TCONS_00013789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013789
Unique NameTCONS_00013789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013789 ID=TCONS_00013789|Name=TCONS_00013789|organism=Clytia hemisphaerica|type=transcript|length=2754bp
AAATTCGTTCGAAGAATGGAATTTTCGAGTCATGGAGTAAGGTTTGTTGT
ACTGTAAGACAACTCGCTTACCCAATCTTCATCAACAAAAGCTCCTTCAT
CGACAGTTGTTGATCAAGGCAAATGCAATCAAACATGTATCATACTGATC
TCAGCTGGAGGACTTTCAATCTTCATCATATGTTTGGTGATTATGATTTA
TTATGCTGTTTGCAAAGACAAAGATAAAAattttgtcaAACATTCACGAA
CATTTGATCAGAAATACAAACTAGCTgagcagcaacaacaacaaaaacag
gccacacaaaataatgatcaaAAGTTTAAGAAGACAGTTCTTGATAATCC
CTATGCATCAAACGCCAGCACTGCTGCAACTTCAGTTACCAATCTTTCAA
CCTCTCCAAGGATTTACCCTCAAGCGGTTGACTACATCGTTGGAAATGAA
ATTGCGAGTGTAACAAACTACTCGAATCCATACGCTGTTGATAATTTTGG
AGACACCTACCTTACTCCGTCACCTTATTCTAATATCTATCTACAAAAGG
GAGTAGACGTTCCCGACGTAGCTACCTTCTATTACGATGACCCAAACTCA
AAGTATGCTGTCTCAGGAGGAAAGCGGCAACAGATAGCCTCCATACCCCA
ATCCCCATCCTCCCCTCTAGATGGCTTATACAGTCAGTTCAATTTCAACG
GCGTCCCAAGTAACAATGGATCCTTCAAAAGTAACAAATCATCTTCTTCG
GCTACCAATAGAAAGAAAGGGGCTCCAAACCAACGTAATATGGTTACCAT
CCAAGAAGGTGCCTCGTCCGAGCACCTAAAAGTCCCAACATGTGGGGGTA
ACGTGGCTTTaaagaaaaacgtcaaaaagacacGGCAAGGGAATgtcaat
gacaaaaaagaccAAAAGCCTCAACAACCCCCGTCCCAACAGTCATTTCC
TCAGCAATACAACACCGGCTATAACNAACAACCCCCGTCCCAACAGTCTT
TTCCTCAGCAATACAACACCGGCTATAACCCACAAAACTATAACGAGCCG
AGACAATACTGGGGTGTTAACCCTGCTGACGCATACTACCCTACCACCAT
GGAATATCAACAATATCCATACCAACAAAATCAATACACACCAGTCTACC
CAACAGACTACATTAACGAAAATCAGTACTCAGGTTACGAGCCTGGGATT
GAATATGACCGGAAAGGACTAAATATGCATCAACCGACAAACGAGTATCC
GCAATCAACAAACGACTATTCACGACAATCAAGTGGTGATTACCAACCAA
GAGTTAACGAGCATCAACCCACAACCGACTATCCGCAATCGGCAAACGAC
TATTCACGACAATTAAGTGGTGATTACCAACCGAGAGTTAACGAGCACCA
ACCGACAACCGACTATCAAGATTCACCTTTACCGACAGAATATCTTACAC
AACCGAATAACGAGTATATCATCCAACCTCCGCAAGAATATCTTGAACCG
ACTGAATACAATAAACCGACAAATAACGAGTATGAACTAAATCAAGACGA
CTATGACCGAGAGTTGCCCTCGCAATTCGTAAACTCAAACGATTATAACG
AGGAAGAACCTTACGTTGAAGAATACCAAACCTCCCGCAGCTTTGTTATC
AATCAGATTCAGAAACTAAATACACAAAACcagcaaaaacaaacaaaaag
tgAAGCAAATGTTCTATCAAACGAACCTTATGAACTAGATGATGAAAATA
ATATCGATTTGAAACAATACGTTTGCTAGACTGAGACattatgtacaaaa
tataagTGAAAATGCGCCCGGATAATGTCGTAGTCCTTAATAATTAAACA
GCGTGGGTGTTAAAACCAGTATCCAGAAATTGTGGCGGGTGCGATGAATA
CACCCTCAATCTCAGGgcgaaataaaaaacaataataatgaTATTTGTTA
CTAATTTTGACTCTCATGTAATGATGATATGCAATGGCTTTCAAACGTTA
CctaatcttttctgaaaattcaTATCCAGGCAATCTCCTCATCGATCAAA
AAACCcatctggcacacaacgtttttttcgacgtttatctaaggtttcac
aacatccatataacgttagttgaacgttgaaacaacgttgtgtgccagct
gggtcagCGATCAAAAAAGGAATTAGACATGAGGACGAGGTTGAGATGaa
agatgataaaaatgaaataaacctCATCACGTTTGTTCGTCGTATCGCTT
TTATAAATAAGATGTTGTCAACAACTTGTAACATTTCTGCAATATCACAT
TCCATCTCGATAGACCTTGGCTAATTTTAAAAGAGCAATTTTCCTTAAAA
GGACCATATTTTCCATCAATAAAGGGACGACAATTAGATTGATCTTTTCA
GTGGATAGGGGCCATCGGGGGTTCTAAATGGACCTTGTTCATGAAAAACT
TGAGGCACGTACTTATCTCAAAGGTATACAATTTTGTgtttttaacagta
tcaacATCTCAACTCAATATTAGCGTAGTCGAAACTATTCCCTAAACAAA
ACCGTAATGAACTTTTGGGAAATTTGCCAGTGTAGTGGTTATGTACCGCG
GCTCCAAGAATCACTTAAAACGAAGTTAACTCAATtattcttttaaattt
aaatcaTATTTTATCATATGCCCTGTGTAATAATGCCGACATATTTCTTG
TAAATAGCTTCACCAGCTTGTATTAATTTAATTGTTTGGAAAATACCTGA
AAAC
Run BLAST on NCBI

transcript from alignment at sc0000173:178996..184217-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013789 ID=TCONS_00013789|Name=TCONS_00013789|organism=Clytia hemisphaerica|type=transcript|length=5222bp|location=Sequence derived from alignment at sc0000173:178996..184217- (Clytia hemisphaerica)
AAATTCGTTCGAAGAATGGAATTTTCGAGTCATGGAGTAAGGTTTGTTGT
ACTGTAAGGTACTGTTAACTTGTTCGAGTTCAGGAAGCATTCGAGCTATA
GATTTTCGAGTTATGAGATTCTACTGTATTATTCCAAGTCGATTCCAAGC
TCAAAGAATCCAGTGGGGCAGTGAGGTCAAGTACCGCATACTAAAGCACA
CATTCTGCCATCATGGTTCTTGTGAAAAGAAATAAACGCCGACAACTGCA
CATTTAATTAGCTTCCAATATCAATTAAGTTCAGGAAAGCTATAACATGT
AAACAAAATGTATCTCATTCAAAAGGTAAACAATATCGNTAAGTCCAGTT
AATGGGGTTAGTAATGATACAGTCAAGTCTTTATAACTCGAACATGCACA
GAGAACACAAATTCGTTCGGTAAAAACTTCTATCCAAAGTCCAATGGGGT
TAGNATACAGTTTTTGAATGAGGTACCAGATATCCGTTGCTAATCGAACC
AGCATACCGACTGACGCTTTATGAACGACTGTTGAATGCGCTAACTATAA
AAAAAAATTAACATTCGTTTTAGCATAACCTTCTCTAAAAATATGTTTAA
GAGAATAAGTAATTCATCTATACGACTGACTCGATTTGACCAGCCAGAGC
GCAGTGTTGATGAGTCCTAAGAAGGACACCTGATCACCACCCAAATCTCT
TGAGTGAATGTAGTTTGACAGAAATTATAATTTCTTCACACCTACAGATT
TTTGAAGATTTTTTTAATCAAAGTAATCAACTTACAGGTTAGCAGTCAGT
TGATCAGGTTGGCGCAGTGGTTAAAAGACGGTGCCGCCAAACAAGCAGCC
ATATATGGAGGCATCATAATAAAATGTTAGTTCTCAAATCTTTATTACGC
GCATGAGAAATCCGCTGCTAAATAGCCTATATAGCGACCATTCCAACTGG
CGCTAAGGTAATTAGAGATCTATAAATACATAAAAGGGCACATTGCTATA
CATTGTAAAAGAGTCTAGGGAGTGTAGCATCCTTTCTCTAGATCTGTGCG
TGGCGTAAAAAAATCTGTATATGTACGAAAATTTCTGAAAATGAGCCGGT
GGGATGGCGAAATATCGACTTTGCTTCGTGTTTGATGGGGTTAAAATTAG
TTTAGCACTATTTGAAGTATTTGTTTCATAAATTACTGAACCGTACATCC
TGTGCCCAAGTTCAGGAGTTGCCATAAAGCCATTATGGTAATAACCGGGA
GGGCACATTGCTATACATTGTAAAAGACAGTTTATGTATTTGCACTTTTC
AGGAAAACGAAGTGGCTGAAGCGATTTGTTATAACCCGCATTTTTAACCC
ACTCACTCGATGGCGACAAAAGTGCTTGTTTACCGTCGTCCTCAGTCAAA
TCAGAAGCTAATTGTCTGCATGCCAAAAGAAAACTCATTCTTAAACTCGC
TAAAGTTTCAGAGCGAATGTGTGTAAAATGAATACCATTGAACTTCAAAA
CAATATCATTTTACGCTTTAAACCTTCAAAAATCTACTTTTTTATCACCC
GTGCAGTACGGTAAAAAATCTTATAACGTTAACTTCATCTAAATCTCTTA
GTAGCCTTGTAAGATCAGTCTGAAAACAGTGCAAAATGTAAGAGATTAAG
CCCTTATTTTATCGGAACAAAAAGAGGGGTTTCCGGTTTTCCAAAGGTGT
TTTCCAGTACCTTTCAGGAGCCCTATCATATATCATTATGCGCGCAACCA
TACATACTGAGGGACTAGGAACGTGCTTGTGCAATAAAGCTTGCAATCAG
AATTTGATTCTCCATTGATATGGCCGTCTATTAATCTTAAAGAGTCCTTA
ATCACGTGTATAATTAAATTCAATTTTGTGCGTTGTGCACGACATTTATA
ACGTCAGTTAATTGTTAATTTAAAAGTTTACCTCGGTGATCTAGCCATTT
GCCAGGTTCCATTTTAATCTTTTATTTGTGCTGATGTGATTCATATTTTT
TTGGCACTTACCAATCTGCAGCTAAAATTCTAGGCCATCCGTAACCCTAT
TCATATCTTTTCTAACGATTTTTACTATCTCCCACTTTTTCAGACAACTC
GCTTACCCAATCTTCATCAACAAAAGCTCCTTCATCGACAGTTGTTGATC
AAGGCAAATGCAATCAAACATGTATCATACTGATCTCAGCTGGAGGACTT
TCAATCTTCATCATATGTTTGGTGATTATGATTTATTATGCTGTTTGCAA
AGACAAAGATAAAAGTAAGAATTTACATTTTATTCATTTTCAACTAGAAC
CCAATCCTCCTTTAGTCACCTTTACATGATTCTGATAGAGCTCACGCTGG
CTGTGCGGTGAAGTGATTGTGGGTACGAGAACCGACTGGGATCTGTAGTT
TTACCAGAAAACTGGTTTTTAGGCCTCCAGAGCCGCCGCCATTTTTACAG
CGCTTTACTAGAGCCTTAGTTAAGGCCAGCAATGATTGACTTGTTATCTG
ACAAAGCTATTTATCCATAAGTTTCCCAGGCCACTTTGTCCTTACTTACT
TAAACACTCACAAACAACTGCTTATGTTTATGACGCATACTCTCCTCTTA
ACAACGAAGCTATAATCTGTCAACTACACATACTTTCTATAGATTAGAAG
TAATGTTCCACAAATAACACTTACGTGAAAATTATTATATTTTTCAGATT
TTGTCAAACATTCACGAACATTTGATCAGAAATACAAACTAGCTGAGCAG
CAACAACAACAAAAACAGGCCACACAAAATAATGATCAAAAGTTTAAGAA
GACAGTTCTTGATAATCCCTATGCATCAAACGCCAGCACTGCTGCAACTT
CAGTTACCAATCTTTCAACCTCTCCAAGGATTTACCCTCAAGCGGTTGAC
TACATCGTTGGAAATGAAATTGCGAGTGTAACAAACTACTCGAATCCATA
CGCTGTTGATAATTTTGGAGACACCTACCTTACTCCGTCACCTTATTCTA
ATATCTATCTACAAAAGGGAGTAGACGTTCCCGACGTAGCTACCTTCTAT
TACGATGACCCAAACTCAAAGTATGCTGTCTCAGGAGGAAAGCGGCAACA
GATAGCCTCCATACCCCAATCCCCATCCTCCCCTCTAGATGGCTTATACA
GTCAGTTCAATTTCAACGGCGTCCCAAGTAACAATGGATCCTTCAAAAGT
AACAAATCATCTTCTTCGGCTACCAATAGAAAGAAAGGGGCTCCAAACCA
ACGTAATATGGTTACCATCCAAGAAGGTGCCTCGTCCGAGCACCTAAAAG
TCCCAACATGTGGGGGTAACGTGGCTTTAAAGAAAAACGTCAAAAAGACA
CGGCAAGGGAATGTCAATGACAAAAAAGACCAAAAGCCTCAACAACCCCC
GTCCCAACAGTCATTTCCTCAGCAATACAACACCGGCTATAACNAACAAC
CCCCGTCCCAACAGTCTTTTCCTCAGCAATACAACACCGGCTATAACCCA
CAAAACTATAACGAGCCGAGACAATACTGGGGTGTTAACCCTGCTGACGC
ATACTACCCTACCACCATGGAATATCAACAATATCCATACCAACAAAATC
AATACACACCAGTCTACCCAACAGACTACATTAACGAAAATCAGTACTCA
GGTTACGAGCCTGGGATTGAATATGACCGGAAAGGACTAAATATGCATCA
ACCGACAAACGAGTATCCGCAATCAACAAACGACTATTCACGACAATCAA
GTGGTGATTACCAACCAAGAGTTAACGAGCATCAACCCACAACCGACTAT
CCGCAATCGGCAAACGACTATTCACGACAATTAAGTGGTGATTACCAACC
GAGAGTTAACGAGCACCAACCGACAACCGACTATCAAGATTCACCTTTAC
CGACAGAATATCTTACACAACCGAATAACGAGTATATCATCCAACCTCCG
CAAGAATATCTTGAACCGACTGAATACAATAAACCGACAAATAACGAGTA
TGAACTAAATCAAGACGACTATGACCGAGAGTTGCCCTCGCAATTCGTAA
ACTCAAACGATTATAACGAGGAAGAACCTTACGTTGAAGAATACCAAACC
TCCCGCAGCTTTGTTATCAATCAGATTCAGAAACTAAATACACAAAACCA
GCAAAAACAAACAAAAAGTGAAGCAAATGTTCTATCAAACGAACCTTATG
AACTAGATGATGAAAATAATATCGATTTGAAACAATACGTTTGCTAGACT
GAGACATTATGTACAAAATATAAGTGAAAATGCGCCCGGATAATGTCGTA
GTCCTTAATAATTAAACAGCGTGGGTGTTAAAACCAGTATCCAGAAATTG
TGGCGGGTGCGATGAATACACCCTCAATCTCAGGGCGAAATAAAAAACAA
TAATAATGATATTTGTTACTAATTTTGACTCTCATGTAATGATGATATGC
AATGGCTTTCAAACGTTACCTAATCTTTTCTGAAAATTCATATCCAGGCA
ATCTCCTCATCGATCAAAAAACCCATCTGGCACACAACGTTTTTTTCGAC
GTTTATCTAAGGTTTCACAACATCCATATAACGTTAGTTGAACGTTGAAA
CAACGTTGTGTGCCAGCTGGGTCAGCGATCAAAAAAGGAATTAGACATGA
GGACGAGGTTGAGATGAAAGATGATAAAAATGAAATAAACCTCATCACGT
TTGTTCGTCGTATCGCTTTTATAAATAAGATGTTGTCAACAACTTGTAAC
ATTTCTGCAATATCACATTCCATCTCGATAGACCTTGGCTAATTTTAAAA
GAGCAATTTTCCTTAAAAGGACCATATTTTCCATCAATAAAGGGACGACA
ATTAGATTGATCTTTTCAGTGGATAGGGGCCATCGGGGGTTCTAAATGGA
CCTTGTTCATGAAAAACTTGAGGCACGTACTTATCTCAAAGGTATACAAT
TTTGTGTTTTTAACAGTATCAACATCTCAACTCAATATTAGCGTAGTCGA
AACTATTCCCTAAACAAAACCGTAATGAACTTTTGGGAAATTTGCCAGTG
TAGTGGTTATGTACCGCGGCTCCAAGAATCACTTAAAACGAAGTTAACTC
AATTATTCTTTTAAATTTAAATCATATTTTATCATATGCCCTGTGTAATA
ATGCCGACATATTTCTTGTAAATAGCTTCACCAGCTTGTATTAATTTAAT
TGTTTGGAAAATACCTGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007698XLOC_007698Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013789-exon-sc0000173-1575043694:184160..184217TCONS_00013789-exon-sc0000173-1575043694:184160..184217Clytia hemisphaericaexon
TCONS_00013789-exon-sc0000173-1575043694:181954..182124TCONS_00013789-exon-sc0000173-1575043694:181954..182124Clytia hemisphaericaexon
TCONS_00013789-exon-sc0000173-1575043694:178996..181520TCONS_00013789-exon-sc0000173-1575043694:178996..181520Clytia hemisphaericaexon
TCONS_00013789-exon-sc0000173-1510915933:184160..184217TCONS_00013789-exon-sc0000173-1510915933:184160..184217Clytia hemisphaericaexon
TCONS_00013789-exon-sc0000173-1510915933:181954..182124TCONS_00013789-exon-sc0000173-1510915933:181954..182124Clytia hemisphaericaexon
TCONS_00013789-exon-sc0000173-1510915933:178996..181520TCONS_00013789-exon-sc0000173-1510915933:178996..181520Clytia hemisphaericaexon
TCONS_00013789-exon-sc0000173-1491911889:184160..184217TCONS_00013789-exon-sc0000173-1491911889:184160..184217Clytia hemisphaericaexon
TCONS_00013789-exon-sc0000173-1491911889:181954..182124TCONS_00013789-exon-sc0000173-1491911889:181954..182124Clytia hemisphaericaexon
TCONS_00013789-exon-sc0000173-1491911889:178996..181520TCONS_00013789-exon-sc0000173-1491911889:178996..181520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:178996..184217 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.284864	0.301108	0.133032	0.104515	0.140285	0	0.11427	0.250472	0.267755	0.397037	0.541158	0.128431	0.634733	0.851602	0.83672	1.56976	4.19235	4.43585	0.109047	0.188678	0.438189	0.255554	0.2095	0.137529	0.0555771	0.0500032	0.413037	0.398028	0.156297	0.0921685
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top