|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013932 ID=TCONS_00013932|Name=TCONS_00013932|organism=Clytia hemisphaerica|type=transcript|length=1582bp
TAGACCTCAACCGTGTTTATTCAGGCTACCTTCTATATTTATAGTTCTAC
AGGacttccaaataaataaaactcTTCAAAACTCCTACCACTACTGATAA
TACCAttaagattttcaaataaacgcctTCGAGTTGTTTTCGAACATATT
CCCAAAAATgcataaatatttttgatttgacATGGATACATGCTATTggc
tcattttcagaaaaaaattaaaaaatgattgagATGAGGTGGCTTTGCAT
AGATTTTCCATATTGACAACTGAGTATCTCAGCACTATGGGAACTtatga
taacagttctgttaaTATGAGTGATATTGCCAACGACATCACATCAGTAT
TAGTGGAAAATACTTCTAGTATCACTGGAGATTTTGAAGATATTAGTACC
AAAGTACAATTGACAATTTATTATATTGGAATCATAGGAAATATCGTTAT
CATGATTTATTTTGTGTGTGTTAGCCGTAAAAACATATTCAAGATGTCAG
CCTACCATTTTTTACTGGTCCTGTTAGCGTTTGAAGATTTTAACATGTGC
CTGTGGCTATTGTTATCTAAATATCAATACAACTGGTCAATGACTGTATT
GTACTGTCGTTTTGGTTCCGCAATATTGGAGGTCTCATCTTTGGCAGCTA
TATGGGCTTTGGTGTTATTATTTTATGAACGGTATAAAGGAATTGTATAC
CCGTTCAAaagaaaactaaacaaaaagaaatatttcggaTTGACTTTGTT
ATATACAATACTTTCCTGGATGCTGTATATTCCAGAATACTTTGAAGTCA
AAGTCGACAAATTTGAGCGTTGTGTTTTAAAGAAATCTTATACTAAAATT
GAATTTCATTGCCTTTTAATCTATTACCGACTTTTCGATACCATCTTACC
TACCGCTTTAATGTTTTATTTCCAGCGGAAGATTTCAAACTATGTAAAAA
GGATCTCGATGACGATAAGGACGACTGACAACTCACGAAATCACCAAAAC
AGTCGGCAAAATCGGAACAATATTGCATTGAAGACTTTAACACATTTACT
GGgtttttacacctttttaaTCGTTCCATGGAAAATACTGTATAACGTAG
CGTTGTACCTGATCTATTTTGAAGAAGAACTTGTTATCAAACACAATTTG
CAAATCCTACAATCAGCAACTTGTGTTTTCGCCTTAAACAATATCATCAA
TGTTTTCGTATATTTGTATTTGATCAAAGACTTTCGGAAGTTCTTAGTAA
GCATTGTGAACTGTAACCTGTTTTGTCAGAGAAAGCTTGAATCTAATGAA
CGCCGAATACAATGAGCAAAAAACGAGGGCATAGTGCCCGAAGTgtaatt
agagattttttttgaaaacaagaacaaTTTACATAAGAACATGAGActtc
gattgccaaaatgttaagaactagttaagaacatttaaaggatTTGCTGA
CTCAAAAATGGCCAACTTCTttagaaaatggacaaaaaatactctcaaaa
tggtgaaaataatcacacgtttttttataagaacatccaaaattttctaa
ccattttggcgatcgaagccttgtgttcttat Run BLAST on NCBI protein sequence of TCONS_00013932-protein >TCONS_00013932-protein ID=TCONS_00013932-protein|Name=TCONS_00013932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MGTYDNSSVNMSDIANDITSVLVENTSSITGDFEDISTKVQLTIYYIGII
GNIVIMIYFVCVSRKNIFKMSAYHFLLVLLAFEDFNMCLWLLLSKYQYNW
SMTVLYCRFGSAILEVSSLAAIWALVLLFYERYKGIVYPFKRKLNKKKYF
GLTLLYTILSWMLYIPEYFEVKVDKFERCVLKKSYTKIEFHCLLIYYRLF
DTILPTALMFYFQRKISNYVKRISMTIRTTDNSRNHQNSRQNRNNIALKT
LTHLLGFYTFLIVPWKILYNVALYLIYFEEELVIKHNLQILQSATCVFAL
NNIINVFVYLYLIKDFRKFLVSIVNCNLFCQRKLESNERRIQ Run BLAST on NCBI transcript from alignment at sc0000174:217484..219065 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013932 ID=TCONS_00013932|Name=TCONS_00013932|organism=Clytia hemisphaerica|type=transcript|length=1582bp|location=Sequence derived from alignment at sc0000174:217484..219065 (Clytia hemisphaerica)
ataagaacacaaggcttcgatcgccaaaatggttagaaaattttggatgt
tcttataaaaaaacgtgtgattattttcaccattttgagagtattttttg
tccattttctaaAGAAGTTGGCCATTTTTGAGTCAGCAAatcctttaaat
gttcttaactagttcttaacattttggcaatcgaagTCTCATGTTCTTAT
GTAAAttgttcttgttttcaaaaaaaatctctaattacACTTCGGGCACT
ATGCCCTCGTTTTTTGCTCATTGTATTCGGCGTTCATTAGATTCAAGCTT
TCTCTGACAAAACAGGTTACAGTTCACAATGCTTACTAAGAACTTCCGAA
AGTCTTTGATCAAATACAAATATACGAAAACATTGATGATATTGTTTAAG
GCGAAAACACAAGTTGCTGATTGTAGGATTTGCAAATTGTGTTTGATAAC
AAGTTCTTCTTCAAAATAGATCAGGTACAACGCTACGTTATACAGTATTT
TCCATGGAACGAttaaaaaggtgtaaaaacCCAGTAAATGTGTTAAAGTC
TTCAATGCAATATTGTTCCGATTTTGCCGACTGTTTTGGTGATTTCGTGA
GTTGTCAGTCGTCCTTATCGTCATCGAGATCCTTTTTACATAGTTTGAAA
TCTTCCGCTGGAAATAAAACATTAAAGCGGTAGGTAAGATGGTATCGAAA
AGTCGGTAATAGATTAAAAGGCAATGAAATTCAATTTTAGTATAAGATTT
CTTTAAAACACAACGCTCAAATTTGTCGACTTTGACTTCAAAGTATTCTG
GAATATACAGCATCCAGGAAAGTATTGTATATAACAAAGTCAAtccgaaa
tatttctttttgtttagttttcttTTGAACGGGTATACAATTCCTTTATA
CCGTTCATAAAATAATAACACCAAAGCCCATATAGCTGCCAAAGATGAGA
CCTCCAATATTGCGGAACCAAAACGACAGTACAATACAGTCATTGACCAG
TTGTATTGATATTTAGATAACAATAGCCACAGGCACATGTTAAAATCTTC
AAACGCTAACAGGACCAGTAAAAAATGGTAGGCTGACATCTTGAATATGT
TTTTACGGCTAACACACACAAAATAAATCATGATAACGATATTTCCTATG
ATTCCAATATAATAAATTGTCAATTGTACTTTGGTACTAATATCTTCAAA
ATCTCCAGTGATACTAGAAGTATTTTCCACTAATACTGATGTGATGTCGT
TGGCAATATCACTCATAttaacagaactgttatcataAGTTCCCATAGTG
CTGAGATACTCAGTTGTCAATATGGAAAATCTATGCAAAGCCACCTCATc
tcaatcattttttaatttttttctgaaaatgagccAATAGCATGTATCCA
TgtcaaatcaaaaatatttatgcATTTTTGGGAATATGTTCGAAAACAAC
TCGAaggcgtttatttgaaaatcttaaTGGTATTATCAGTAGTGGTAGGA
GTTTTGAAgagttttatttatttggaagtCCTGTAGAACTATAAATATAG
AAGGTAGCCTGAATAAACACGGTTGAGGTCTA Coding sequence (CDS) from alignment at sc0000174:217484..219065 >TCONS_00013932 ID=TCONS_00013932|Name=TCONS_00013932|organism=Clytia hemisphaerica|type=CDS|length=1029bp|location=Sequence derived from alignment at sc0000174:217484..219065 (Clytia hemisphaerica)
TCATTGTATTCGGCGTTCATTAGATTCAAGCTTTCTCTGACAAAACAGGT
TACAGTTCACAATGCTTACTAAGAACTTCCGAAAGTCTTTGATCAAATAC
AAATATACGAAAACATTGATGATATTGTTTAAGGCGAAAACACAAGTTGC
TGATTGTAGGATTTGCAAATTGTGTTTGATAACAAGTTCTTCTTCAAAAT
AGATCAGGTACAACGCTACGTTATACAGTATTTTCCATGGAACGAttaaa
aaggtgtaaaaacCCAGTAAATGTGTTAAAGTCTTCAATGCAATATTGTT
CCGATTTTGCCGACTGTTTTGGTGATTTCGTGAGTTGTCAGTCGTCCTTA
TCGTCATCGAGATCCTTTTTACATAGTTTGAAATCTTCCGCTGGAAATAA
AACATTAAAGCGGTAGGTAAGATGGTATCGAAAAGTCGGTAATAGATTAA
AAGGCAATGAAATTCAATTTTAGTATAAGATTTCTTTAAAACACAACGCT
CAAATTTGTCGACTTTGACTTCAAAGTATTCTGGAATATACAGCATCCAG
GAAAGTATTGTATATAACAAAGTCAAtccgaaatatttctttttgtttag
ttttcttTTGAACGGGTATACAATTCCTTTATACCGTTCATAAAATAATA
ACACCAAAGCCCATATAGCTGCCAAAGATGAGACCTCCAATATTGCGGAA
CCAAAACGACAGTACAATACAGTCATTGACCAGTTGTATTGATATTTAGA
TAACAATAGCCACAGGCACATGTTAAAATCTTCAAACGCTAACAGGACCA
GTAAAAAATGGTAGGCTGACATCTTGAATATGTTTTTACGGCTAACACAC
ACAAAATAAATCATGATAACGATATTTCCTATGATTCCAATATAATAAAT
TGTCAATTGTACTTTGGTACTAATATCTTCAAAATCTCCAGTGATACTAG
AAGTATTTTCCACTAATACTGATGTGATGTCGTTGGCAATATCACTCATA
ttaacagaactgttatcataAGTTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013932-exon-sc0000174-1491911889:217484..219065 | TCONS_00013932-exon-sc0000174-1491911889:217484..219065 | Clytia hemisphaerica | exon |
| TCONS_00013932-exon-sc0000174-1510915933:217484..219065 | TCONS_00013932-exon-sc0000174-1510915933:217484..219065 | Clytia hemisphaerica | exon |
| TCONS_00013932-exon-sc0000174-1575043694:217484..219065 | TCONS_00013932-exon-sc0000174-1575043694:217484..219065 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:217484..219065 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
