TCONS_00014326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014326
Unique NameTCONS_00014326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014326 ID=TCONS_00014326|Name=TCONS_00014326|organism=Clytia hemisphaerica|type=transcript|length=377bp
GATcaggataaaataaaattatttgatgctgacaaaaacatgaaaaggaT
CACAACAAATAATATATCAAagaaaaatattcgaaaaaagacAAAGCAAG
CCAACTCCAACACTGACAAGCACAACACAGAAACAAAGGAAAAGGTGCTT
CTGAAGAAAGCCTTCacacaatggaaaattgttgcTTTTGGAAGTCAAGT
GCCATCAGATTCTagGAAACATTACGaacaaagattgaaagaaaagtaTC
TGAAGAAATGGCTTGGATGTCTTTCAGAGAAGAAACAACTTTGGAAGTTA
GAGATTAGAGCTGAATATCATGACAGccTTGTTTCGGTTTTGGTTTTATt
atgatggtgttataatgctCACTGTAG
Run BLAST on NCBI

transcript from alignment at sc0000185:306209..308221-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014326 ID=TCONS_00014326|Name=TCONS_00014326|organism=Clytia hemisphaerica|type=transcript|length=2013bp|location=Sequence derived from alignment at sc0000185:306209..308221- (Clytia hemisphaerica)
GATCAGGATAAAATAAAATTATTTGATGCTGACAAAAACATGAAAAGGAT
CACAACAAATAATATATCAAAGAAAAATATTCGAAAAAAGACAAAGCAAG
CCAACTCCAACACTGACAAGCACAACACAGAAACAAAGGAAAAGTAAGTA
TTTGAATCTTTTGCTGAAATATTGCTGTAATATTAATTATATACTTTTTG
TTTCATAAATTAGGTCTCGAATGAGTTAAGGTCTTTGTTGATTGTTTGGA
TTTTTAAGAACAATTAAAGACTCAAACATAGTGTGAAGCTTGCCAATTTT
TTTTGTTGCCAATATAATAATGTTTGTTAAAAGGGGAAATGAGGTCTGGA
AATCATCACTAAACTGATAATGAAAATATGAAAGAGCTTATTAAGACTAT
TCCAAAAATATATGGTTTATAGGGGTTTACTCTAAGCTTCTATACCGAAT
ATTAACAGCTGTTTGAAAATTCTTTGTAGTTTCTATGGTTACAAAAAAAG
TGACGTAGTGAACGCGAGTAGGTGTCTTATTACATATAGTAAAAAAGAGA
GAAATAAACAGCGTAGTGTTTCAGTTTTTTATCTCACATTGAGAAGAAAA
AAAAGTTTGTAAAAAATGTCTACAACTAGTAGTTTATCTTTGTCAACAGA
TAGTAGCTCAGACCAGTCCTTTGACGATTGTATTGACTCAAGTGAAACTC
AGAAAAATCAGAAAAACTCGGAAAATTCAAGTATGATATGATAATTATAA
TACATTCCCTTCGCTTTCACTATGTCACGAAATAGAGGGGGTGTAGGGGG
TGTTGTAGAGCCGAAAATGAGCAAACTTTAAAGCTTCATAATTAGATAAA
CAAAACAGATTTTTGAATCACTCATTTTTTGTTTGATTGGATTTTTTATG
CTCTATAATTTTAGGCAAAATAATCAATTCCCCTTTAAAAGAATTTATAT
GTAAAAGTTATTATTTGAAACATTCAGGGTGCTTCTGAAGAAAGCCTTCA
CACAATGGAAAATTGTTGCTTTTGGAAGTCAAGTGCCATCAGATTCTAGG
TATATATTTTTTCTTATTTTGTAAGAAATTATAGAATTCATTTTTACAGA
TCATTTTTCATGCCTTTTAAGCATCCGGTTATCGGTTATACCATCTTGAG
TTACAAAAGATGATAAAAACAGCCTTTCTTACGAATAAACAGCAGAAAAG
TGCCTTTTTTGGTCTCTATCGGGCGCTGCCCTGCCTTTCTAGAATTTGGC
CTGTTTACCTAATTTTCTTGTTCAAGTTTTATCTCAGATTGTGACGAGTC
AATTACTGACATTGTTTTGAAGTTTTTATTTTATTTAGTTCCATTAATTT
TAATCTCCTTTAGATTCTCCCAATGTTTCTAAAGATTGAAATTTAGAATA
ATCATGGTAGATGGAACTGGATGGAAAGAACCTCAAAATGTGAGCTTGTG
GTGGGAGCTTAGAATAATAACTATGTACCGGATGTAGATCGATTAGGATA
TTAATAACCAGTAATAACTTATGCTATTGTAGTATATATTATCTCATCTC
AGGAAACATTACGAACAAAGATTGAAAGAAAAGTATCTGAAGAAATGGCT
TGGATGTCTTTCAGAGAAGAAACAACTTTGGAAGTTAGAGATTAGAGCTG
AATATCATGACAGGTAGCTTTTCTTTTATATTAATTTGCATTAAGTATGT
GCTTTCAGAGAGAAAATGTATGTTGCATTGTTGGAACTTTTATGGATATC
TCAAGAAAGTGTGAAAAATCAAAATTAGCATGGTGGACTGATAAATATTT
TTAATACTCGTATACAACTGAATAGTGCTGATAATACTAACGCCTCTACG
GATCCTAACCAAAAGTTGAAATGGTTCTTTGATAATGTTGCTCACGTTGA
TTTTTTGTATCGCATTAATACTGAAACTGAAATCAATCAGGGGTTAAATT
TTCATTTTTTAGCCTTGTTTCGGTTTTGGTTTTATTATGATGGTGTTATA
ATGCTCACTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008008XLOC_008008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014326-exon-sc0000185-1575043694:308079..308221TCONS_00014326-exon-sc0000185-1575043694:308079..308221Clytia hemisphaericaexon
TCONS_00014326-exon-sc0000185-1575043694:307173..307244TCONS_00014326-exon-sc0000185-1575043694:307173..307244Clytia hemisphaericaexon
TCONS_00014326-exon-sc0000185-1575043694:306559..306669TCONS_00014326-exon-sc0000185-1575043694:306559..306669Clytia hemisphaericaexon
TCONS_00014326-exon-sc0000185-1575043694:306209..306259TCONS_00014326-exon-sc0000185-1575043694:306209..306259Clytia hemisphaericaexon
TCONS_00014326-exon-sc0000185-1510915933:308079..308221TCONS_00014326-exon-sc0000185-1510915933:308079..308221Clytia hemisphaericaexon
TCONS_00014326-exon-sc0000185-1510915933:307173..307244TCONS_00014326-exon-sc0000185-1510915933:307173..307244Clytia hemisphaericaexon
TCONS_00014326-exon-sc0000185-1510915933:306559..306669TCONS_00014326-exon-sc0000185-1510915933:306559..306669Clytia hemisphaericaexon
TCONS_00014326-exon-sc0000185-1510915933:306209..306259TCONS_00014326-exon-sc0000185-1510915933:306209..306259Clytia hemisphaericaexon
TCONS_00014326-exon-sc0000185-1491911889:308079..308221TCONS_00014326-exon-sc0000185-1491911889:308079..308221Clytia hemisphaericaexon
TCONS_00014326-exon-sc0000185-1491911889:307173..307244TCONS_00014326-exon-sc0000185-1491911889:307173..307244Clytia hemisphaericaexon
TCONS_00014326-exon-sc0000185-1491911889:306559..306669TCONS_00014326-exon-sc0000185-1491911889:306559..306669Clytia hemisphaericaexon
TCONS_00014326-exon-sc0000185-1491911889:306209..306259TCONS_00014326-exon-sc0000185-1491911889:306209..306259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:306209..308221 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.83837	5.45482	4.17442	4.28516	1.2636	0.212581	1.89381	0	2.60898	1.30654	0	2.01907	2.2214	2.4851	1.60617	2.90677	2.36594	2.17644	2.61866e-06	1.66793	3.90128	3.22964	2.23931	2.30626	1.24506	0	0.633237	0	1.49799	1.02216
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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