TCONS_00013998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013998
Unique NameTCONS_00013998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013998 ID=TCONS_00013998|Name=TCONS_00013998|organism=Clytia hemisphaerica|type=transcript|length=1807bp
tagcaaactaaaataaaacataTCAATCATTTTCGAATcgtataaaattc
aaaatggcggattcaatatgctgcgtgattGCCGATAAAAAGAATGTCAA
AAAAATCAAACAAGAATTGGAAAAGAGGAACATTCTACACTCCAAATATC
GTATCACGAAAATGGACCCTAACACCTGTGCTATACCTGTCTCTACTGAC
AAGTGTTCTGTTGAAAATAATCTGCAGACTGATCTCTTGCCATCTTTCAA
GGAACAACAGGCGGTTCAATATTTGAACGCTGATGAATTGCTCTGTAGTA
AGGTTATAACGCCTCGCGATGCCCTCGTTCAAAAATTGGAAGGTTTTTTT
AAGACAAAAACTGAGATTTGTGAAAATGAGAGGAATCGAATATTACAGCA
AGTTCCACATAAATGGGAAATCCATGGAGATATGTTATTATTACCAAGGG
ATTGTTTAACAAATGCATTCTGGGAAACTGGGCAGAAAGAATTATGGGAA
ATATTTGCTAAAGTCTTGAAAGTGAAACGTGTGGCTGTTATGTCTCGCGT
TCAGGATAATATGATTCGAACGCCAAAAGTCGCCCTTAAGCTAGGGGCGG
ACGGATGGGTCAAACACGTGGATAATGAGATAATTTATTcgtatgacgtc
acaaaatgtATGTTTTCAAAAGGCAACATTACGGAGAAAATGAGGATCGC
GCGGCTTGATTGTCGAGAAGAAATTGTCGTTGATCTATTTGCAGGTATTG
GCTACTTCACTCTTCCATATTTGGTCAAAGCACAAGCCAAGAAATTATAC
GCGTGTGAAATCAACCCTGACGCATGCGCAGCTCTTAAAAAGAATCTGGG
TTTGAATCACGTGGACGAAAGTCGGTACCAGATCCTTCAAGGTGATAATA
GAGAGGTATGTCCAAAGAACATTGCAGATCGTGTTAACCTTGGTCTTATC
CCAAGCTCTTCACTCTCATGGGCGACCGCCTGTCACGCCCTTAATCAAGC
GAAGGGCGGGTGGCTACATATTCATGAGAATGTCGATAGTGGTGCAAACG
CTCTGGATAGTGGTACAGGTAGTGATGCTATTCTTCAAGATCATATTACG
AATGCAGGAGAATTTGAGATATGTCAACATGTTGTGAAAACAGAATTTGT
GCCGTGTCGCGATGGACTTGACGTAACGGATTCGGAACCTCCTGAAGATA
TAGAGTTGGAAACGTCGACATTGTCTGAGAAGAATAAAGCAGGACCCTTA
GATACAGAAGTTGTCAACAAAGAAAGGGATTTATCGATAACGTATGAAAA
ATCTAAAGGTATGAGCGTAGATAATTATGTGTTTCCTGAATGCAACGACT
TGGAAAGGGAAAATCGAAACTTAGTACGAGATTGCTACAAAGGAAAGCTC
TCAAAGCATAAGTGTGTGGTATGGCAGGCATTTGTCGATGACATGTTGTC
GAAATTGAAATCCTAtttgccgccattatggaaagtaacattacgtcata
taGAGTTTGTAAAATCTTATGCGCCCCATGTTGATCATttagtttttgat
attgaatgtCGACCAATCAGTGATCAGCTATTGTGAGCGTAAAGACCACG
TGGTTTTAtctgttGTAAAATTTCACTTCGGAGCAAAACGGTATCATATT
GTGTTCTGTTGTAGTTTTATTAATTGGGCccttccattttatatccatac
agggaggggtggacgaacatttaaATGGGGGTTAAAAATGTATTCTAATA
ATTTCATGGGGTAAAAGACCGGTTTTAGTCTAATTTAAGGTCTAATTTaa
ttttcca
Run BLAST on NCBI

protein sequence of TCONS_00013998-protein

>TCONS_00013998-protein ID=TCONS_00013998-protein|Name=TCONS_00013998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
MADSICCVIADKKNVKKIKQELEKRNILHSKYRITKMDPNTCAIPVSTDK
CSVENNLQTDLLPSFKEQQAVQYLNADELLCSKVITPRDALVQKLEGFFK
TKTEICENERNRILQQVPHKWEIHGDMLLLPRDCLTNAFWETGQKELWEI
FAKVLKVKRVAVMSRVQDNMIRTPKVALKLGADGWVKHVDNEIIYSYDVT
KCMFSKGNITEKMRIARLDCREEIVVDLFAGIGYFTLPYLVKAQAKKLYA
CEINPDACAALKKNLGLNHVDESRYQILQGDNREVCPKNIADRVNLGLIP
SSSLSWATACHALNQAKGGWLHIHENVDSGANALDSGTGSDAILQDHITN
AGEFEICQHVVKTEFVPCRDGLDVTDSEPPEDIELETSTLSEKNKAGPLD
TEVVNKERDLSITYEKSKGMSVDNYVFPECNDLERENRNLVRDCYKGKLS
KHKCVVWQAFVDDMLSKLKSYLPPLWKVTLRHIEFVKSYAPHVDHLVFDI
ECRPISDQLL
Run BLAST on NCBI

transcript from alignment at sc0000175:402976..408675-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013998 ID=TCONS_00013998|Name=TCONS_00013998|organism=Clytia hemisphaerica|type=transcript|length=5700bp|location=Sequence derived from alignment at sc0000175:402976..408675- (Clytia hemisphaerica)
TAGCAAACTAAAATAAAACATATCAATCATTTTCGAATCGTATAAAATTC
AAAATGGCGGATTCAATATGCTGCGTGATTGCCGATAAAAAGAATGTCAA
AAAAATCAAGTAAGTCACTTTATAACTATAGTTATCATAGTTATCCAGTC
TCGGCTGAAATGTTTAACGTATTGTCTTTTCAGTTTTCAGTTTCAGTTTT
AATTATCTGTTTCCGAACTCTGTAAGAATTTGGTTCAGTGGTTCTCAAGT
CACAAGCTTTTGAAGTCAAAATTCACCTTTGAAAAAGTCCAAAAACACGT
CAAAAAAGGGGTATCAAATTCAGCATTTCTTAACATTCTTCACTAAAAAC
TTTTTTGAAAATTCGTTCAGAATTACTATTTTCCTGTTTTTCACCATAAC
TTTTGTTAGGATGATTAAGAAAATGAGCTTAAAAATAGTGAAATTATGAG
GTTTTCTGCATAGAATTGCGTTAATTTGACACCCCATTTTTGACGTATTT
TTGGACTTTTTCAACAGTAAATTTTGACTTCTAAAGCTTATAACTTGAGA
GCCACTGGACCAAATTTAAAATGTTATATACCAAATTTTAATTTTCAAAA
GAATTACAATGACAAAGGAATTCATTAAAAGTTCACATTACTTCGGACAA
AGTTAGCCATCAAACCTTTTATACTTTTTTCTGGGTCACCCGGTAGTTTG
AAAATGAGGTAAGCGTTGCTCGTGACGTAATTTATGATAAAGGTCTTTTG
TTATCATGAGACGAATGATTTTTTTTTTCTTTTCATTCTAGACAAGAATT
GGAAAAGAGGAACATTCTACACTCCAAATATCGTATCACGAAAATGGACC
CTAACACCTGTGCTATACCTGTCTCTACTGACAAGTGTTCTGTTGAAAAT
AATCTGCAGACTGATCTCTTGCCATCTTTCAAGGAACAACAGGCGGTTCA
ATATTTGAACGCTGATGAATTGCTCTGTAGTAAGGTTATAACGCCTCGCG
ATGCCCTCGTTCAAAAATTGGAAGGTTTTTTTAAGACAAAAACTGAGATT
TGTGAAAATGAGAGGAATCGAATATTACAGCAAGTTCCACATAAATGGGA
AATCCATGGAGATATGTTATTATTACCAAGGGATTGTTTAACAAATGCAT
TCTGGGAAACTGGGCAGAAAGAATTATGGGAAATATTTGCTAAAGTCTTG
AAAGTGAAACGTGTGGCTGTTATGTCTCGCGTTCAGGATAATATGATTCG
AACGCCAAAAGTCGCCCTTAAGCTAGGGGCGGACGGATGGGTCAAACACG
TGGATAATGAGATAATTTATTCGTATGACGTCACAAAATGTATGTTTTCA
AAAGGCAACATTACGGAGAAAATGAGGATCGCGCGGCTTGATTGTCGAGA
AGAAATTGTCGTTGATCTATTTGCAGGTAAGATGTCATTCATACTTTCGG
AGGCCTCGTATGATAAAGATAGACCAATTAAAACTCAAAATGTTAACCAT
CATTAATTTTCTTTATTTCAACGAGGTTAACTTCTTTAGGGTAACGGACC
CCCGTTTGTTAATTTTTCGACTATTAGGATAAGACCTAGCGAGTACCTCA
CTAAAAACCGGGATTTTTCATCTCGTTTCTTGGTGAGTTCCACTTTGACG
ATTTTCTAAAAATAGAAGCCTTTCAAGTGCTTTGACGCAAATTCGATTTT
TTCGCTCTGCAGGAGCTTCGAAATTTAAAAGTGACGTCAAGAAATCGAAT
GTTTAGAGCCCGAAAACCCGGGCTCAAAACATTCGAAAAAGTTGCAAAGT
GGAATAGACGCGGGTGGCGTCTAGTATAGGCTAGATAAGACCTTATTAGG
AACCCCCGTTTCTTATTCTTCGAAAATATTTGCAGCTGTCCAAAGAAGAT
TCCCTTACTTTGCTCTAAAAAGCCAGGTTTTAATCTATATTTACCTTTTT
TTTTGGGGGGGGGGTGTATTTATAGGTACGATTCAAACCCCCTGCTAATT
GAGTCTCCCATTATTAAAACTTGAAGAGAAGAGAAGATATTTCCAACCGT
AGGTAGTAAAACAAATGTGGATCAGGTAGATAAAGATACTCAGGAAACTC
ACTTTTACCTTCTTTACTATGCAGTGTGTATTATAAAGTATAATCCTCAA
AACTCATCTTAACTGGGCTTAGAAGTCGGGGGCTTCCGAGGGTACAAAAT
ACCAGAATACCGGTAATTTTCTCGTCCTCTACCGAAATACCAGTAAATGT
TTCTGTAAATACCGGTACTGGCAGGTATCTTAAATACCGGAATACCGGTA
ATTGTTCTGGCCAATACCGGAAGAAAATAGGCCCAATACCGGTAAATACC
GGGTTCTCGGAAGCCTCTTTCCCCTTAGAATAATTGAAATAATAATTTCG
CATACATTTATAAGGATTTTACTTTAATGAAAATATTTGTCCAATTTACC
TTTTTTTTGGGGGGGGGGTGTATTTATAGGTACGATTCAAACCCCCTGCT
AATTGAGTCTCCCATTATTAAAACTTGAAGAGAAGATTTTTCCAACCGCA
TACCTCCGTTCATCAGGCACCTGAGTGTAGGTAGTAAAACAAATGTGAGG
ACAAATGAAGATACTCAGGAAACTGACTTATACCTTCTTTACTATAATGT
TCGTTCTCTCTAATTCGATCTTCAAGGGATCAAAATTTTTCTTTTTATTA
GAAAAAGATTGGAAATATGGAGAGTATTTTATACAACTCTTCAACTGAAA
GGAGCGAGATTTTAGTTCGAATTACAGAAAGATTTGAATAATAGATGTTC
GAATTAAGGAGAGCTGACTATGTATTACCGTGATTTTTTTCTTCGTTTTC
CTCACTTTAGGTATTGGCTACTTCACTCTTCCATATTTGGTCAAAGCACA
AGCCAAGAAATTATACGCGTGTGAAATCAACCCTGACGCATGCGCAGCTC
TTAAAAAGAATCTGGGTTTGAATCACGTGGACGAAAGTCGGTACCAGATC
CTTCAAGGTGATAATAGAGAGGTCAGTAACGTTCTTTTTTGGAACTACCT
CGGAGGTCCTTTAAATTAACCGATGTTAGTCCGTTCGTTCGTCTGTTATT
AGTTTTTCTCGGGATCGGCTCGTTAGTTTTTTCTGATTTTTTTGCACAGT
GATACAAAATGGTGATTCCCAAAAAAGTGACGGAGCCCGATTTTCGAAAA
AAAGAATATGCCGGAAATATGCCGGTAAAACCGGTTTTTTGGCATTGTCT
CGAGATTTCATCGTGATTTTTTGCACAAAGATGCATATTAGCAATGTCCA
ACTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTTAAA
GAAAAAAATTAGCAAGTTTACATACATCATTTCTTTGGATAAGAAGGTCT
ATCAGTTACCATAAGCGGATTAATTTTTGCGAATTTTGAAAATGTTCCCT
AAAATTTAATTAGTCATCGTGAAAAATTTTAGATACGAATTTCGACCCTT
AGGAAAATGGAAAATTTGGTGAAAAATAGTCCGATTTGCGAATTTTTGTC
CACGTCAAAAATTTAGATTCTCAATTTCGCGAAAAAAGGTAATGTGAAAA
TTAATCCAGTTAAAGTACTCTGAAATTACAATAGCAAGTTTCTACATCTA
CGTTATGACGTTCATGACGGAGCTTTGACTCAAACGAATTTAGAGCAATC
CGTTCTTTTAGCGTCATCTTTAGTTATCTAAACCTTCCAGACGCAAAAAT
TTTCATCCGACACGCTAAAGCTCTGAAGGTTGAGAAAATCCTCAACATCT
GGAAGGTTTAGATTACGGAATTTTGCAGCGGGAGGCCTGTTAACCCAGCC
CTGGTTTTCGCGGATGGTAGGTCCAACTGAAATATTTTCAGGTTTACACG
CGAGGGCTGTTGAACCCGGCTGAAGATGCGGCATATCAAAGGCCGACTAT
CATTTCCTCTCCGATGGGAAGTTGACACCTATCCTTTAGAGCTTTAGCGT
GGGCGGCCGCCAATCCGCCATCAGAATATCAGATAACATTTTTAGCCTAC
ATGGCTTACGCATAGATAAAGGAAGCGAAAATACATTTGATATTTTAAAA
GGGCGCTCTTCTATTCGATACGCTCCCTTTGGTGAAAAATCCAATTTCCC
TTAAAAATCGAATGGGAGAGTGCCAACTGTAGTTCTTTTCGTGATTGGTC
TTGCTTTTAAATTTTCCAAAATTATACCAATAGACCTTTTCATAGATTAC
GTCACGAACATCACTTGCCTCGTATTCAAACAAATACCATGGTGATTATG
TCTCTTGAGACATTAAATAATTTTTTTATGATTAGGAAGTAGTTTTAATA
AAATCCGCTGGGAGTTAATCACCGTGGCATTAATTTCAAAACGAGGCAAG
TGATGTTCGTAACGTAGTTTATGAAAAGGTCTACATGTTTTTTCTTTTAT
AAGCATAACGTTTATAAGCATATGCAGGCTCAGTTTTTGGTACCTAAACA
ATGGCTCTATTGTTTGAGAACAATAGAATGCTAAGCATAATGCCAGCCTG
GAATTGGGACAGATACTTGCTTATAAAAAAAACATGTATTAACCTAATTC
TGATTGCGTCTTGCTAAATCTTCCAACACCAAAACTTTCCCTTTTAAATC
AAGCTCAGCCAAAACTTTACAAAAGATGTATTTTCTTATTCTAGGTATGT
CCAAAGAACATTGCAGATCGTGTTAACCTTGGTCTTATCCCAAGCTCTTC
ACTCTCATGGGCGACCGCCTGTCACGCCCTTAATCAAGCGAAGGGCGGGT
GGCTACATATTCATGAGAATGTCGATAGTGGTGCAAACGCTCTGGATAGT
GGTACAGGTAGTGATGCTATTCTTCAAGATCATATTACGAATGCAGGAGA
ATTTGAGATATGTCAACATGTTGTGAAAACAGAATTTGTGCCGTGTCGCG
ATGGACTTGACGTAACGGATTCGGAACCTCCTGAAGATATAGAGTTGGAA
ACGTCGACATTGTCTGAGAAGAATAAAGCAGGACCCTTAGATACAGAAGT
TGTCAACAAAGAAAGGGATTTATCGATAACGTATGAAAAATCTAAAGGTA
TGAGCGTAGATAATTATGTGTTTCCTGAATGCAACGACTTGGAAAGGGAA
AATCGAAACTTAGTACGAGATTGCTACAAAGGAAAGCTCTCAAAGCATAA
GTGTGTGGTATGGCAGGCATTTGTCGATGACATGTTGTCGAAATTGAAAT
CCTATTTGCCGCCATTATGGAAAGTAACATTACGTCATATAGAGTTTGTA
AAATCTTATGCGCCCCATGTTGATCATTTAGTTTTTGATATTGAATGTCG
ACCAATCAGTGATCAGCTATTGTGAGCGTAAAGACCACGTGGTTTTATCT
GTTGTTTTTATTTTGCAGATGGAGTACAGAATGTTGAACGATTAGTGATT
AATACCCATATTAAAATTCTTTGATCTAAATCGATCTTCTGCCCGAGCAG
TCCCTAGGTAAAATTTCACTTCGGAGCAAAACGGTATCATATTGTGTTCT
GTTGTAGTTTTATTAATTGGGCCCTTCCATTTTATATCCATACAGGGAGG
GGTGGACGAACATTTAAATGGGGGTTAAAAATGTATTCTAATAATTTCAT
GGGGTAAAAGACCGGTTTTAGTCTAATTTAAGGTCTAATTTAATTTTCCA

Coding sequence (CDS) from alignment at sc0000175:402976..408675-

>TCONS_00013998 ID=TCONS_00013998|Name=TCONS_00013998|organism=Clytia hemisphaerica|type=CDS|length=6132bp|location=Sequence derived from alignment at sc0000175:402976..408675- (Clytia hemisphaerica)
GTATGTCCAAAGAACATTGCAGATCGTGTTAACCTTGGTCTTATCCCAAG
CTCTTCACTCTCATGGGCGACCGCCTGTCACGCCCTTAATCAAGCGAAGG
GCGGGTGGCTACATATTCATGAGAATGTCGATAGTGGTGCAAACGCTCTG
GATAGTGGTACAGGTAGTGATGCTATTCTTCAAGATCATATTACGAATGC
AGGAGAATTTGAGATATGTCAACATGTTGTGAAAACAGAATTTGTGCCGT
GTCGCGATGGACTTGACGTAACGGATTCGGAACCTCCTGAAGATATAGAG
TTGGAAACGTCGACATTGTCTGAGAAGAATAAAGCAGGACCCTTAGATAC
AGAAGTTGTCAACAAAGAAAGGGATTTATCGATAACGTATGAAAAATCTA
AAGGTATGAGCGTAGATAATTATGTGTTTCCTGAATGCAACGACTTGGAA
AGGGAAAATCGAAACTTAGTACGAGATTGCTACAAAGGAAAGCTCTCAAA
GCATAAGTGTGTGGTATGGCAGGCATTTGTCGATGACATGTTGTCGAAAT
TGAAATCCTATTTGCCGCCATTATGGAAAGTAACATTACGTCATATAGAG
TTTGTAAAATCTTATGCGCCCCATGTTGATCATTTAGTTTTTGATATTGA
ATGTCGACCAATCAGTGATCAGCTATTGTGAGTATTGGCTACTTCACTCT
TCCATATTTGGTCAAAGCACAAGCCAAGAAATTATACGCGTGTGAAATCA
ACCCTGACGCATGCGCAGCTCTTAAAAAGAATCTGGGTTTGAATCACGTG
GACGAAAGTCGGTACCAGATCCTTCAAGGTGATAATAGAGAGACAAGAAT
TGGAAAAGAGGAACATTCTACACTCCAAATATCGTATCACGAAAATGGAC
CCTAACACCTGTGCTATACCTGTCTCTACTGACAAGTGTTCTGTTGAAAA
TAATCTGCAGACTGATCTCTTGCCATCTTTCAAGGAACAACAGGCGGTTC
AATATTTGAACGCTGATGAATTGCTCTGTAGTAAGGTTATAACGCCTCGC
GATGCCCTCGTTCAAAAATTGGAAGGTTTTTTTAAGACAAAAACTGAGAT
TTGTGAAAATGAGAGGAATCGAATATTACAGCAAGTTCCACATAAATGGG
AAATCCATGGAGATATGTTATTATTACCAAGGGATTGTTTAACAAATGCA
TTCTGGGAAACTGGGCAGAAAGAATTATGGGAAATATTTGCTAAAGTCTT
GAAAGTGAAACGTGTGGCTGTTATGTCTCGCGTTCAGGATAATATGATTC
GAACGCCAAAAGTCGCCCTTAAGCTAGGGGCGGACGGATGGGTCAAACAC
GTGGATAATGAGATAATTTATTCGTATGACGTCACAAAATGTATGTTTTC
AAAAGGCAACATTACGGAGAAAATGAGGATCGCGCGGCTTGATTGTCGAG
AAGAAATTGTCGTTGATCTATTTGCAGATGGCGGATTCAATATGCTGCGT
GATTGCCGATAAAAAGAATGTCAAAAAAATCAAGTATGTCCAAAGAACAT
TGCAGATCGTGTTAACCTTGGTCTTATCCCAAGCTCTTCACTCTCATGGG
CGACCGCCTGTCACGCCCTTAATCAAGCGAAGGGCGGGTGGCTACATATT
CATGAGAATGTCGATAGTGGTGCAAACGCTCTGGATAGTGGTACAGGTAG
TGATGCTATTCTTCAAGATCATATTACGAATGCAGGAGAATTTGAGATAT
GTCAACATGTTGTGAAAACAGAATTTGTGCCGTGTCGCGATGGACTTGAC
GTAACGGATTCGGAACCTCCTGAAGATATAGAGTTGGAAACGTCGACATT
GTCTGAGAAGAATAAAGCAGGACCCTTAGATACAGAAGTTGTCAACAAAG
AAAGGGATTTATCGATAACGTATGAAAAATCTAAAGGTATGAGCGTAGAT
AATTATGTGTTTCCTGAATGCAACGACTTGGAAAGGGAAAATCGAAACTT
AGTACGAGATTGCTACAAAGGAAAGCTCTCAAAGCATAAGTGTGTGGTAT
GGCAGGCATTTGTCGATGACATGTTGTCGAAATTGAAATCCTATTTGCCG
CCATTATGGAAAGTAACATTACGTCATATAGAGTTTGTAAAATCTTATGC
GCCCCATGTTGATCATTTAGTTTTTGATATTGAATGTCGACCAATCAGTG
ATCAGCTATTGTGAGTATTGGCTACTTCACTCTTCCATATTTGGTCAAAG
CACAAGCCAAGAAATTATACGCGTGTGAAATCAACCCTGACGCATGCGCA
GCTCTTAAAAAGAATCTGGGTTTGAATCACGTGGACGAAAGTCGGTACCA
GATCCTTCAAGGTGATAATAGAGAGACAAGAATTGGAAAAGAGGAACATT
CTACACTCCAAATATCGTATCACGAAAATGGACCCTAACACCTGTGCTAT
ACCTGTCTCTACTGACAAGTGTTCTGTTGAAAATAATCTGCAGACTGATC
TCTTGCCATCTTTCAAGGAACAACAGGCGGTTCAATATTTGAACGCTGAT
GAATTGCTCTGTAGTAAGGTTATAACGCCTCGCGATGCCCTCGTTCAAAA
ATTGGAAGGTTTTTTTAAGACAAAAACTGAGATTTGTGAAAATGAGAGGA
ATCGAATATTACAGCAAGTTCCACATAAATGGGAAATCCATGGAGATATG
TTATTATTACCAAGGGATTGTTTAACAAATGCATTCTGGGAAACTGGGCA
GAAAGAATTATGGGAAATATTTGCTAAAGTCTTGAAAGTGAAACGTGTGG
CTGTTATGTCTCGCGTTCAGGATAATATGATTCGAACGCCAAAAGTCGCC
CTTAAGCTAGGGGCGGACGGATGGGTCAAACACGTGGATAATGAGATAAT
TTATTCGTATGACGTCACAAAATGTATGTTTTCAAAAGGCAACATTACGG
AGAAAATGAGGATCGCGCGGCTTGATTGTCGAGAAGAAATTGTCGTTGAT
CTATTTGCAGATGGCGGATTCAATATGCTGCGTGATTGCCGATAAAAAGA
ATGTCAAAAAAATCAAGTATGTCCAAAGAACATTGCAGATCGTGTTAACC
TTGGTCTTATCCCAAGCTCTTCACTCTCATGGGCGACCGCCTGTCACGCC
CTTAATCAAGCGAAGGGCGGGTGGCTACATATTCATGAGAATGTCGATAG
TGGTGCAAACGCTCTGGATAGTGGTACAGGTAGTGATGCTATTCTTCAAG
ATCATATTACGAATGCAGGAGAATTTGAGATATGTCAACATGTTGTGAAA
ACAGAATTTGTGCCGTGTCGCGATGGACTTGACGTAACGGATTCGGAACC
TCCTGAAGATATAGAGTTGGAAACGTCGACATTGTCTGAGAAGAATAAAG
CAGGACCCTTAGATACAGAAGTTGTCAACAAAGAAAGGGATTTATCGATA
ACGTATGAAAAATCTAAAGGTATGAGCGTAGATAATTATGTGTTTCCTGA
ATGCAACGACTTGGAAAGGGAAAATCGAAACTTAGTACGAGATTGCTACA
AAGGAAAGCTCTCAAAGCATAAGTGTGTGGTATGGCAGGCATTTGTCGAT
GACATGTTGTCGAAATTGAAATCCTATTTGCCGCCATTATGGAAAGTAAC
ATTACGTCATATAGAGTTTGTAAAATCTTATGCGCCCCATGTTGATCATT
TAGTTTTTGATATTGAATGTCGACCAATCAGTGATCAGCTATTGTGAGTA
TTGGCTACTTCACTCTTCCATATTTGGTCAAAGCACAAGCCAAGAAATTA
TACGCGTGTGAAATCAACCCTGACGCATGCGCAGCTCTTAAAAAGAATCT
GGGTTTGAATCACGTGGACGAAAGTCGGTACCAGATCCTTCAAGGTGATA
ATAGAGAGACAAGAATTGGAAAAGAGGAACATTCTACACTCCAAATATCG
TATCACGAAAATGGACCCTAACACCTGTGCTATACCTGTCTCTACTGACA
AGTGTTCTGTTGAAAATAATCTGCAGACTGATCTCTTGCCATCTTTCAAG
GAACAACAGGCGGTTCAATATTTGAACGCTGATGAATTGCTCTGTAGTAA
GGTTATAACGCCTCGCGATGCCCTCGTTCAAAAATTGGAAGGTTTTTTTA
AGACAAAAACTGAGATTTGTGAAAATGAGAGGAATCGAATATTACAGCAA
GTTCCACATAAATGGGAAATCCATGGAGATATGTTATTATTACCAAGGGA
TTGTTTAACAAATGCATTCTGGGAAACTGGGCAGAAAGAATTATGGGAAA
TATTTGCTAAAGTCTTGAAAGTGAAACGTGTGGCTGTTATGTCTCGCGTT
CAGGATAATATGATTCGAACGCCAAAAGTCGCCCTTAAGCTAGGGGCGGA
CGGATGGGTCAAACACGTGGATAATGAGATAATTTATTCGTATGACGTCA
CAAAATGTATGTTTTCAAAAGGCAACATTACGGAGAAAATGAGGATCGCG
CGGCTTGATTGTCGAGAAGAAATTGTCGTTGATCTATTTGCAGATGGCGG
ATTCAATATGCTGCGTGATTGCCGATAAAAAGAATGTCAAAAAAATCAAG
TATGTCCAAAGAACATTGCAGATCGTGTTAACCTTGGTCTTATCCCAAGC
TCTTCACTCTCATGGGCGACCGCCTGTCACGCCCTTAATCAAGCGAAGGG
CGGGTGGCTACATATTCATGAGAATGTCGATAGTGGTGCAAACGCTCTGG
ATAGTGGTACAGGTAGTGATGCTATTCTTCAAGATCATATTACGAATGCA
GGAGAATTTGAGATATGTCAACATGTTGTGAAAACAGAATTTGTGCCGTG
TCGCGATGGACTTGACGTAACGGATTCGGAACCTCCTGAAGATATAGAGT
TGGAAACGTCGACATTGTCTGAGAAGAATAAAGCAGGACCCTTAGATACA
GAAGTTGTCAACAAAGAAAGGGATTTATCGATAACGTATGAAAAATCTAA
AGGTATGAGCGTAGATAATTATGTGTTTCCTGAATGCAACGACTTGGAAA
GGGAAAATCGAAACTTAGTACGAGATTGCTACAAAGGAAAGCTCTCAAAG
CATAAGTGTGTGGTATGGCAGGCATTTGTCGATGACATGTTGTCGAAATT
GAAATCCTATTTGCCGCCATTATGGAAAGTAACATTACGTCATATAGAGT
TTGTAAAATCTTATGCGCCCCATGTTGATCATTTAGTTTTTGATATTGAA
TGTCGACCAATCAGTGATCAGCTATTGTGAGTATTGGCTACTTCACTCTT
CCATATTTGGTCAAAGCACAAGCCAAGAAATTATACGCGTGTGAAATCAA
CCCTGACGCATGCGCAGCTCTTAAAAAGAATCTGGGTTTGAATCACGTGG
ACGAAAGTCGGTACCAGATCCTTCAAGGTGATAATAGAGAGACAAGAATT
GGAAAAGAGGAACATTCTACACTCCAAATATCGTATCACGAAAATGGACC
CTAACACCTGTGCTATACCTGTCTCTACTGACAAGTGTTCTGTTGAAAAT
AATCTGCAGACTGATCTCTTGCCATCTTTCAAGGAACAACAGGCGGTTCA
ATATTTGAACGCTGATGAATTGCTCTGTAGTAAGGTTATAACGCCTCGCG
ATGCCCTCGTTCAAAAATTGGAAGGTTTTTTTAAGACAAAAACTGAGATT
TGTGAAAATGAGAGGAATCGAATATTACAGCAAGTTCCACATAAATGGGA
AATCCATGGAGATATGTTATTATTACCAAGGGATTGTTTAACAAATGCAT
TCTGGGAAACTGGGCAGAAAGAATTATGGGAAATATTTGCTAAAGTCTTG
AAAGTGAAACGTGTGGCTGTTATGTCTCGCGTTCAGGATAATATGATTCG
AACGCCAAAAGTCGCCCTTAAGCTAGGGGCGGACGGATGGGTCAAACACG
TGGATAATGAGATAATTTATTCGTATGACGTCACAAAATGTATGTTTTCA
AAAGGCAACATTACGGAGAAAATGAGGATCGCGCGGCTTGATTGTCGAGA
AGAAATTGTCGTTGATCTATTTGCAGATGGCGGATTCAATATGCTGCGTG
ATTGCCGATAAAAAGAATGTCAAAAAAATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007821XLOC_007821Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013998-exon-sc0000175-1575043694:408567..408675TCONS_00013998-exon-sc0000175-1575043694:408567..408675Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1575043694:407250..407884TCONS_00013998-exon-sc0000175-1575043694:407250..407884Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1575043694:405655..405815TCONS_00013998-exon-sc0000175-1575043694:405655..405815Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1575043694:403273..403981TCONS_00013998-exon-sc0000175-1575043694:403273..403981Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1575043694:402976..403168TCONS_00013998-exon-sc0000175-1575043694:402976..403168Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1510915933:408567..408675TCONS_00013998-exon-sc0000175-1510915933:408567..408675Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1510915933:407250..407884TCONS_00013998-exon-sc0000175-1510915933:407250..407884Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1510915933:405655..405815TCONS_00013998-exon-sc0000175-1510915933:405655..405815Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1510915933:403273..403981TCONS_00013998-exon-sc0000175-1510915933:403273..403981Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1510915933:402976..403168TCONS_00013998-exon-sc0000175-1510915933:402976..403168Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1491911889:408567..408675TCONS_00013998-exon-sc0000175-1491911889:408567..408675Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1491911889:407250..407884TCONS_00013998-exon-sc0000175-1491911889:407250..407884Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1491911889:405655..405815TCONS_00013998-exon-sc0000175-1491911889:405655..405815Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1491911889:403273..403981TCONS_00013998-exon-sc0000175-1491911889:403273..403981Clytia hemisphaericaexon
TCONS_00013998-exon-sc0000175-1491911889:402976..403168TCONS_00013998-exon-sc0000175-1491911889:402976..403168Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013998-proteinTCONS_00013998-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:402976..408675 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.39774	1.94848	1.10605	0.688607	2.36524	2.10563	2.02658	2.8058	2.13279	2.98135	3.55388	2.08482	1.74232	1.14213	1.42455	1.97522	1.61665	2.08408	0.89682	0.864368	1.245	1.60193	4.86202	4.44343	4.33826	4.82911	0.517522	0.292401	3.03094	3.53995
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR030382MeTrfase_TRM5/TYW2
IPR029063SAM-dependent_MTases
Blast
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BLAST of TCONS_00013998 vs. Swiss-Prot (Human)
Match: TYW2 (tRNA wybutosine-synthesizing protein 2 homolog OS=Homo sapiens GN=TRMT12 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 2.091e-70
Identity = 139/357 (38.94%), Postives = 196/357 (54.90%), Query Frame = 3 
Query:   63 SICCVIADKKNVKKIKQELEKRNILHSKYRITKMDPNTCAIPVSTDKCSVENNLQ-------------TDLLPSFKEQQAVQYLNADELLCSKVITPRDALVQKLEGFFKTKTEICENERNRILQQVPHKWEIHGDMLLLPRDCLTNAFWETGQKELWEIFAKVLKVKRVAVMSRVQDNMIRTPKVALKLGADGWVKHVDNEIIYSYDVTKCMFSKGNITEKMRIARLDCREEIVVDLFAGIGYFTLPYLVKAQAKKLYACEINPDACAALKKNLGLNHVDESRYQILQGDNREVCPKNIADRVNLGLIPSSSLSWATACHALNQAKGGWLHIHENVDSGANALDSGTGSDAILQDH 1094
            ++  V+ +    ++ ++ L+++ +  +++R+ KM   + A+PV  +    E +LQ                LP     +  Q  +  + LC +V        + +EG     +   E +       +P  W+ HG++LLL  DC     W+    ELWE  A  L V+R+A   RV  +  RTP V L LG  GWV+HVDN I Y +DVT+CMFS GNITEK+R+A L C  E++VDL+AGIGYFTLP+LV A A  ++ACE NP A  AL+ NL +N V + R QI  GDNR++   NIADRV LGLIPSS   W  AC  L Q  GG LHIH+NV+S         G   + ++H
Sbjct:   19 AVVAVVTEPWFTQRYREYLQRQKLFDTQHRVEKMPDGSVALPVLGETLP-EQHLQELRNRVAPGSPCMLTQLPDPVPSKRAQGCSPAQKLCLEV-------SRWVEGRGVKWSAELEAD-------LPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVALALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSFGNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLEINGVAD-RCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQALGVSKVEKEH 359
The following BLAST results are available for this feature:
BLAST of TCONS_00013998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYW22.091e-7038.94tRNA wybutosine-synthesizing protein 2 homolog OS=... [more]
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