TCONS_00013338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013338
Unique NameTCONS_00013338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013338 ID=TCONS_00013338|Name=TCONS_00013338|organism=Clytia hemisphaerica|type=transcript|length=752bp
TCCAGCGCTTAAATTACAGTACGAAAGCGAATAAAACTTATACtgtacaa
ttgaatcaatcgaatgtaatcgaacATAATCAAATACAATTGAAAGTAAT
CAAAGCGATTGAACCGCAAATTCttggtaatatttgattgcgattcgatt
gtgttcaattgggttcaattgattcggcatTCGATTCGTtcaattgacac
cgtctggctacTTTGACCTTTTCAAGACCTTTTTTAAGCCATTGGAGATT
GcttagagaaaaaatttttgcctGCACTCTGGCAGTTGCTAATATTCTAA
TGTAGCTTCAAATCATTCGTTTTGATAGGTCAAAGAACATTTTAGGAGGG
GGGTACCAAAAATATATTGACTGGTTAGGGGGGGGGCTTGAAATTCTTTT
GAGGATATCTAGGACAATACAATCAAATATCAATATTTGAGCTATCATAG
TTGCCAGCCGTCCCACATTTAAGCTCGTTGTCCCGAGTTCTGCCCGCATA
CCTTAGATGTCCCGCATTTTCGAGAAAACTCAGAAATTCGTAGAACTCTt
agaaaaaatatagaaatgctACTAAAAATATGTTTCCACAAGCACAAACT
cacttctttgttttttctcttCGCTCCGTAACGGTCCGTCCAATTGCGTG
CGTCCATCTGTATTCAATACATCGGATACGCGTTGGACAGAGATGTAATA
GTACTACATGAACAGGGTGTGTCCCgtagaaaaccttgaaaaccttgaaa
ac
Run BLAST on NCBI

transcript from alignment at sc0000164:275465..276216

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013338 ID=TCONS_00013338|Name=TCONS_00013338|organism=Clytia hemisphaerica|type=transcript|length=752bp|location=Sequence derived from alignment at sc0000164:275465..276216 (Clytia hemisphaerica)
gttttcaaggttttcaaggttttctacGGGACACACCCTGTTCATGTAGT
ACTATTACATCTCTGTCCAACGCGTATCCGATGTATTGAATACAGATGGA
CGCACGCAATTGGACGGACCGTTACGGAGCGaagagaaaaaacaaagaag
tgAGTTTGTGCTTGTGGAAACATATTTTTAGTagcatttctatatttttt
ctaAGAGTTCTACGAATTTCTGAGTTTTCTCGAAAATGCGGGACATCTAA
GGTATGCGGGCAGAACTCGGGACAACGAGCTTAAATGTGGGACGGCTGGC
AACTATGATAGCTCAAATATTGATATTTGATTGTATTGTCCTAGATATCC
TCAAAAGAATTTCAAGCCCCCCCCCTAACCAGTCAATATATTTTTGGTAC
CCCCCTCCTAAAATGTTCTTTGACCTATCAAAACGAATGATTTGAAGCTA
CATTAGAATATTAGCAACTGCCAGAGTGCaggcaaaaattttttctctaa
gCAATCTCCAATGGCTTAAAAAAGGTCTTGAAAAGGTCAAAgtagccaga
cggtgtcaattgaACGAATCGAatgccgaatcaattgaacccaattgaac
acaatcgaatcgcaatcaaatattaccaaGAATTTGCGGTTCAATCGCTT
TGATTACTTTCAATTGTATTTGATTATgttcgattacattcgattgattc
aattgtacaGTATAAGTTTTATTCGCTTTCGTACTGTAATTTAAGCGCTG
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007452XLOC_007452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013338-exon-sc0000164-1491911889:275465..276216TCONS_00013338-exon-sc0000164-1491911889:275465..276216Clytia hemisphaericaexon
TCONS_00013338-exon-sc0000164-1510915933:275465..276216TCONS_00013338-exon-sc0000164-1510915933:275465..276216Clytia hemisphaericaexon
TCONS_00013338-exon-sc0000164-1575043694:275465..276216TCONS_00013338-exon-sc0000164-1575043694:275465..276216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:275465..276216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.434519	0.303541	0.443864	0.695296	0.17622	0.0939717	0.335	0.15728	0.220231	0.477386	0.132389	0.0870275	0.347626	0.0550086	0.148401	0.214566	0.355988	0.100545	0.175456	0.807168	0.145701	0	0.16825	0.0681073	0.420894	0.313031	0.293328	0.178836	0.435111	0.332067
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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