TCONS_00001472 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001472
Unique Name	TCONS_00001472
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1357

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000010:414932..423916-

transcript sequence

>TCONS_00001472 ID=TCONS_00001472|Name=TCONS_00001472|organism=Clytia hemisphaerica|type=transcript|length=1357bp
AACGTATTGTCAAAAAACCTACACGATAGAGCTTATATAATCAAAATTAA
ACCCTTATGAAAAACGCAGTCGACCTTTATTTTAATCATAACAGAAGTCA
TTTTTTGGTTCGATATAGAGAATCACGGGAAAAAGAAACACGTtaaagtt
aaaagtttttttgagagAGAATACGCTTTTGATTCGgtttttttgagatt
tgagaATTTCGTCAGATCATGGATTGGATTTCAAGGTTTAGTTCCAATTC
AAAGAGAAGATTGAGAAGAAGTGTTTCAACGTTCAGTATCTTTGGCGGAG
GAGaaataAAAGAGATCGAAGTGACAGGTGAACGACCTGATGAATCAAAT
ACTGATATGAAGAAACAGAAGAAATTACAACGAAGAAAATCCATTGATAA
AGAAGAACTGAACGTCTCTTGTCGTGCTCTCGGTAAAGCTGACCATGAGG
GCTGGATGTTCAAGAAAGCCGGTGGACATGGTATTGTTCCAGTAAGCTGG
AAGAAATTTTGGGTGGTTATCAAATTAGGGAAAATATATTGCTACAAAAC
GTCATTCAACATGCAAGCAGATTATTTGTTTATGGTCACTGACTACAGTG
TGGATAATGCTacagagaaaaagaaaaatttCGCTTTCGTATTGAAACCA
AACGAAGAAGACAAGAAAGGAGTGATTTTCGCTTGTGAGACAGAACAAGA
ATGTAATGATTGGATGGGAACTATCAACAAAATATTGTCCGGTGTCCATC
TCAACAATGAAGAAGATGAAGAAACGACAGGATTACCTGCAGGATTCGGT
ACTCGCACATCCTCAATGTCACAACCGCGCGTACGAAAAATGAGCGCTGG
AACGGGTGCACCAAGCTCTGTTCTATCTGTGGGTTCAATGTTTCACAAAT
TAGAAGAAAAACCGAAGGAAGACcaagatgaagaagatgatgAAGATGTC
GAAttaaaagatttattatacaaagAAGTCGAAGTCGAAACTGAAGCGCC
CGCAAAAACACCTTCACCCAAACCCGCTCCCATTCGTGTGGTGGAGCCTG
TCGCTAAGCAAGTCATTCAAACAAAAGAACGCGAAAACGAGAAAACCGCC
TCCATTGATGCTGAAACTATCAttaaagaaatggaagaaaaaacgaaaga
aaatgAGGAGCCGACCCCAGAGCCGGCACTAGCTGGTGCTCCCGTCTCTG
TAGAGCCAGAACCAGTTAAAAAACCAGAGCCAGTTGTTCTTCCCGTCTCT
GTAGAGCCAGAACCAGTTGAAAAACCAGAGCCAGTTGAAGAGTCAAAAGC
GCCAGTTGCGGAGCCAGAAGCATCAAGTGACGAGACAGAAGAAGCAATTG
AAGTCGC

Run BLAST on NCBI

transcript from alignment at sc0000010:414932..423916-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001472 ID=TCONS_00001472|Name=TCONS_00001472|organism=Clytia hemisphaerica|type=transcript|length=8985bp|location=Sequence derived from alignment at sc0000010:414932..423916- (Clytia hemisphaerica)
AACGTATTGTCAAAAAACCTACACGATAGAGCTTATATAATCAAAATTAA
ACCCTTATGAAAAACGCAGTCGACCTTTATTTTAATCATAACAGAAGTCA
TTTTTTGGTTCGATATAGAGAATCACGGGAAAAAGAAACACGTTAAAGTT
AAAAGTTTTTTTGAGAGAGAATACGCTTTTGATTCGGTTTTTTTGAGATT
TGAGAATTTCGTCAGATCATGGATTGGATTTCAAGGTTTAGTTCCAATTC
AAAGAGAAGATTGAGAAGAAGTGTTTCAACGTTCAGTATCTTTGGCGGAG
GAGGTAAGTTGTTCACCATAGGGGCCATGGCTCCACATTGAAAGTGATAG
TGCAGCAATATACTGACTAAGGAGGCTCCGCCGTGGTAAGGGTCCTAAAA
CGCATAAAACAGATTTGTTTTAAGGTTACTAAATAGAATTTGGCTTGATT
AGTAAATTTTCTGTTTGCTTTGAAAACGTGGTCGGGCAAATTCCCCCCAC
CAGGCTGCGTTAAAGAAATTGATTTATAAAAAGAATAACAGGCTTCAAGA
GGTTTCAAGAGGAAAATTTCGATATCCTTTAGATGAAAAGAATTGTGTTT
AGGTTAATTGATTTAATTCTTATGTTCTTATGAATAGATACCAGAATTCT
TTAAATTTCGATTTTGGGTTGCTTTTATAATTACTTACACGGAAACCAAA
ACTCTCCGTCATGAGTTTTGAACGCTATCAGTTCCTCCACTCTAAAGTGT
CTACATAATTGTTTTGGGTAGATAGAAAAGATAGCTACAGTAATGTATTT
TCATGAGATGGGTAAACTTTTTAAAAAAGGTATTTAAACTATGTGTCACT
TATAATATTGCGGTAATACGGTAGAAATCTGAGATGTGAAATTCTATTGA
AATGTGTTTTTAAACGGGTATTATTTCAATGAAATCAATAAAGTTATTGC
CCAATTTTTTTGACAAGATTTGTGAGTATTGATTTTCGTTCTGCTGTTTG
TGGAGTACTAACTATGTCATCACTGAAAAAGTTAAAGGGATTTAGAGAGA
TTTTTGGAGAGTATTTGCAAAATGACTTTCAAGTGGTCAGTTGTGAAAAG
TTTCTTCTAATTCACAACGAAAACGATTTTAAGGAGTTTTCACTCTCACG
TCCAAGAAAGTTTGAGTAAAATACTTGATTTTTATAATATAATTTTTTTT
TGGGTTAAAACCTTTTAAAATATTATCGTGAGAGATTTTAAACACTACAA
CTAAAGACACACCCCTTTTTGTGAATAAGCTTTAAAATCCAATGCTAGAC
TAACATGTTCAAGGGGTAAGATTGACTGTGTTAGAGGTCACATTTTGTCA
CGCTATCACTGACACTCTTACATTTCTTTTCCTGTAACTCTTTTCTGGTC
AGCCCAATGAAAGGTTCTTTATTTGTCTGATGAGGTGATATTAAAAGGAG
AGTCTACTTTAGACCATGTTCACACGTTACTGTTCCGTTTCGCTCTGGTA
TGATTTTCGTTACGGATCGAGAGTGTTCATATTGGTTTCAGAACGTTTTG
TAGAACGAAAACGGAGCAGTTTCATTCAGATGAAAAAAGTGGAGTGAAAC
CATTTCGATCTGTTTTGCTTTGTAACGTCTTTTTTTTGACGTTTCGAATT
TTGACGTTCACACTTGTTTCGGAACCGTTTTGTTTCGGAACGGAATGGAA
CCGTAACGTCTGAACATGACATTAATGTCCTTAATTTAGTTACTTAATTG
TTTTTTATTCGAATAGTCTTTTACAAATCAACCTGTCCGACTCTTGGTTC
TCCCAACCTGGCCTGGTATATGGAGTAACAAACGGTTTGTTCGATTAGAT
TGTTTATAATTGATTATTTAGATATCTATTAGCTAAAAAAGCTAATTTGC
TTTTAGACTGGTAGCTAGTACCAGTCTCCAAAGGATTGTGANGTTAGATC
GCAAGCTATTGATAAAAAAGCTAATTTGCTTTTAGACTGGTAGCTAGTAC
CAGTCTCCAAAGGATTGTGATATTGTATGTTGGTGTTTGATGCAGGCTAA
ACGTTTTTTTTTTATAAGAATAACTTCTATAAGAATATCAGGGTGTGATT
TCAGAGTTAGAACAATAGGTCTATTGTTTAGAACAATAGAAATATAAGAA
TAATGCACACCCTCAGCCAAAGTACACTATTCTTATAAAAGAAAAACGTG
TATGTGTATTTGTTTTTTTCTTTCCCATTATTGGTCACTAATTAAACTGA
AGCCATTTACAATTAAGTTATATCTAGCGTAATAGCATGCAACAAGCTGC
TATTTAGATACAATATGGCAATTTTTGTTGATATTGGTTTATTTTTACTT
TGTAAGGTTATTCTATTTGTTTCGTTCTGATATAAACTTTCGGTTGTATT
GTGGTTTATCTGGAGGCATATTGGATAAACTACGGTATTATTAGCAGAGT
AATGCTTGCAGGTGGGCAGTTGGAGCGAAGCTAATTCACTCCTGGAGAAA
AAGCCACCGTTCCCCACTCTATGAAAAGCATGAATTAAGTTATCACGAAG
ACATAATCACAGAAGTTTTTGTTGACTAAGAATTCGCATTTGAATGGCTT
GGGTCTCTGATATCAATGATTATTATAGTTAACCCGGGGGGTTAATTTAC
TAATTTTCAAGATGTTTATCTGACAGGGTCAAATTTTGGTTGCGATGTTT
ATCTGGCAGTGTCCATTTTTTCAAACTCCAGCGGCACGTCCTCGTCGGCC
GGTAAGGTTAGTGCCCCCCACCCCAGGAGTTAACTAATTCGAATTCGAAA
CGGGTAGCCCATTCTGTTCGGATAACAGAGAGATTCAAATAATAGAAAGT
GTTTTACTAAGAATTAGTTCGAATTATAGAAAGATTCGAATAATAGATGT
TCGAATTAGCGAGTTTCAACTGTATGTAGACTATCCACAACAAACTTATC
AAAAAACTAATGATTTTTTCATTCACGTGTGATGACTTTCAGTTTTTGGT
TGATTGGTGCCAATTGAATGATATTAGATTGTTGGCAATCTCCCTCTAAG
CTTTTATCAAGCTTATTTGCACTATTTAAAGAGCTTATAGCTACAATATG
GAAGATCTTTCAATCGAAAAGAATTCCTTATTTGGTCATGACTGCTCTCC
TCGATTGAGTTTTTGTTGACTTTTGTTTTAAACGGTGGTTAATATTTGCA
TTCTGTTCTTTGAATTCGTCAAACTTTTTTACGTGCAAACATGAAGATAA
TTTTATCATTATTGAAGGCGATATTTTTGTTAGTGCTGGAATCGGAAATG
AAAATTGTATTGCTGGTTGCGTGTCTGAGTAGATGTTTTGGCAATTGAAC
TTTTGGTACCTATCTGTACAGCGTATTCTCGATAACTTCTGATCCTGCAA
CGATGTTCAAAGTCCTAATAACTAGAAATTGACTTTTCGTTGGGGAACAC
AATTTCCGGACAAAGTTATAATCATCATCTTAAAACTTACCTATGTTATT
CTCATTTGCATTAATAGAGATGTATAGAAAATCAATAGTTAAGTAAGAAG
CTACAACGGGCTACAGTATTCAGGGGTCTTTTATAGGCCAAATTTCGCCG
ATCGAAGCCACTAAAAAATTACAATTCGCCTGTCTAAAAGTNGACTTTCG
CCGATCAAAGCCACTAAAAAATTACAATTCGCCACTCGAAAAGTTCGATT
CACCGTCTCAAGTACTTATTCACGCTAATCAATACATTGGGGTTGCTAAG
AATTTGGGGGCCCAGAATCTAGAATTCACCGAGGGAGATTTTTCATTTGC
CAGCCTATCGAAAACAAAGCAAAACCCCCGATGAAAAGTGCTGTCAAGTA
GAGAAACTGGTAAAACACACGTTTTTTATAAGAACAAACTATATAAGAAC
ATAAGTCTTCGAAGGCCAAAATGTTAGTTAAGAACATTTTAAGGCTTTGT
GGACACTAAAACACCCAGTTTCTTAGGAAAATGAACAAAAATACTCTGGT
AAAAAATAAGAACACGTTAAGACCATTTTTAGGCTTAAAACTCAAAAAGT
TAAGATTATTCGAAGCCTTCAAAAAATTTAGATGTTCTTATGAAATAAAC
ATGTAAGCGAAATCAAACTTACGAGCTTTACTCTAAGTGAAATAGGGTTT
TGAATTATTAGTAGAACGTCTATGGTTGTAAGAACGGGCAACAACGGGCT
ATTAAAGGGAATTTAGGACGCTATGAAGAGCTGGGAAAATGGCCTTTTTT
AACAACTTTGTACCATTTTCTTTTCAGAAATAAAAGAGATCGAAGTGACA
GGTGAACGACCTGATGAATCAAATACTGATATGAAGAAACAGAAGAAATT
ACAACGAAGAAAATCCATTGATAAAGAAGAACTGAACGTCTCTTGTCGTG
CTCTCGGTAAAGCTGACCATGAGGGCTGGATGTTCAAGAAAGGTAGATTG
ATAGCTTTTTGTTATTAGAATGGTGTTTTCCACTCATGGATATTCTTTAA
CTTTTTGGGGAAAATCATTCTGAAATATTCTTACAGCATTCTTAGGGCCA
GAATCCAAACCCAGCCTAAATTTAACATGTAATGCTAAAATTTGACATTT
TTGGGAAACAATTGAGCATTGCTGGGAAATAATTGTTAGTTTAAGGTGAA
ATGCTCAAAAATTGGCATTCTTAGGTTCAGTTCCCAAATTCCGAGATGCT
AAAAGAAAAAGCGTGTACCTATCAACCCGTATTGAATTCTGACCTATTTA
GTAAACTGCAAGGCAATTCTTACTACTTTGATGCCAAACTGAAAAAATAC
TGACAAAAAATACACTATCGTGACGAGTTAAAGAGGTTATCTACCGATCT
CCTTTCTTTATATTTTCCATTTCACTCTCTACTTCTAGTTACCCGTGGGA
TTTTGAATGTTTTAATGTTTTTCTCCTTACAGAGTTAAGGCTAATTCATA
TAGGTGGTTTTAGACTATGTCGAACTTATCAGGGGAAGAGATTTGTAATT
GTAATTTCATTGTCTTTTAACGAGCGTTGCACTCCTTCGCATGCTTCCGA
CGTACTTGCTCTGTCGTCTTTGCTGGCTCTTTGTTGGTTTTCATCAATAT
AATTTGCTGTTTTCTTTTTAGCCGGTGGACATGGTATTGTTCCAGTAAGC
TGGAAGAAATTTTGGGTGGTTATCAAATTAGGGAAAATATATTGCTACAA
AACGTCATTCAACATGCAAGCAGATTATTTGTTTATGGTCACTGACTACA
GTGTGGATAATGCTACAGAGAAAAAGAAAAATTTGTAAGTATATCTTAAA
ACCATTATTTTGATATGGGCTTTAAAACGCTATATTTTCAAAGCCTTAAA
CTTCAAACTTTTTAGTTTGAAAGCTATTTTCTCCCTCCTCGGTATATCTA
ATATATCACATGAAATTGTACTCGACATGGAAGCAAAACTTGTTTTAGAC
CTTCTCTGACAGCTAAAGGGTAGCATACTAGGAAGTTCTTGAGTACAAAA
GGCAGGGATCACATTAAGGCCCTCCAAACGAAGAATTTCGCCGTTCCAAG
GCACAAACAAAATTACAATTCACCGGTCTTAAAATTTGTTTCATCGCCTC
AAGTACATATTCACGCTAATCAATACACTAAGCTTGCTAAGAATTTGCCG
TCCTAGAATTCGCCGGAGCTAATTTTTCATTCGCCAGCCTATCAAAAATA
ATGCAAAACGTGCCGTTTCATTTCAAAACGTACCATTTTATTTTCGTAGC
GCTTTCGTATTGAAACCAAACGAAGAAGACAAGAAAGGAGTGATTTTCGC
TTGTGAGACAGAACAAGAATGTAATGATTGGATGGGAACTATCAACAAAA
TATTGTCCGGTGTCCATCTCAACAATGAAGAAGGTTAGTACCATTGAGTT
TAAAGACCCGAAGAGGCTAGAGATGAATCTTTAACCTTGCTCAAGTAAGT
AAAAAAAGTGAAGCGTTAAGATTTGCGCCACATTAAGAATGATGGTTTAC
ATATAACACTTTCTTTGTTTTCAAGTGGCATATTTTTCGAATTCTGGCGA
TATGTTTTACTTTCAATCTAGCGTTTGTAGGAAAACTACGCGGGTCACGC
GCTAAGAATGGGAAATAAGTGACTTTATTTCCCATCCAGGAGTCTCGTAT
TTAGTCCTTCCGTCTTGGAAGTCAATGGTTAGTACGCATGCATGTTCAAA
CAAGAAGTTTATCTTTTTGTCATGAACCTAAACCTAAAGTCCATTTGCTT
AAACTTTTCTTCTTTCACTATTATGTGGAAACCACTCTTAAAAGAATTAG
TCTAATTGAGCTGACATGGTTTCCACATGAAAGATAACATAGTTTACACT
TAGTTACAGCGAATATAGACACAGCGTCAGCTTAAGTTTGAGTAGATTTT
TGTCATCAACTTTTGCCTCTCATGCCAAAAATTAATTGGGCTTATTAGCT
TGATCATGATTCGCGTGCAGCCCTTCCTTAGTTTTATATATAGTTTAATA
TCACTTCATTGATTTACCAAATACCAATCGACCCCAGAGTTTAAATAATA
ATTCATATCTTGCCCAAGTTTATATGCATCAAACCAATTCAAATCTAACG
ATAATCAACTCTCTTCTTTTTCCATACGCCGCTCCTTATCACCTACCCTT
CAACCAATCAATAACAATCATTACGTCATTATTACATCATTATTCATTAA
TAAAATCAACAACCAATCAGATCATTCGGAAGTGCGAGATTATGAAGACC
ACAAGCGATTGAACGCCATCAAACCAACATTTAAAGAAGAACACCAAAAT
AATGGTGTTCGAAAACATCGACCTATTTCTATCGCTTTCCAATCTCAAGA
AGGTAAGGTTTTGCTAAACTGGAGCCCAGTCCTTTAGTTCGATTTTTTAT
GATTCTGCTTAATTTTATTGCTTTCCAATCTCATTAAAGTAAGGTTTTAC
CAAACTCGAACCCAGTTCCCCAGTTCTCTTTCTCATGATTCTGGTAGCGC
TCACAAAAGGTTACGTTCATCAATCAAATCAAAAAGTGGTACAAGTGTTC
TTGGGTGAGAGATTTAGGTTTAGTATATCCAACAAATTGCCATATCCATT
TTTGAGTTACCACTCGTCACTTTTAATTTCAAAACTTCGAAAATATTCTT
TAATTTGACTTTCGGATGACAAGACGCTTTTTCGAATTAGAGATTCGAAT
TACGGAAAGCATTTTTGTAAGACCTTACAAGCCTCATCATTTATGTTCGA
ATTACAAAAATCTGAGTTGTAAAGGCTTCGATGAGAGAGTGAACTGACTT
GAAGTGATCCATTTTTGATACGATCTAGAAGAGAGGGAAATAATATGGGC
TAAACACTCGAATTTTCTCCAGTCAACCATTTTTAAAGAACAAATAATCT
TACACGAATATACTTTTTCTGTAATGACTATCTTGTATGTAGAAACACTA
TTCGCATGACTATAGCATTACTTTAGCTAACATAACAAGCACAGTAACAT
GTACATCTTATAACACCAGTAAAACTGTCTTAGCCTTGAAATATATGGTT
GAACAAATCTTGCACGAATGCTAGGTTTTATTGACACTTAATTTCTATTA
TGTTAGTTATGTAAACTTCCCGTACTTGAATCTGTATAATTTAGACCTCT
CTTATTTCTAATCTTTTGAACTTTTGTTGTCTGATCTGTAGGTCCTCGTT
TCAAATAATTGATTGCAAATTTTTGAATAGTTTTACTGATTTGATTTAGA
ATTTCACCAAAGAAATAAAAAACATCACCAAATGGATTACGTGTTTAAAG
ATTTCAACACTTTTCCACCTCTTTTCTTAGATGAAGAAACGACAGGATTA
CCTGCAGGATTCGGTACTCGCACATCCTCAATGTCACAACCGCGCGTACG
AAAAATGAGCGCTGGAACGGGTGCACCAAGCTCTGTTCTATCTGGTAAGA
CTACATGCTTTGATTTGAAGTTTTCTAAAGTCGTTAGGGGTGCTTGAGGT
TATGGATATGACACCCCCTTCTCACAGACCAACTGGGCTTCCTTCCCATC
GGAAAAATTGTCCAAAATATAGTCCCCGGTAGAAAATTGTCCTCCAAGTT
TTGTCCCTACTGAAAATAATCAAATAAAACAATTCTCATTGCAAAATATT
ATGTTATTTTCCCCATCCCCACTGAATTATCTGAGTTGAAAACAAAAGAA
TTGAAATCCCCGGCCATAAATAATATGGGAATATCAATCACCATCCAGTT
TCAGTCCGTTATTTTTATCCCACTGCTTGAAAACATTTCACCGGGTCTGT
GAGAAGGGAAAATCTCTTCTTTTTTATCTATATTAGTTAGCTCAAACATA
TTACAAACATTAAAGGTTCTTTTAGAAATGCGATCTGTAAAAGGTTTATC
TTTTAACCTGTTCGTTTATGATCGTTGAAACTCATGCACAAATATTGATG
TTGTTGACAGAGTCTTGTATGACAATAAACTTAACTATTCACTTTCTTAT
TATCCAGTGGGTTCAATGTTTCACAAATTAGAAGAAAAACCGAAGGAAGA
CCAAGATGAAGAAGATGATGAAGATGTCGAATTAAAAGATTTATTATACA
AAGAAGTCGAAGTCGAAACTGAAGCGCCCGCAAAAACACCTTCACCCAAA
CCCGCTCCCATTCGTGTGGTGGAGCCTGTCGCTAAGCAAGTCATTCAAAC
AAAAGAACGCGAAAACGAGAAAACCGCCTCCATTGATGCTGAAACTATCA
TTAAAGAAATGGAAGAAAAAACGAAAGAAAATGAGGAGCCGACCCCAGAG
CCGGCACTAGCTGGTGCTCCCGTCTCTGTAGAGCCAGAACCAGTTAAAAA
ACCAGAGCCAGTTGTTCTTCCCGTCTCTGTAGAGCCAGAACCAGTTGAAA
AACCAGAGCCAGTTGAAGAGTCAAAAGCGCCAGTTGCGGAGCCAGAAGCA
TCAAGTGACGAGACAGAAGAAGCAATTGAAGTCGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000752	XLOC_000752	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000010	supercontig	sc0000010:414932..423916 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.267213	0	0	0	0	0	0	0	0	0	0.00101571	0.0194086	0	0	0	2.01417e-08	1.64162	0.0762299	0	0	2.25573e-06	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00001472 vs. Swiss-Prot (Human)

BLAST of TCONS_00001472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00001472 (transcript) - C. hemisphaerica