|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014727 ID=TCONS_00014727|Name=TCONS_00014727|organism=Clytia hemisphaerica|type=transcript|length=1892bp
TAAACTTCTATCTATCGCAAAATAGACTTTGATTGAAGTTGACGCTTGTT
CAGAAAGATAAACAGTATAAGGATGAAAGCGGATGCCATCTGGTTAATTT
TTGCTTCAAATTAATATATAACACAAAAATTATGAAAGTATAATTTCACT
CAGAGTGAGGACATCAGACCACGAAAATCTGATTTAAGCTAACCCTCCAG
ACGTTGCGAAGCTAATCTTTTCGTCAGTTTAAGTGATATTcacacaaata
tttttttgggaaTCAAAGACAAAATGAAACACGCATTCACATTTTTCGTG
TTCCAACTGTTCTGCTTGGTGGAATTTTCACATCAAAGGTATATTGAAGA
TAGAGATGGACCTTATCGCAAACCCATGCCTTTGATGCTTCACATGGACA
ATATTGAATCGCCGTCCTTCCCACTTCCTAACGATGAAATGCAAGGTGGT
ATGCACGACGCTCAAAACCAGCCCTTCGCTCTCCCGAATGATGAAGTGCA
AGGCCGTATGCATGACACAGCGAAAGATGATGGACCTTATCGCAAACCCA
TGCCTTTGATGCTTCACATGGACAATATTGAATCGCATTCCTCCCCGCCA
CTTCCAAACGATGAAGTACAGGGCGGTATACATGACGCCCAAAGTCAACC
CTTCGCCCTCCCTAATGATGAAGTTCAGGGCGGTATGCATGATGTTCAAA
ACCAACCCTTCGCTCTCCCAAATGATCTATTTCAGGGCGGTATGCATGAC
TCTCAGAAAGGAATGCAACGTGATTCGTGGTCCAAATGAAATTATGGGAA
GTCTGAAATTACAAAGAGGTTTGCAAGACACAAGAGAAAAAGATTGTACT
TGCCAAAAAAATACAGGACGCCCTCACTTAGACAGAAGCATGTTAAATGG
TACAAACGTAGCAAataattttcttcgatttttatATTTAGAACACTTAG
TAGCATTGTTAAATAAAGGTATGATATATTTTTAGCCAGTTTAAATTACT
TTCAAATCACAGTCCACATTATTTctcaatatctttccaacaacaTGAAA
ATAATTAAGAGCAACCATAACAAATTGTTATCGATGGACCTGTAACAGAC
TGAGCCACTTTTTCGAGATGTAGGACCTCTCACATTGGTGACTGCGTTTA
AATCTAGAACTGTGTCTGTGAAATTGGAAAACTCTACAAAGTCAGCGATC
ACTATATTAATACCATTTTTTCCAATCTGTTTACCGTGTAACCAGTCCCT
TATTTTTCGTGTCGCTTTACTTGACACCCAACTTCTCAAGGTTGCATTTT
CTGAAATGCCAGCGATCACGACTTCCATCCAGTGTGGCTGCATGATCCCT
TGAGTCACATAGAAAGTATCAGTGCCTTGTTTACCTCTATTTGCATAATT
TAAATCAAGGAAGTGCAACCATGACCATGTTTGCGTGAATTGTTTATAAT
CGAATGGTGATCGAATTGACGCATGCGCGTGAAGAATCGAATCTTTTTTG
TTATTGTCACGTGATCGCTTGAATACAATAACGCTAATGTTTTGCTGCCA
CAGATCTTTCAGTTTATAActttgaatgttttctgcaaATATGATACGGT
CAGAAAAATAATCTTGTAACAAATCTGTAACATTCTTTAGAGCATTCTCT
TTGCTGATTTCATGGTTTGTTGCCATACTTTGCAAGTCCAGTAAGATGAT
TTCTTTGGAGTATTTTATGATGAAGTCTTTGATCTGAGTAAATATGTCGT
GGAGTGTTGTCCCGAATAGACCATGAACGATTCGACTGAAAACGAATAAC
ATTAAATGCGTTGTCTATAAACTGACCATATTTTTCACAAACGTAAAGAA
ACAAACCCACCCTTCAACACAACTTCATGGTGGTTTTCGAAA Run BLAST on NCBI transcript from alignment at sc0000197:284238..286644- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014727 ID=TCONS_00014727|Name=TCONS_00014727|organism=Clytia hemisphaerica|type=transcript|length=2407bp|location=Sequence derived from alignment at sc0000197:284238..286644- (Clytia hemisphaerica)
TAAACTTCTATCTATCGCAAAATAGACTTTGATTGAAGTTGACGCTTGTT
CAGAAAGATAAACAGTATAAGGATGAAAGCGGATGCCATCTGGTTAATTT
TTGCTTCAAATTAATATATAACACAAAAATTATGAAAGTATAATTTCACT
CAGAGTGAGGACATCAGACCACGAAAATCTGATTTAAGCTAACCCTCCAG
ACGTTGCGAAGCTAATCTTTTCGTCAGTTTAAGTGATATTCACACAAATA
TTTTTTTGGGAATCAAAGACAAAATGAAACACGCATTCACATTTTTCGTG
TTCCAACTGTTCTGCTTGGTGGAATTTTCACATCAAAGGTATATTGAAGG
TATGAATACACACTCTTTAACCCCCCCCGTAATCTTCAATCAACTTCAAC
CGTCAATCTAATTTGGGGCTTTGTCATCACCCTAAAGCAACCATTTTTCA
TTCTCGTATTCTTATTAATCTTAACACTTGTTCAGAGTTACTTATTTGAT
CATTGATCACACAGCGGGGTTACTTAAGGATAGAGAACTTAAATTACATT
ATTACATAAATTCATAACTTTTCCTTCTAGATAGAGATGGACCTTATCGC
AAACCCATGCCTTTGATGCTTCACATGGACAATATTGAATCGCCGTCCTT
CCCACTTCCTAACGATGAAATGCAAGGTGGTATGCACGACGCTCAAAACC
AGCCCTTCGCTCTCCCGAATGATGAAGTGCAAGGCCGTATGCATGACACA
GCGAAAGATGGTATGCATTCTATAATTTTAGAAATTTAAGAGATTTTTCA
AAGGACCTTTATGGATACTTTTCTACTGTCCTTCAAACTTCCAACTTAAA
ATTTCTCAAAACAAATTGAGAGTTTTTATCTGTGATATCCTATTTCTTTA
GCCTAAACAGTAGTGTTATTTCCTTTCTAGATGGACCTTATCGCAAACCC
ATGCCTTTGATGCTTCACATGGACAATATTGAATCGCATTCCTCCCCGCC
ACTTCCAAACGATGAAGTACAGGGCGGTATACATGACGCCCAAAGTCAAC
CCTTCGCCCTCCCTAATGATGAAGTTCAGGGCGGTATGCATGATATCCAA
AGTCAACCCTTCGCCCTCCCTAATAATGAAGTTCAGGGCGGTATGCATGA
CGTTCAAAACCAGCCCTTCGCCCTCCCTAATGATGAAGTTCAGGGCGGTA
TGCATGACGTTCAAAACCAACCCTTCGCTCTCCCAAATGATCTATTTCAG
GGCGGTATGCATGACTCTCAGAAAGGAATGCAACGTGATTCGTGGTCCAA
ATGAAATTATGGGAAGTCTGAAATTACAAAGAGGTTTGCAAGACACAAGA
GAAAAAGATTGTACTTGCCAAAAAAATACAGGACGCCCTCACTTAGACAG
AAGCATGTTAAATGGTACAAACGTAGCAAATAATTTTCTTCGATTTTTAT
ATTTAGAACACTTAGTAGCATTGTTAAATAAAGGTATGATATATTTTTAG
CCAGTTTAAATTACTTTCAAATCACAGTCCACATTATTTCTCAATATCTT
TCCAACAACATGAAAATAATTAAGAGCAACCATAACAAATTGTTATCGAT
GGACCTGTAACAGACTGAGCCACTTTTTCGAGATGTAGGACCTCTCACAT
TGGTGACTGCGTTTAAATCTAGAACTGTGTCTGTGAAATTGGAAAACTCT
ACAAAGTCAGCGATCACTATATTAATACCATTTTTTCCAATCTGTTTACC
GTGTAACCAGTCCCTTATTTTTCGTGTCGCTTTACTTGACACCCAACTTC
TCAAGGTTGCATTTTCTGAAATGCCAGCGATCACGACTTCCATCCAGTGT
GGCTGCATGATCCCTTGAGTCACATAGAAAGTATCAGTGCCTTGTTTACC
TCTATTTGCATAATTTAAATCAAGGAAGTGCAACCATGACCATGTTTGCG
TGAATTGTTTATAATCGAATGGTGATCGAATTGACGCATGCGCGTGAAGA
ATCGAATCTTTTTTGTTATTGTCACGTGATCGCTTGAATACAATAACGCT
AATGTTTTGCTGCCACAGATCTTTCAGTTTATAACTTTGAATGTTTTCTG
CAAATATGATACGGTCAGAAAAATAATCTTGTAACAAATCTGTAACATTC
TTTAGAGCATTCTCTTTGCTGATTTCATGGTTTGTTGCCATACTTTGCAA
GTCCAGTAAGATGATTTCTTTGGAGTATTTTATGATGAAGTCTTTGATCT
GAGTAAATATGTCGTGGAGTGTTGTCCCGAATAGACCATGAACGATTCGA
CTGAAAACGAATAACATTAAATGCGTTGTCTATAAACTGACCATATTTTT
CACAAACGTAAAGAAACAAACCCACCCTTCAACACAACTTCATGGTGGTT
TTCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014727-exon-sc0000197-1575043694:286296..286644 | TCONS_00014727-exon-sc0000197-1575043694:286296..286644 | Clytia hemisphaerica | exon |
| TCONS_00014727-exon-sc0000197-1575043694:285885..286064 | TCONS_00014727-exon-sc0000197-1575043694:285885..286064 | Clytia hemisphaerica | exon |
| TCONS_00014727-exon-sc0000197-1575043694:285551..285714 | TCONS_00014727-exon-sc0000197-1575043694:285551..285714 | Clytia hemisphaerica | exon |
| TCONS_00014727-exon-sc0000197-1575043694:284238..285436 | TCONS_00014727-exon-sc0000197-1575043694:284238..285436 | Clytia hemisphaerica | exon |
| TCONS_00014727-exon-sc0000197-1510915933:286296..286644 | TCONS_00014727-exon-sc0000197-1510915933:286296..286644 | Clytia hemisphaerica | exon |
| TCONS_00014727-exon-sc0000197-1510915933:285885..286064 | TCONS_00014727-exon-sc0000197-1510915933:285885..286064 | Clytia hemisphaerica | exon |
| TCONS_00014727-exon-sc0000197-1510915933:285551..285714 | TCONS_00014727-exon-sc0000197-1510915933:285551..285714 | Clytia hemisphaerica | exon |
| TCONS_00014727-exon-sc0000197-1510915933:284238..285436 | TCONS_00014727-exon-sc0000197-1510915933:284238..285436 | Clytia hemisphaerica | exon |
| TCONS_00014727-exon-sc0000197-1491911889:286296..286644 | TCONS_00014727-exon-sc0000197-1491911889:286296..286644 | Clytia hemisphaerica | exon |
| TCONS_00014727-exon-sc0000197-1491911889:285885..286064 | TCONS_00014727-exon-sc0000197-1491911889:285885..286064 | Clytia hemisphaerica | exon |
| TCONS_00014727-exon-sc0000197-1491911889:285551..285714 | TCONS_00014727-exon-sc0000197-1491911889:285551..285714 | Clytia hemisphaerica | exon |
| TCONS_00014727-exon-sc0000197-1491911889:284238..285436 | TCONS_00014727-exon-sc0000197-1491911889:284238..285436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000197 | supercontig | sc0000197:284238..286644 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017946 | PLC-like_Pdiesterase_TIM-brl |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008081 | phosphoric diester hydrolase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
| molecular_function |
GO:0008081 |
phosphoric diester hydrolase activity |
Blast
BLAST of TCONS_00014727 vs. Swiss-Prot (Human)
Match: PLCX3 (PI-PLC X domain-containing protein 3 OS=Homo sapiens GN=PLCXD3 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 7.017e-19 Identity = 57/222 (25.68%), Postives = 104/222 (46.85%), Query Frame = -1
Query: 1140 VHGLFGTTLHDIFTQIKDFIIKYSKEIILLDLQSMATNHEISKENALKNVTDLLQDYFSDRIIFAENIQSYKLKDLWQQNISVIVFKRSRDNNKKDSILHAHASIRSPFDYKQFTQTWSW---------LHFLDLNYANRGKQGTDTFYVTQGIMQPHWMEVVIAGISENATLRSWVSSKATRKIRDWLHGKQIGKNGINIVIADFVEFSNFTDTVLDLNAV 1778
HGLF +++ +I F+ + KE++ LD + E + +L+D + +++ A Q LK LW+++ V+VF H+ ++ PF + W + FL + R K+G+ F+++Q ++ P V+ G++ LR ++ +A + W+ ++ G++GINIV ADFVE +F TV+ LN V
Sbjct: 113 AHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEK----LVQMLKDIYGNKMCPAIFAQEVSLKYLWEKDYQVLVF------------YHSPVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGS--FFISQVVLTPK-ASTVVKGVASG--LRETITERALPAMMQWVRTQKPGESGINIVTADFVELGDFISTVIKLNYV 313
The following BLAST results are available for this feature:
|
