TCONS_00013475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013475
Unique NameTCONS_00013475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013475 ID=TCONS_00013475|Name=TCONS_00013475|organism=Clytia hemisphaerica|type=transcript|length=502bp
AAGACCAATAACAAATTTACTAAAGAAAAAGAACAACAGTCATTTAATAA
TAAAGAACATATTTGTTTGATGCTTAATTCAAAATGACGTATTGTGCCAA
TCCACACAACCAAAAGTTTAAAGACCATTTCCAAGTTGTCTACTTATGTT
CACAATGTGATACTCAACTGTTCAATGCCAAATCCAAGTATGCACATGGT
TCACCGTGGCCTGCATTTAATGAGCCTGTAAAAGAAGGTTTATTTCGTAA
AGAAGTAGAAACACAACCTCAAACGTCCAGTGATAAACCCTCAATGAAGa
ttttttgtataaaatgtGACAACATTCTTGGACACGAGTTTCTTGGTGAT
GGACCAGATGGTGGAtcgagattttgaattttatctgATTCACTCAAATT
TGTTGCTCAATAAAATGGTTTGTATGCATCAAATATATTGTTTTCTTGTG
TAGTAAGACAACCACTCATTCTAGATGCCTTTATAATATTGCAAAGAAGA
TG
Run BLAST on NCBI

transcript from alignment at sc0000168:407865..409402+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013475 ID=TCONS_00013475|Name=TCONS_00013475|organism=Clytia hemisphaerica|type=transcript|length=1538bp|location=Sequence derived from alignment at sc0000168:407865..409402+ (Clytia hemisphaerica)
AAGACCAATAACAAATTTACTAAAGAAAAAGAACAACAGTCATTTAATAA
TAAAGAACATATTTGTTTGATGCTTAATTCAAAATGACGTATTGTGCCAA
TCCACACAACCAAAAGTTTAAAGACCATTTCCAAGTTGGTAAGaagcaat
ttttttagaatactCCTTTTACTTGTGTCTACTCTAAAACAGGACTTGTT
CATGCCCCTTTAAGCAAGCTTCATACGTGAACTAAAATCATTTGCTTTGT
TTCCAAACTTGTTTTCAGATTGCTCATTAGAGCTTCAACAGCTCATTGCC
TATCTAATTCTTCCAGTTGGATATCTTATGTGTACAATTGAAAAGTGCAG
TAATACAAAACTCTGAGAAGCGTACTTTTTTCGTTATAATGAAAGATATC
GtttaatattttgcttggctcTGATAAAAGCACACTACAATATCAATCAC
AGACACAgcaaaaggaaaaatatttcatctttctcatcttttacCAGGAG
TCTACTTATGTTCACAATGTGATACTCAACTGTTCAATGCCAAATCCAAG
TATGCACATGGTTCACCGTGGCCTGCATTTAATGAGCCTGTAAAAGAAGG
TTTATTTCGTAAAGAAGTAGAAACACAACCTCAAACGTCCAGTGATAAAC
CCTCAATGAAGGTTACTGTTATAAAATATGTCATTTAACGGTCGAAAGGA
ATCATGGGTAATAAAGACCACCGCTCTCTGACAACGATTTTTTGTTGGTC
TAAAATTTGAATGTAGAAACCTCTAATTAATGGGAAATTGATCTTAGAGT
GTCACTCTTTCGTCCATTCGTTTTCATTTTCTGCTCCCTCCACAAGCTTC
TTTTCCTTTATATTCTTCGCCACGGTATGACGTCAAGANACTGTTATAAA
ATATGTCGAAAAGAATCATGGGTAATACAAAAGACCACCGCTCTCTGACA
AAGATTTTTTGTTGGTCTAAAATTTGAATGTAGAAACCTCTAATTAATGG
GAAGCCGTTACGAGGGCGTAATTAGTCCTGATTACCtatgattcatttcg
accgtgaaatCGATCTTAGAGTGTCACCCTTTCGTCCATTCGTTTTCATT
TTCTGCTCTCTCCACAAGCTTCTTTTCCTTTATATTCTTCGCCACGGTAT
GACGTCAAGAAGTGGTTGAAAACAGTTTTGTTCGCCCCTCAAATCGTATC
GGCTGAAAGGTACATTTAAATTTTAGAGGCGAAGAGCCGGAACGCGGGTT
TGGAGTTATAAACGATAGTCACAGAGTatgatattttgtatttttatttt
cactgaTGTCTTCACTCCTTAAATCCtttcttcagattttttgtataaaa
tgtGACAACATTCTTGGACACGAGTTTCTTGGTGATGGACCAGATGGTGG
AtcgagattttgaattttatctgATTCACTCAAATTTGTTGCTCAATAAA
ATGGTTTGTATGCATCAAATATATTGTTTTCTTGTGTAGTAAGACAACCA
CTCATTCTAGATGCCTTTATAATATTGCAAAGAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007531XLOC_007531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013475-exon-sc0000168-1491911889:407865..408002TCONS_00013475-exon-sc0000168-1491911889:407865..408002Clytia hemisphaericaexon
TCONS_00013475-exon-sc0000168-1510915933:407865..408002TCONS_00013475-exon-sc0000168-1510915933:407865..408002Clytia hemisphaericaexon
TCONS_00013475-exon-sc0000168-1575043694:407865..408002TCONS_00013475-exon-sc0000168-1575043694:407865..408002Clytia hemisphaericaexon
TCONS_00013475-exon-sc0000168-1491911889:408365..408525TCONS_00013475-exon-sc0000168-1491911889:408365..408525Clytia hemisphaericaexon
TCONS_00013475-exon-sc0000168-1510915933:408365..408525TCONS_00013475-exon-sc0000168-1510915933:408365..408525Clytia hemisphaericaexon
TCONS_00013475-exon-sc0000168-1575043694:408365..408525TCONS_00013475-exon-sc0000168-1575043694:408365..408525Clytia hemisphaericaexon
TCONS_00013475-exon-sc0000168-1491911889:409200..409402TCONS_00013475-exon-sc0000168-1491911889:409200..409402Clytia hemisphaericaexon
TCONS_00013475-exon-sc0000168-1510915933:409200..409402TCONS_00013475-exon-sc0000168-1510915933:409200..409402Clytia hemisphaericaexon
TCONS_00013475-exon-sc0000168-1575043694:409200..409402TCONS_00013475-exon-sc0000168-1575043694:409200..409402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:407865..409402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.4233	9.15131	4.7662	5.2094	7.97395	7.27053	8.77158	10.9491	4.27004	2.73861	5.03476	6.18079	2.99174	4.92315	13.0941	12.8993	2.48775	4.5615	4.83508	2.61961	2.65036	3.7488	6.30583	4.78407	12.3503	9.86209	0.62368	1.59473	2.32148	3.04012
Blast
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BLAST of TCONS_00013475 vs. Swiss-Prot (Human)
Match: MSRB1 (Methionine-R-sulfoxide reductase B1 OS=Homo sapiens GN=MSRB1 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 2.317e-24
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 3 
Query:   84 MTYCANPHNQKFKDHFQ-VVYLCSQCDTQLFNAKSKYAHGSPWPAFNEPVKEGLFRKEVETQPQTSSDKPSMKIFCIKCDNILGHEFLGDGPD-GGSRF*ILSDSLKFV 404
            M++C+    + F++HF+  VY+C++C  +LF+++SKYAH SPWPAF E +        V  +P+ +  + ++K+ C KC N LGHEFL DGP  G SRF I S SLKFV
Sbjct:    1 MSFCSFFGGEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHA----DSVAKRPEHNRSE-ALKVSCGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFV 104
The following BLAST results are available for this feature:
BLAST of TCONS_00013475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSRB12.317e-2445.87Methionine-R-sulfoxide reductase B1 OS=Homo sapien... [more]
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