCTAGGGGTGAAGACCCTGACAATGTTGAGAAGTTAATGATCGATTCTC
AAATAGATTGTTGGGCGTCTTGATACTTTGTTAAGAAAGTTCAAAAGTCT
TAAATTTTCTATCTGTATGTCTTTTTATTTTAGAATAATGGCTCATTTTA
AAATTAAAACTAAAACAGCAGAGCTGGAAAAACAAATCGGTTTTTGCGAA
ATTAAAGATTTGCCTATCAATTTCTCAAACAAGATTGGCACGGGGAGTTA
CGCAAATGTTTACAAACATAAGGTTAGAAGAAAAGACGCAGCTATAAAAA
TTTTCAAGATGAACATGACCAAGCAAAATGTACTTAACACCGCTTTCAAC
TTGAGAAAATTGAAACATATCAATGTATGTCGATTTCGTGGCTTTTCAAT
AAGACCATCTGGGTTGGCATTTGAACTGTGTGAGTTAGACGTAGAGGGTG
AAATTGTTCACGATGTTGCCGAGCTTATGGAAGTTTTTTGTGAAAACGAC
TACTACAACTTAAAAGAAAGGTTAGCAATTGTCCAACAGGCTGGAAAAGG
TTTAGTCTATCTTCATGGGGAAAACATTATTCATAAAGATTTTAAACCTA
ATAACTGCCTAGTAACAGGGAGTTTGGAAAATATTGTTGTTAAAATTGCA
GACTTTGATGATGTTTTTAAAATTAAGCAAACGATATCGTCATCATTGAC
GACGACAAAATTGAAAGGTACAACCTTGACTTATGTTGCCCCTGAAGTGC
TGCTCGACAATGAACTGCCATCAAAGGAAAGTGATGCTTATGCATTCAGC
ATTAGCTTTTACACAATACTTTCTGTTGGAGGTTCCCCTTGGAAAGCGAT
AATCCCAATTATGTCCGATGCTTTGGTTGTGTCAGCCTTAAAAGATGGAA
AAAGGCCATCAATAGATGACATGCTGGACCTATACAAAGATGAGGAGCAA
GGTATGAAAGATGCCGTTCACAAACTCATCAAAGATGGATGGAGCAGTTT
AAAAATTAATAGACCCTGCCTAGAAGAGAGTTATGGTGTGTTCTCCAAAT
GTAACATATCTCAAGGGGAATTCATTTTGCCATACGAAGGCGAAATAATC
ACGCCCAAAGAAGGATTGAAAAGATTAAACGCTTCAGAAGGAGACCCGAA
CCGCAGTTTCATATATTTTGTGGAGCACAAATCCGATAAATATTGAATAA
TCGACCACAAAGAGGATTGCAAATTAAAGATCAAACAAAACTTGCCTTAG
ATTTTATAGCTAGGGGTGAAGACCCTGACAATGTTGAGAAGTTAATGATC
GATTCTCAAATAGATTGTTGGGCGTCTTGATACTTTGTTAAGAAAGTTCA
AAAGTCTTAAATTTTCTATCTGTATGTCTTTTTATTTTAGAATAATGGCT
CATTTTAAAATTAAAACTAAAACAGCAGAGCTGGAAAAACAAATCGGTTT
TTGCGAAATTAAAGATTTGCCTATCAATTTCTCAAACAAGATTGGCACGG
GGAGTTACGCAAATGTTTACAAACATAAGGTTAGAAGAAAAGACGCAGCT
ATAAAAATTTTCAAGATGAACATGACCAAGCAAAATGTACTTAACACCGC
TTTCAACTTGAGAAAATTGAAACATATCAATGTATGTCGATTTCGTGGCT
TTTCAATAAGACCATCTGGGTTGGCATTTGAACTGTGTGAGTTAGACGTA
GAGGGTGAAATTGTTCACGATGTTGCCGAGCTTATGGAAGTTTTTTGTGA
AAACGACTACTACAACTTAAAAGAAAGGTTAGCAATTGTCCAACAGGCTG
GAAAAGGTTTAGTCTATCTTCATGGGGAAAACATTATTCATAAAGATTTT
AAACCTAATAACTGCCTAGTAACAGGGAGTTTGGAAAATATTGTTGTTAA
AATTGCAGACTTTGATGATGTTTTTAAAATTAAGCAAACGATATCGTCAT
CATTGACGACGACAAAATTGAAAGGTACAACCTTGACTTATGTTGCCCCT
GAAGTGCTGCTCGACAATGAACTGCCATCAAAGGAAAGTGATGCTTATGC
ATTCAGCATTAGCTTTTACACAATACTTTCTGTTGGAGGTTCCCCTTGGA
AAGCGATAATCCCAATTATGTCCGATGCTTTGGTTGTGTCAGCCTTAAAA
GATGGAAAAAGGCCATCAATAGATGACATGCTGGACCTATACAAAGATGA
GGAGCAAGGTATGAAAGATGCCGTTCACAAACTCATCAAAGATGGATGGA
GCAGTTTAAAAATTAATAGACCCTGCCTAGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008361XLOC_008361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014956-exon-sc0000201-1575043694:6376..7315TCONS_00014956-exon-sc0000201-1575043694:6376..7315Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1575043694:5834..5866TCONS_00014956-exon-sc0000201-1575043694:5834..5866Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1575043694:5262..5379TCONS_00014956-exon-sc0000201-1575043694:5262..5379Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1575043694:4882..5047TCONS_00014956-exon-sc0000201-1575043694:4882..5047Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1575043694:4315..4420TCONS_00014956-exon-sc0000201-1575043694:4315..4420Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1510915933:6376..7315TCONS_00014956-exon-sc0000201-1510915933:6376..7315Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1510915933:5834..5866TCONS_00014956-exon-sc0000201-1510915933:5834..5866Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1510915933:5262..5379TCONS_00014956-exon-sc0000201-1510915933:5262..5379Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1510915933:4882..5047TCONS_00014956-exon-sc0000201-1510915933:4882..5047Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1510915933:4315..4420TCONS_00014956-exon-sc0000201-1510915933:4315..4420Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1491911889:6376..7315TCONS_00014956-exon-sc0000201-1491911889:6376..7315Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1491911889:5834..5866TCONS_00014956-exon-sc0000201-1491911889:5834..5866Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1491911889:5262..5379TCONS_00014956-exon-sc0000201-1491911889:5262..5379Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1491911889:4882..5047TCONS_00014956-exon-sc0000201-1491911889:4882..5047Clytia hemisphaericaexon
TCONS_00014956-exon-sc0000201-1491911889:4315..4420TCONS_00014956-exon-sc0000201-1491911889:4315..4420Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014956-proteinTCONS_00014956-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:4315..7315 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16824	1.37906	0.835419	0.408663	3.02651	1.8674	3.04345	2.70123	2.56477	2.95225	3.11471	2.64126	1.96285	2.56929	3.00261	4.0653	4.86964	3.28806	2.02621	4.03537	3.4183	3.91459	1.76248	2.78809	1.48535	1.88535	1.47543	1.07974	1.12605	1.42539
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR008271Ser/Thr_kinase_AS
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00014956 vs. Swiss-Prot (Human)
Match: RAF1 (RAF proto-oncogene serine/threonine-protein kinase OS=Homo sapiens GN=RAF1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.624e-18
Identity = 85/303 (28.05%), Postives = 144/303 (47.52%), Query Frame = 2 
Query:  104 FCEIKDLPINFSNKIGTGSYANVYKHKVRRKDAAIKIFKM-NMTK---QNVLNTAFNLRKLKHINVCRFRGFSIRPS-GLAFELCELDVEGEIVHDVAELMEVFCENDYYNLKERLAIVQQAGKGLVYLHGENIIHKDFKPNNCLVTGSLENIVVKIADFDDVFKIXXXXXXXXXXXXXXXXXXXYVAPEV--LLDNELPSKESDAYAFSISFYTILSVGGSPWKAIIPIMSDALVVSALKDGKRPSIDDMLDLYKDEEQGMKDAVHKLIKDGWSSLKINRPCLEEIVGRLDTL---LRKNNR 982
            + EI+   +  S +IG+GS+  VYK K    D A+KI K+ + T    Q   N    LRK +H+N+  F G+  + +  +  + CE    G  ++    + E       + + + + I +Q  +G+ YLH +NIIH+D K NN  +    E + VKI DF       ++  S     +    ++ ++APEV  + DN   S +SD Y++ I  Y +++ G  P+  I     D ++    +    P   D+  LYK+  + MK    +L+ D    +K  RP   +I+  ++ L   L K NR
Sbjct:  341 YWEIEASEVMLSTRIGSGSFGTVYKGKWH-GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCE----GSSLYKHLHVQET-----KFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLH---EGLTVKIGDFG--LATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHI--NNRDQIIFMVGRGYASP---DLSKLYKNCPKAMK----RLVADCVKKVKEERPLFPQILSSIELLQHSLPKINR 618
The following BLAST results are available for this feature:
BLAST of TCONS_00014956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAF11.624e-1828.05RAF proto-oncogene serine/threonine-protein kinase... [more]
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