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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000317 ID=TCONS_00000317|Name=TCONS_00000317|organism=Clytia hemisphaerica|type=transcript|length=895bp
GTGGTTTTTGGGCGTGGAGTGGAAAAAGCGAACTCGTCTTGTCCTCGACT
GTTCCCGTTAGTTGATGTAAATTCAGGATGAAATTCGATATTCTCAAACT
TCTTGTTAAAGTCAAGGCTATTATCTATGTCTTCCGATTCTATTGACTTC
TCTGTATCGTCCGACGTTGACTTAATTCTATCTTTCCTGTCCCTCAGCAT
GTTCTTTAAAGCAATTGAATCTAGTTCATCATCATCCTCCTCATTGCTAC
GGAAACCTGCTTTGTGATTGGTCATTTCAATGGGCTCAAATAAATCGTCA
TTGTCACCAGTCCTCTCTGGTAGCTGCCCTAAGTCGCTCTTATTCTCTTT
GTCTGGTGTTAGGGCAGCAGAGTCGACAGCCGTTTCCGGCATTTTGTGGT
GATGTCTCGATAGAGGGGCTTCTGTCGTGGATTGGTCCTCAGTGTCTAGT
TTCCCAAAAGCTGTTTCAAGATTCGAATCAAAATGTGTCGTCAACCTTCT
ACTCGGCTTGAAGCCAAGGTCCGGTAATAACATTTGTCGGAGTGTATATC
TTGGTTTAGTTGTCGGTCGGAACAAATCATAATCGGGAGTCGTGGGCACA
CTTTCTAAAACACCAGCATTGTCGCCGTTCAAAGTTTTCTTTAGTGAGTG
TGTCACTTCAACTTCTGTTTCGTCATCGTTAGCCTCGTTCCTATCCTCCA
TATTTCCAAGCTTCGAGGCTAGATTTGAGGCTAAATTCTTAGGTGTTGTG
TTTAGTTCGTGTAACGGTATAGGAGTTGGGTATGTCACAGTATCGTGAAA
TTGCCGCTGTGTAGTACTGATGTGGTTTTTCCTAAGTGCGCTATCGACCA
TTTTTTGTATTCTCTGATCtaaattttctttcgtttccTTTTGAA Run BLAST on NCBI protein sequence of TCONS_00000317-protein >TCONS_00000317-protein ID=TCONS_00000317-protein|Name=TCONS_00000317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
QKETKENLDQRIQKMVDSALRKNHISTTQRQFHDTVTYPTPIPLHELNTT
PKNLASNLASKLGNMEDRNEANDDETEVEVTHSLKKTLNGDNAGVLESVP
TTPDYDLFRPTTKPRYTLRQMLLPDLGFKPSRRLTTHFDSNLETAFGKLD
TEDQSTTEAPLSRHHHKMPETAVDSAALTPDKENKSDLGQLPERTGDNDD
LFEPIEMTNHKAGFRSNEEDDDELDSIALKNMLRDRKDRIKSTSDDTEKS
IESEDIDNSLDFNKKFENIEFHPEFTSTNGNSRGQDEFAFSTPRPKT Run BLAST on NCBI transcript from alignment at sc0000001:1054013..1054907 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000317 ID=TCONS_00000317|Name=TCONS_00000317|organism=Clytia hemisphaerica|type=transcript|length=895bp|location=Sequence derived from alignment at sc0000001:1054013..1054907 (Clytia hemisphaerica)
TTCAAAAggaaacgaaagaaaatttaGATCAGAGAATACAAAAAATGGTC
GATAGCGCACTTAGGAAAAACCACATCAGTACTACACAGCGGCAATTTCA
CGATACTGTGACATACCCAACTCCTATACCGTTACACGAACTAAACACAA
CACCTAAGAATTTAGCCTCAAATCTAGCCTCGAAGCTTGGAAATATGGAG
GATAGGAACGAGGCTAACGATGACGAAACAGAAGTTGAAGTGACACACTC
ACTAAAGAAAACTTTGAACGGCGACAATGCTGGTGTTTTAGAAAGTGTGC
CCACGACTCCCGATTATGATTTGTTCCGACCGACAACTAAACCAAGATAT
ACACTCCGACAAATGTTATTACCGGACCTTGGCTTCAAGCCGAGTAGAAG
GTTGACGACACATTTTGATTCGAATCTTGAAACAGCTTTTGGGAAACTAG
ACACTGAGGACCAATCCACGACAGAAGCCCCTCTATCGAGACATCACCAC
AAAATGCCGGAAACGGCTGTCGACTCTGCTGCCCTAACACCAGACAAAGA
GAATAAGAGCGACTTAGGGCAGCTACCAGAGAGGACTGGTGACAATGACG
ATTTATTTGAGCCCATTGAAATGACCAATCACAAAGCAGGTTTCCGTAGC
AATGAGGAGGATGATGATGAACTAGATTCAATTGCTTTAAAGAACATGCT
GAGGGACAGGAAAGATAGAATTAAGTCAACGTCGGACGATACAGAGAAGT
CAATAGAATCGGAAGACATAGATAATAGCCTTGACTTTAACAAGAAGTTT
GAGAATATCGAATTTCATCCTGAATTTACATCAACTAACGGGAACAGTCG
AGGACAAGACGAGTTCGCTTTTTCCACTCCACGCCCAAAAACCAC Coding sequence (CDS) from alignment at sc0000001:1054013..1054907 >TCONS_00000317 ID=TCONS_00000317|Name=TCONS_00000317|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at sc0000001:1054013..1054907 (Clytia hemisphaerica)
CAAAAggaaacgaaagaaaatttaGATCAGAGAATACAAAAAATGGTCGA
TAGCGCACTTAGGAAAAACCACATCAGTACTACACAGCGGCAATTTCACG
ATACTGTGACATACCCAACTCCTATACCGTTACACGAACTAAACACAACA
CCTAAGAATTTAGCCTCAAATCTAGCCTCGAAGCTTGGAAATATGGAGGA
TAGGAACGAGGCTAACGATGACGAAACAGAAGTTGAAGTGACACACTCAC
TAAAGAAAACTTTGAACGGCGACAATGCTGGTGTTTTAGAAAGTGTGCCC
ACGACTCCCGATTATGATTTGTTCCGACCGACAACTAAACCAAGATATAC
ACTCCGACAAATGTTATTACCGGACCTTGGCTTCAAGCCGAGTAGAAGGT
TGACGACACATTTTGATTCGAATCTTGAAACAGCTTTTGGGAAACTAGAC
ACTGAGGACCAATCCACGACAGAAGCCCCTCTATCGAGACATCACCACAA
AATGCCGGAAACGGCTGTCGACTCTGCTGCCCTAACACCAGACAAAGAGA
ATAAGAGCGACTTAGGGCAGCTACCAGAGAGGACTGGTGACAATGACGAT
TTATTTGAGCCCATTGAAATGACCAATCACAAAGCAGGTTTCCGTAGCAA
TGAGGAGGATGATGATGAACTAGATTCAATTGCTTTAAAGAACATGCTGA
GGGACAGGAAAGATAGAATTAAGTCAACGTCGGACGATACAGAGAAGTCA
ATAGAATCGGAAGACATAGATAATAGCCTTGACTTTAACAAGAAGTTTGA
GAATATCGAATTTCATCCTGAATTTACATCAACTAACGGGAACAGTCGAG
GACAAGACGAGTTCGCTTTTTCCACTCCACGCCCAAAAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000317-exon-sc0000001-1491911889:1054013..1054907 | TCONS_00000317-exon-sc0000001-1491911889:1054013..1054907 | Clytia hemisphaerica | exon |
| TCONS_00000317-exon-sc0000001-1510915933:1054013..1054907 | TCONS_00000317-exon-sc0000001-1510915933:1054013..1054907 | Clytia hemisphaerica | exon |
| TCONS_00000317-exon-sc0000001-1575043694:1054013..1054907 | TCONS_00000317-exon-sc0000001-1575043694:1054013..1054907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1054013..1054907 . |
Blast
The following BLAST results are available for this feature:
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