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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013759 ID=TCONS_00013759|Name=TCONS_00013759|organism=Clytia hemisphaerica|type=transcript|length=2816bpRun BLAST on NCBI protein sequence of TCONS_00013759-protein >TCONS_00013759-protein ID=TCONS_00013759-protein|Name=TCONS_00013759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=714bp VFGNDPVACLFSKDWKHRECGLRFISRKAVKVLSEKRTTVLYRETKWELLRun BLAST on NCBI transcript from alignment at sc0000173:26657..34103+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013759 ID=TCONS_00013759|Name=TCONS_00013759|organism=Clytia hemisphaerica|type=transcript|length=7447bp|location=Sequence derived from alignment at sc0000173:26657..34103+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000173:26657..34103+ >TCONS_00013759 ID=TCONS_00013759|Name=TCONS_00013759|organism=Clytia hemisphaerica|type=CDS|length=21450bp|location=Sequence derived from alignment at sc0000173:26657..34103+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013759 vs. Swiss-Prot (Human)
Match: M3K1 (Mitogen-activated protein kinase kinase kinase 1 OS=Homo sapiens GN=MAP3K1 PE=1 SV=4) HSP 1 Score: 357.066 bits (915), Expect = 2.333e-104 Identity = 160/279 (57.35%), Postives = 211/279 (75.63%), Query Frame = 2
Query: 1307 KPRNVYLEKIHWKKGGLVGTGAFSSCYEVMDFKSGRIMAVKQISFVRNTEEEQEKVHQIVLEEISLLHRIKHPNIVSCLGATQHQAHYNLFMELMPGGSISSLLGKFGAFSESVTKSYTQQILQAVTYLHQDHTLHRDLKGANLLVDSTGQIVKLSDFGTAARLMANGTGTKEFCGQFLGTIPFMSPEVLRGEHYGRKCDVWSIGCCIIEMASGCPPWSEQHVDNNLALLFKIASSTTGPHIPSSLGPGMRDLTLRCLELKEANRPSSAELLQHAVFRT 2143
K + Y E W KG +G GAFSSCY+ D +G +MAVKQ+++VRNT EQE+V + + EEI ++ + HPNI+ LGAT +++YNLF+E M GGS++ LL K+GAF ESV +YT+Q+L+ ++YLH++ +HRD+KGANLL+DSTGQ ++++DFG AARL + GTG EF GQ LGTI FM+PEVLRG+ YGR CDVWS+GC IIEMA PPW+ + N+LAL+FKIAS+TT P IPS L PG+RD+ LRCLEL+ +RP S ELL+H VFRT
Sbjct: 1232 KAKQPYREDTEWLKGQQIGLGAFSSCYQAQDVGTGTLMAVKQVTYVRNTSSEQEEVVEALREEIRMMSHLNHPNIIRMLGATCEKSNYNLFIEWMAGGSVAHLLSKYGAFKESVVINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLASKGTGAGEFQGQLLGTIAFMAPEVLRGQQYGRSCDVWSVGCAIIEMACAKPPWNAEKHSNHLALIFKIASATTAPSIPSHLSPGLRDVALRCLELQPQDRPPSRELLKHPVFRT 1510 The following BLAST results are available for this feature:
BLAST of TCONS_00013759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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