TCONS_00013930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013930
Unique NameTCONS_00013930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013930 ID=TCONS_00013930|Name=TCONS_00013930|organism=Clytia hemisphaerica|type=transcript|length=383bp
TATGTAAATGTTCTCTGGCGAAGTGGATTTTGATGCAACTTCTTTTTGGA
ATCTTTATTTcgatgtttgttttttatccacgttgtCCTTGGAAACTGAA
TTTTGAAGCATAAATACATATTGCATGGTATAGATGAAATGGGTACATGC
TGTGATGATAAGTCTACTTGATTTGTCTATATTTTGATTTGGGGGCTTTT
GCCCTGGAGCTACCCCTTAATTTGGGAAGCACGTCAAAACAATNNNNNNN
NNNNNNNNNNNNNNNTTGACAATCACATATTTTCAGTCTGATATTATTTT
TaaactatatttttcaaatttagatttaaatttttttagcatTGAGTCAT
ACACCTTTTGCATTTAGTGTTCATGGAGCAATA
Run BLAST on NCBI

transcript from alignment at sc0000174:212429..212811

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013930 ID=TCONS_00013930|Name=TCONS_00013930|organism=Clytia hemisphaerica|type=transcript|length=383bp|location=Sequence derived from alignment at sc0000174:212429..212811 (Clytia hemisphaerica)
TATTGCTCCATGAACACTAAATGCAAAAGGTGTATGACTCAatgctaaaa
aaatttaaatctaaatttgaaaaatatagtttAAAAATAATATCAGACTG
AAAATATGTGATTGTCAANNNNNNNNNNNNNNNNNNNNNNATTGTTTTGA
CGTGCTTCCCAAATTAAGGGGTAGCTCCAGGGCAAAAGCCCCCAAATCAA
AATATAGACAAATCAAGTAGACTTATCATCACAGCATGTACCCATTTCAT
CTATACCATGCAATATGTATTTATGCTTCAAAATTCAGTTTCCAAGGaca
acgtggataaaaaacaaacatcgAAATAAAGATTCCAAAAAGAAGTTGCA
TCAAAATCCACTTCGCCAGAGAACATTTACATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007784XLOC_007784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013930-exon-sc0000174-1491911889:212429..212811TCONS_00013930-exon-sc0000174-1491911889:212429..212811Clytia hemisphaericaexon
TCONS_00013930-exon-sc0000174-1510915933:212429..212811TCONS_00013930-exon-sc0000174-1510915933:212429..212811Clytia hemisphaericaexon
TCONS_00013930-exon-sc0000174-1575043694:212429..212811TCONS_00013930-exon-sc0000174-1575043694:212429..212811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:212429..212811 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.95258	2.59642	0.563304	1.44894	9.43273	6.19081	6.01206	4.06697	2.19319	4.03725	3.1528	1.36235	3.46444	3.78668	4.87135	4.27848	1.07131	2.5576	1.70629	2.07529	2.35417	0	1.70309	2.58814	1.09457	5.0214	4.81546	1.378	3.69958	3.6084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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