TCONS_00013783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013783
Unique NameTCONS_00013783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013783 ID=TCONS_00013783|Name=TCONS_00013783|organism=Clytia hemisphaerica|type=transcript|length=3234bp
tgccAAACGAAAACTTTTCTCTCAATCAAAATGTcatataaaataattcg
aatcCCCTTTTAAGAATTTCATGTAAAAATACATCTCGAAGCTTTCTCCC
ACACAACAGTTTCgaatttaacaaacttttaaaatcttattaaatcttaa
gaatttgaaactgaacaattaaaaataataattctaGGCATTtgatattc
aaaataaattcttcTTTTAGTTTCTTGTAAAGATAATTAACATTCAGTGC
CACGTCTGGGGCGCTGTTCCGCCGAACCAGATGTGCCTGGTAATTTATCA
TAAATGTTTCCGGTATTACCAGCGGGTTGAGTATCATTGGGTCCACACCC
GTATTTCGTCAAAATAAAGTTAATATTATCATAAAGTGTCTCCGATGATT
TTTGGGActcgttttcaaaatcattAATTGCTGAATCAGTAATTGTATCA
TTATTTTCATTGTCTGTTGTTGTATGGTTTGCCTCTGGTTGTTGATGATG
AATTCGGGGCGTATCGTAGAGTCCTGTAATTTGTGAAATGACCGGCGTTT
CAAAGCCAGGGACCTCATTTACAGGCGTTGCCGCAGGGTCAGTCATTCTA
GGTTTATCGTATACAACTTTATCGTCTCCAAACGACAGTTTCTTGGGAGT
TGTGTTCGTAAACGGCTCTTCCTCAATGTTTAACTGAAGCATTGATTTTC
GAGGTGAACTATACTCGGAAAGGCGTTTATCGCGTGGCGGTCCTTCACCA
TTGAGTACTGAGCTCGGGAGGGCGTATTCGCTCCCGTATTGACTACCACT
ACTCATTTTACTGTAGCCGTTTGAGTCTTCACTTTTGTCTGGTGAGAATT
GACTGGGACGTGATCCCCCGTGGAACGTCTGGCTACGTGGTAAATCGTAG
ATGCTTTTACGTCGATTTTTCTCTAAATCGATAACGTAAGGCATGTCGAA
ATCAGATACGGCACTATCAAGGCTATACGTGTGGGCTAGACTAGCATGCC
CGTTATCATACGTAGCACGGCTATCTAGAGACGTACATTCCGTTTCTGCG
CTGGCTCCCGAGTTACGTTTACGATCTTCTACGTCATCCTCCACGTACTC
GTTTtcgaaaatatcttcaaaaacgGGAACAGAACTGACCCTTGTTGGCG
GCGCGTTAACAGCGGCGAGACTTTCGGATATACGGCGTTGTAACGTATTC
AATGGCATGTATCCTTTCTGTAACGTTTCGTCTGCGTGAGGATTGGTGAA
AGCATCGTAACCACTGAAAGTGTGCGATTTGTGTAGCCCTTGAGACGTGA
CCTGAGCTAACGTTTTCGGTTTTGGGATGATCGTGTCTTTACGGATACGG
CTCTTACGTGGCGTTTTGGCGGACGTGACCGGTTTCGGTTCCGGTTCGTT
GTTCGACATTGGATTCGTAGCTGAGGAACTTGATGGTGTTTTTCGTTTCG
TGTATTTAGCGACTTGATTTTTAGTACCATCTTCTATATCTGAGCCGCAA
CAACAACACGAGCATCCGTTCCAATTCACGCATGCGTAGTAGGTAATAAA
TATGATAACGACAATGACGAAAAGTCCTAACAAACCACTTGTGGTGATGG
cgatatttttataattttcatccTCCTTCTCGGTTGAACCAATAACGTTT
GTGACTTCAACTTTTTTACCGAAATCTGTTACAAAGTTGGTAGACGCATA
ATCACCCTGTCCGAATTTGTTCACGTATCGAATTCGGACATCTGTGATAT
CATTTATTGACAATCCGTCTCCCAACTGGTCTTGACATACCATGAAATTG
TTTGTGtaagttttgaataaaaagaaaggAGCGTTGTTCCTAACCAATTC
AATATCGTAGGAAATAGGTAAACGGCAGTGATTAGGATTTAAGAGTGGTC
CCATCCATTGCGTGTGTAAACAATCCGATTCCGAAACCGTTCGAACGTCT
GTAACCGGTTCGGGTTTAAATGAAACCGTTAAGGCAACTTTCCCTTTAAT
CGGATTCGTTGCATCTCCATGGATTTCGTAGTTGGCGGTAAGATTACAAG
GCTGTCGATACACTCTAGGTGTTGTATAAGAGTATTTATAACAGTGTGTg
ttcaaagaaaatttctttgtaACGTGTTCAGACCTTAATCCGTGTGTAGT
GTTCACTATTACGCCATCTACATTTGTAGTGTTAGTTATTAAGGTCCATT
TTACACTTGGTTTCGGGTTTCCACAAACGACCATTTCGAAGGATGTTGTC
CCAACTTCAGCTACAGTGACGGAATCGGGGAAACTTCGGGATATTAATAA
CGGCCCACCAATAACCTGTAAATCGACATCGGTTCGTTGAGTTGAACCCG
ATCGGCAAGTATAAATTCCCGAATCGGAATAAGTCGTATTTGTTAGGGTT
ATGGAGATAATGTTTGTTTGATAGCTAACGGTTAAGCGATGTTGGTATAT
CTCCATAATATCAGGTTCCAATCTCAATATAGGTGTCCGAGTACCACTGG
TCCAGTTACCCAATTTACGAATTTCCCCATTCGATATAAAGCTACAAATG
ACATTGTCTATTGTTTCAGTCTCGAGTTGGATCGTTAGAACAGCGATTGA
GCCACGACTGACAGATTCTTTTGAACGTTGAATATTAGCGGTGGTGGTGG
TCGTTTGAGTTTGTGTCAAATATACCAATGTCAAAAGTAATACGATTCTc
attaaatatttttccattgtccgagatatttttttacttgtttcttTAAA
ATAGTTGTCTTTGAAATACGATAAGTCAAATTTTGTGAGACATTTGTGAT
ACAGTTGAGTTCTCTTCTCGTCTCGattgattatttcaaaaatattttat
tttcaataattctTTGAGACACAAAAACACGCCTTTTTCAGTATGTAGTA
TCAAAGAGTGTGTGCGTGTCCTATAGTAACACAgcgaaaataaaaagaag
agtcgcttcaaaaaattgacaaaaagtttGGTTGAATCAATAACAACAAC
ATCAAGAACAAGAACAATAGAACGACTAATCAATTTCACTCTCGTTCATC
ATGACAacatcatttttaatgactttgctattcttttttttgttaatGAC
TATACGCAATTACCTGCTCCTCGGCTTTTATTTCTATTGTTCAAAACGTT
TTTTAACTACCGTTTCGTAAATAGGAACTATCTAGTTATTGTTTCAATAT
CAGAAAAGTCATTAACGAGAAAATTATTGAGATA
Run BLAST on NCBI

transcript from alignment at sc0000173:396395..400486+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013783 ID=TCONS_00013783|Name=TCONS_00013783|organism=Clytia hemisphaerica|type=transcript|length=4092bp|location=Sequence derived from alignment at sc0000173:396395..400486+ (Clytia hemisphaerica)
tgccAAACGAAAACTTTTCTCTCAATCAAAATGTcatataaaataattcg
aatcCCCTTTTAAGAATTTCATGTAAAAATACATCTCGAAGCTTTCTCCC
ACACAACAGTTTCgaatttaacaaacttttaaaatcttattaaatcttaa
gaatttgaaactgaacaattaaaaataataattctaGGCATTtgatattc
aaaataaattcttcTTTTAGTTTCTTGTAAAGATAATTAACATTCAGTGC
CACGTCTGGGGCGCTGTTCCGCCGAACCAGATGTGCCTGGTAATTTATCA
TAAATGTTTCCGGTATTACCAGCGGGTTGAGTATCATTGGGTCCACACCC
GTATTTCGTCAAAATAAAGTTAATATTATCATAAAGTGTCTCCGATGATT
TTTGGGActcgttttcaaaatcattAATTGCTGAATCAGTAATTGTATCA
TTATTTTCATTGTCTGTTGTTGTATGGTTTGCCTCTGGTTGTTGATGATG
AATTCGGGGCGTATCGTAGAGTCCTGTAATTTGTGAAATGACCGGCGTTT
CAAAGCCAGGGACCTCATTTACAGGCGTTGCCGCAGGGTCAGTCATTCTA
GGTTTATCGTATACAACTTTATCGTCTCCAAACGACAGTTTCTTGGGAGT
TGTGTTCGTAAACGGCTCTTCCTCAATGTTTAACTGAAGCATTGATTTTC
GAGGTGAACTATACTCGGAAAGGCGTTTATCGCGTGGCGGTCCTTCACCA
TTGAGTACTGAGCTCGGGAGGGCGTATTCGCTCCCGTATTGACTACCACT
ACTCATTTTACTGTAGCCGTTTGAGTCTTCACTTTTGTCTGGTGAGAATT
GACTGGGACGTGATCCCCCGTGGAACGTCTGGCTACGTGGTAAATCGTAG
ATGCTTTTACGTCGATTTTTCTCTAAATCGATAACGTAAGGCATGTCGAA
ATCAGATACGGCACTATCAAGGCTATACGTGTGGGCTAGACTAGCATGCC
CGTTATCATACGTAGCACGGCTATCTAGAGACGTACATTCCGTTTCTGCG
CTGGCTCCCGAGTTACGTTTACGATCTTCTACGTCATCCTCCACGTACTC
GTTTtcgaaaatatcttcaaaaacgGGAACAGAACTGACCCTTGTTGGCG
GCGCGTTAACAGCGGCGAGACTTTCGGATATACGGCGTTGTAACGTATTC
AATGGCATGTATCCTTTCTGTAACGTTTCGTCTGCGTGAGGATTGGTGAA
AGCATCGTAACCACTGAAAGTGTGCGATTTGTGTAGCCCTTGAGACGTGA
CCTGAGCTAACGTTTTCGGTTTTGGGATGATCGTGTCTTTACGGATACGG
CTCTTACGTGGCGTTTTGGCGGACGTGACCGGTTTCGGTTCCGGTTCGTT
GTTCGACATTGGATTCGTAGCTGAGGAACTTGATGGTGTTTTTCGTTTCG
TGTATTTAGCGACTTGATTTTTAGTACCATCTTCTATATCTGAGCCGCAA
CAACAACACGAGCATCCGTTCCAATTCACGCATGCGTAGTAGGTAATAAA
TATGATAATNCTATACTCGGAAAGGCGTTTATCGCGTGGCGGTCCTTCAC
CATTGAGTACTGAGCTCGGGAGGGCGTATTCGCTCCCGTATTGACTACCA
CTACCCATTTTACTGTAGCCGTTTGAGTCTTCACTTTTGTCTGGTGAGAA
TTGACTGGGACGTGATCCCCCGTGGAACGTCTGGCTACGTGGTAAGTCGT
AGATGCTTTTACGTCGATTTTTCTCTAAATCGATAACGTAAGGCATGTCG
AAATCAGATACGGCGCTATCAAGGCTATACGTGTGGGCTAGACTAGCATG
CCCGTTATCATACGTAGCACGGCTATCAAGGGACGTACATTCTGTTTCTG
CGCTGGCTCCCGAGTTACGTTTACGGTCTTCTACGTCATCCTCCACGTAC
TCGTTTtcgaaaatatcttcaaatacaGGAACAGAACTGACCCTTGTTGG
GGGCGCGTTAACGGCGGCGAGACTTTCGGATATCCGGCGTTGTAACGTAT
TCAATGGCATGTAACCTTTCTGTAACGTTTCGTCTGCGTGAGTATTGGTG
AAAGCATCGTAACCACTGAACGTATGCGATTTGTGTAGCCCTTGAGACGT
GACCTGGGCTAACGTTTTCGGTTTTGGGATGATCGTGTCTTTACGGATAC
GGCTCTTACGTTGCGTTTTGGCGGACGTGACTGGTTTCGGTTCCGGTTCG
TTGTTCGACATTGGATTCGTAGCTGAGGAACTTGATGGTATTTTTCGTTT
CGTCACCGTGTATTTAGCGACTTGATTTTTAGTACCATCTTCTATATCTG
AGCCGCAACAACAACACGAACAGCCGTTCCAATTCACGCATGCGTAGTAG
GTAATAAATATGATAACGACAATGACGAAAAGTCCTAACAAACCACTTGT
GGTGATGGcgatatttttataattttcatccTCCTTCTCGGTTGAACCAA
TAACGTTTGTGACTTCAACTTTTTTACCGAAATCTGTTACAAAGTTGGTA
GACGCATAATCACCCTGTCCGAATTTGTTCACGTATCGAATTCGGACATC
TGTGATATCATTTATTGACAATCCGTCTCCCAACTGGTCTTGACATACCA
TGAAATTGTTTGTGtaagttttgaataaaaagaaaggAGCGTTGTTCCTA
ACCAATTCAATATCGTAGGAAATAGGTAAACGGCAGTGATTAGGATTTAA
GAGTGGTCCCATCCATTGCGTGTGTAAACAATCCGATTCCGAAACCGTTC
GAACGTCTGTAACCGGTTCGGGTTTAAATGAAACCGTTAAGGCAACTTTC
CCTTTAATCGGATTCGTTGCATCTCCATGGATTTCGTAGTTGGCGGTAAG
ATTACAAGGCTGTCGATACACTCTAGGTGTTGTATAAGAGTATTTATAAC
AGTGTGTgttcaaagaaaatttctttgtaACGTGTTCAGACCTTAATCCG
TGTGTAGTGTTCACTATTACGCCATCTACATTTGTAGTGTTAGTTATTAA
GGTCCATTTTACACTTGGTTTCGGGTTTCCACAAACGACCATTTCGAAGG
ATGTTGTCCCAACTTCAGCTACAGTGACGGAATCGGGGAAACTTCGGGAT
ATTAATAACGGCCCACCAATAACCTGTAAATCGACATCGGTTCGTTGAGT
TGAACCCGATCGGCAAGTATAAATTCCCGAATCGGAATAAGTCGTATTTG
TTAGGGTTATGGAGATAATGTTTGTTTGATAGCTAACGGTTAAGCGATGT
TGGTATATCTCCATAATATCAGGTTCCAATCTCAATATAGGTGTCCGAGT
ACCACTGGTCCAGTTACCCAATTTACGAATTTCCCCATTCGATATAAAGC
TACAAATGACATTGTCTATTGTTTCAGTCTCGAGTTGGATCGTTAGAACA
GCGATTGAGCCACGACTGACAGATTCTTTTGAACGTTGAATATTAGCGGT
GGTGGTGGTCGTTTGAGTTTGTGTCAAATATACCAATGTCAAAAGTAATA
CGATTCTcattaaatatttttccattgtccgagatatttttttacttgtt
tcttTAAAATAGTTGTCTTTGAAATACGATAAGTCAAATTTTGTGAGACA
TTTGTGATACAGTTGAGTTCTCTTCTCGTCTCGattgattatttcaaaaa
tattttattttcaataattctTTGAGACACAAAAACACGCCTTTTTCAGT
ATGTAGTATCAAAGAGTGTGTGCGTGTCCTATAGTAACACAgcgaaaata
aaaagaagagtcgcttcaaaaaattgacaaaaagtttGGTTGAATCAATA
ACAACAACATCAAGAACAAGAACAATAGAACGACTAATCAATTTCACTCT
CGTTCATCATGACAacatcatttttaatgactttgctattcttttttttg
ttaatGACTATACGCAATTACCTGCTCCTCGGCTTTTATTTCTATTGTTC
AAAACGTTTTTTAACTACCGTTTCGTAAATAGGAACTATCTAGTTATTGT
TTCAATATCAGAAAAGTCATTAACGAGAAAATTATTGAGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007695XLOC_007695Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013783-exon-sc0000173-1491911889:396395..397936TCONS_00013783-exon-sc0000173-1491911889:396395..397936Clytia hemisphaericaexon
TCONS_00013783-exon-sc0000173-1510915933:396395..397936TCONS_00013783-exon-sc0000173-1510915933:396395..397936Clytia hemisphaericaexon
TCONS_00013783-exon-sc0000173-1575043694:396395..397936TCONS_00013783-exon-sc0000173-1575043694:396395..397936Clytia hemisphaericaexon
TCONS_00013783-exon-sc0000173-1491911889:398795..400486TCONS_00013783-exon-sc0000173-1491911889:398795..400486Clytia hemisphaericaexon
TCONS_00013783-exon-sc0000173-1510915933:398795..400486TCONS_00013783-exon-sc0000173-1510915933:398795..400486Clytia hemisphaericaexon
TCONS_00013783-exon-sc0000173-1575043694:398795..400486TCONS_00013783-exon-sc0000173-1575043694:398795..400486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:396395..400486 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00565285	0.0164832	0.0192816	0	0	0	0	0	0.0229348	0.021241	0	0	0	0	0	0	0	0	0	0	0	0.0159528	0	0	0.0606748	0.0270735	0	0.00826024	0	0.0582446
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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