XLOC_011507 (gene) - C. hemisphaerica

Overview
NameXLOC_011507
Unique NameXLOC_011507
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000357:130843..140802+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011507 ID=XLOC_011507|Name=XLOC_011507|organism=Clytia hemisphaerica|type=gene|length=9960bp|location=Sequence derived from alignment at sc0000357:130843..140802+ (Clytia hemisphaerica)
TTTAAAGAACTTTTATATGAATAGCAAACTGCATTGGAAAAGCAGTATAG
ATATTAGGGGACATAAAAAGGTCtagaaataaagtaaaaatgaaTATTCA
ACTTGTGTataatttgatcattttgatGGTTCTGAGGAACACCAGAGCTA
AAGTAGAAGAACACAAGATTTCAGATGAAGAACATTTTCACAAGGATGGG
AAGCATGACACATCATATGACCATGATGCGTTCTTAGGGAAAGGGCATGG
ACACGACTTTGATGGTCTAGAACCGCAAGAAGCCAAACGAAGATTGAGAG
AAATGCTTAAAAAGGTAAGGAGAGTATAGAGATTACATAGatcagcaaaa
tttcatagTGATAATCCAAAGAAGTGACAAGCTGACGTTATATAGATGTT
ATGAATGTTAAATTGCTGAAACTCTACACTCATGCATCACACTTAAAACA
GGTCTAAAAATCAGTTCTGAAGCAGATTTTAACCTTTCAAATTTAGTGAA
ATAGTCATCAGGTGTATTATTTTTCTGGCTAAACAAAGCCCTAATGCCAA
AACATATTCGACTAACAAAGCATTTATGAACTTTCCAACAGTTaccaaaa
atgattttgtcCGTCTTTGAAGATACTAAAATGCAGGAGAACGACGTCAA
CAGAGATCGTCTTGACcttgaaatgaatgaaaatggcTGAAATCTAACAC
AAGTTTAACATAAGTCCATATATAGGTCTTAGATTTACCAGAAAAAAAGC
GCACATAaccagaaatatgattttgttAGAAGTTGATTAAATAAGAGTGG
CGAATTGATAGAAAGTTCCATTTTTAATCTGACAGGTTGACACGGACAAA
GATGGATTCATTTCATTCGAAGAACTTCGTGATTGGGTGGATAAACAAAG
GATATCGTACATGTGGGAGACACTGGATACAAACATTCGACAAAATGATG
ATGACCATGATGGCTTGATCACGTGGATCGAATATAAACATTCTCAATTT
GGAAAATGGGAAGACGCAGAGACGGAGATAGATGCTGTAAGTAACACTGC
TGAGTCTCCCGGAACTCTCTACAGTCAATTCTTTCTAGTTCGAATctcta
taatttgaataaaatcaaattagaAAGAATAAACTGTAACTTGAATGTCT
TGTCAGCTCAAAACAGGTTGTCTGGTTGCAGGTTATCAGACATCAAATCT
CCATAACTTGGAACTCTATTATAAGTCGAATTCCTCTAAGCCCGAAAAAG
GTTATCTGGTCCCTTCAGACATCAAATCTCcataatttgaacaaatttgc
GTTTCTTTAGCCGTTCAAATGTATTTAATGATTCTTATATAAGACAGCTC
ATGACTGAAGCGTGAATGCAACAGAACAGGTCATTTTCTCTCCCCGTATC
TCACTTCAACAAGACATAAAGATCAGCTTTCCAAAGAAATTAGCAAAGAT
CAGCACATAGTGAACGAGCTACAGTtgacactctataattcgacaTTCTA
ATGTTCGATGCGCTCcgttattcgataatattgaaagtcaccgtcaataa
gagactctctaaacgacgctctattattcgatgaaaattcgaTTCcccat
gaagatcgaattagagagcgtcatcTGTATTTTGATATGGCACAAAAGCA
ACGAAACTGCGAGCTTTTAGTATTAACGCCAATCAAGTAACGTGTTGagc
attttcaaatattgtgCCATATTTTTCCATAGAAATTACAAGCACGTATT
AACAAATCAGAGAACAAATTCAAACTCGCTGATACAAATGGTGACGGCAA
ATTAAGTCGCGACGAATTCGCATTTTTCCGACATCCTGAAGAGAGTCGAG
ATGAGAAATTACAAGACGTTGCTGTCGATGAGGTCATTGATGATATGGAC
CAAAATGGTGACCGGTAGGTGGTTTTTAAACATTGTTTTAAGTGCTTCCA
GTGTTGCCAAACAGTGATAATGCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCAAAATTTTCtagctcgcttcgctcgcacactcccttttttgtgttc
ataatgagcgtatagagaggggcgccaaaaacaaaaaatctttaaaaagg
gcgccgtatttgccttggccaccccagagaaattttcccaccacgccact
gtcTTTAGCCGTTCAAACGTATTTAATGATTCTTTTATAAGACGGCTCAT
GACTGAAACGTGAATGCAACAGAACAGGCCCGTATCTCACTTCAACAAGA
CAAAAAGATCAGCTTTCAGTCTTTCAAAGAAATTAGAAGAGATCAGTTCA
TAGTGAAAGAACTTTTTCGATACGGCACAAAAGCACCGACTCTGAGCCTT
AGTATCAACGCCAACCAACTAAGTATTGCATTCAACATTTTCACACATTT
GTACCATATTTTTTCCATAGAAATTACAAGCACGTATTAACAAATCAGAG
AAGAAATTCAAGCTCGCTGATACAAATGGTGACGGCAAATTAAGTCGCGA
CGAATTCGCATTTTTCCGACATCCTGAAGAGAGTCGAGATGAGAAATTAC
AAGACATTGCTGTCGATGAGGTCATTGATGATATGGACCAAAATGGTGAC
CGGTAGGTGGTTTTTAAACATTGTTTTAAGTGCTCTCAGTGTTGCCAAAC
AGTGATAATGCATACTTTTTGCTTTTGTGCTtctaatataatataatata
atatataataaaaattttggctGTGAATAAGGTCCTATATATGTTTGGCT
CAAATTGTCTCGACCATATATCATAAAAGGGGCAGCCAAGGAATTGCTTC
ATATATAAGAGCGAGAATAGAGCAAGTTGAATGGAGCACAAcatttgact
ttatttttatttttcaggaaaattgaTCAAGAAGAATTTTTGGGTCAATA
CGTGGACGATGCAAATAATCCCCCTGATTGGGTCCTCGAAGATAGAAAAC
ATTTCCGTGACAAGCTAGACAAAAACAAGAACGGAATGTTGGAGCGAGAA
GAAATGAAAGCCTGGGTACTACCCAATCGTGATGACACATTGAAAGAAAC
AAANGCTGACAACGTTCTTTGAACGTCGATTTAACGTTATATAGATGTTA
TGAATGTTAAATTGCTGAAACTCTACACATGAGTGTATCACACTTAAAAC
AGGTCTAAAAATCAGTTCTGAAGCAGATTTTAACCTTTCAAATTTAGTGA
AATAGTCATCAGGTGTATTACTTTTCTGGCTAAACAAAGCCCTAATGCCA
AAACATATTCGACTAACAAAGCATTTACGAACTTTCCAACAGTTaccaaa
aaatgattttgtccGTCTTTGAAGTTATTAAAATGCAGGAGAACGACGTC
AACAGAGATCGTCTTGACcttgaaatgaatgaaaatggcTGAAATCTAAC
ACAAGTTTAACATAAGTTCATTATGGGTCTTAGATTTACCAGAAAAAAGC
GCACATAACCAcaaagggggggggtttcacggggtacccgattccgtaat
tccgccaattttttctccaatttccgtcacaccgtcttaaattgaaccaa
aatcccgtcaccgaaaattcctttgaaattcaatatttttgtcgaaaatt
ccgcaaattttgaaaatcttttcccaattccgaaattccgcaaatttttt
ttgctaaattccgtttttccgcactaaaatttcctaattttccgtctccg
tcagagaacccaatttccgtaattccgtctaaattttcgccaaattccgc
cactccgtccgaaaaaagggccgattccgctcctccgccaaccatgaacc
cccccccaCAAATGATTTTGTTAGAAGTTGATTGAATAAGAGTGGTGAAT
TGATAAAAAGTTACCATTTCTTATCTGACAGGTTGACACGGACAAAGATG
GATTCATTTCATTCGAAGAGCTTCGTGATTGGGTTGATAAACAAAGGATA
TCATACATGTGGGAGACACTGGACACAAACATTCGACAAAACGATGATGA
TCATGATGGCTTGATCACGTGGATCGAATATAAACATTCTCAATTTGGGA
AATGGGAAGACGCAGAGACGGAGATAGATGCTGTAAGTAACACTGCTGGA
TCCCAACACTGTTTAGTCTCCCGAAACTTTCTACAGTCCATTCTCTCTAG
TTCGAATCTctatattttgaataaaatcaaattagaAAGAATAAACTGTA
ACTTGAATGTCTTGTCAGCTCAAAACAGGTTGTCTGGTTGCAGGTTATCA
GACATCAAATCTCCATAACTTGGAACTCTATTATAAGTCGAATTCCTCTA
AGCCCGAAAAAGGTTATCTGGTCCCTTCAGACATCAAATCTCcataattt
gaacaaatttgcGTTTCTTTAGCCGTTCAAATGTATTTAATGATTCTTAT
ATAAGACAGCTCATGACTGAAGCGTGAATGCAACAGAACAGGTCATTTTC
TCTCCCCGTATCTCACTTCAACAAGACATAAAGATCAGCTTTCCAAAGAA
ATTAGCAAAGATCAGCACATAGTGAACGAGCTACAGTtgacactctataa
ttcgacaTTCTAATGTTCGATGCGCTCcgttattcgataatattgaaagt
caccgtcaataagagactctctaaacgacgctctattattcgatgaaaat
tcgaTTCcccatgaagatcgaattagagagcgtcatcTGTATTTTGATAT
GGCACAAAAGCAACGAAACTGCGAGCTTTTAGTATTAACGCCAATCAAGT
AACGTGTTGagcattttcaaatattgtgCCATATTTTTCCATAGAAATTA
CAAGCACGTATTAACAAATCAGAGAACAAATTCAAACTCGCTGATACAAA
TGGTGACGGCAAATTAAGTCGCGACGAATTCGCATTTTTCCGACATCCTG
AAGAGAGTCGAGATGAGAAATTACAAGACGTTGCTGTCGATGAGGTCATT
GATGATATGGACCAAAATGGTGACCGGTAGGTGGTTTTTAAACATTGTTT
TAAGTGCTTCCAGTGTTGCCAAACAGTGATAATGCATACTTTTTGCTTTT
GTGTTtctaatataatataatataatatataataaaaattcTGGCTGTGA
ATAAGGTCATATATATGTTTGGCTCAAATTGTCTCGACCATCTATCATAA
AAGGGGCAGGACTTGCTTCATATATAAGAGCGAGAATAGAGCAAGTTGAA
TGGAGCACAACatttgactttctttttatttttcaggaaaattgaTCAAG
AAGAATTTTTGGGTCAATACGTGGACGATGCAAACAACCCCCCTGATTGG
GTCCTCGAAGATAGGAAACATTTCCGTGATAAGCTAGACAAAAACAAGAA
CGGAATGTTGGAGCGAGAAGAAATGAAAGCCTGGGTACTACCCAATCGTG
ATGACACAttgaaagaaacaaaacatttgATTGCAGATGCAGATGATAAT
GAAGATGGTAGACTGAGCTTCGATGAAGTTGCCGatcattttcaaacttt
tgttgGTAGTACAGCTACTGATCATGGACAGGCTTTAAGAGATGAATTat
agaaattttaaacattaaatTCTACCCTAGAAGTATGATATTTGGTTTCA
AGCTTACACATGGGAATCATCTAAGTGTATtcagctacacgttttttttt
aatataaggaatacgtttataaggaactcgaggctgaaaatggtccgaaa
actaaggaattgttaaggaactggtcaggctgagaataagaaaacaagtt
caGGAACAGAGAGTTAAATTTGAACTTGTACACATATTGACGAAACAACA
TTCAATAAACGTCTTTTTCTGTACTGTAGTTACATCCAATATTAGCAATC
AAGtcaataaggaactcgataaagaactttgaagctgaaattctctggaa
aaataaggaactccaggctcgggaccaagttaaggttccttattaaaaaa
acgtgtattacgaGTCGTGCTATTACAGAAGAAAAGTATCATACTTCTGG
GATATAGACGATAGATAGTTatgtaaaaatgttaaaattaatTAATCATG
TTATAGAATAATTTTACTCAATGAAAACCTCCTGTAAGGATAggcatatt
ttatttttcattttccaaagtCAGTGTATGCATGATTTCAAAAGAAAgga
ctttttataaatatagtctgaaaaaataaaagtgttttGTAAATATCACC
ACCGGCTTATACCTAAAATTCTGGAAAAAGTTCACTAAGGTTATGAGAAT
AGTACAATTTTGAACATTCACACATTTGCGTGTGTTGTGATTATATCTTA
CACattacaaaataaataaagtattgtcaaaaaaaattaaattgtttgTT
GAGCACTAATAAAAAATataactgaaaaaataattGTTACCTTATATTGT
ATGAAGTAAAGCACTACgaagaaaattgaataaattgaattaaaaaaacc
aTATTTGCATCATCCTACCTAACCTAACATTCGACAGCAGACTTAGCCAC
TGTAAATGaagaatagtttcaattttgtttacttttatgCGCTTAATGGC
GATCTTAGTTCATAGAGAAAAGTCGATATCCCTATTTTCGTAATCAGATA
TAGTGAACCTCCGATGAGCATATTGACCATAAGGTAGTCTTAAAAACGAC
GAAATTTCATTCTTTTCTTATAATTAGCTACACGGAAAGGATAGAAAGTT
TCCTTCAGGAAAACAATTTGTTGAATGGATTCCTATGGAATATATTGAAA
AAACATTACatgaaaaatatcatttttctaaACAGCTAACacttgaaaaa
ttatcaaaaattcactaaaaacaTGAAGCCAAATTAAGCTTCGGTTAAAT
TCTTATAAACATTATGCTCGATTACAGTTTTTTGTATACCACCTGGTGAA
TCTACACTTTTGCCGTGTAACAGGGCTAAATGTAAAGATAACAGTTGAAG
AGGGATGACAGCCAGGATACCGGATAAACAATCTACAGTTTTGGGGATGG
CGATGGTTACACCGGCGAATTTCTTGATATCTTCATCACCTTCTTCACAA
ATGACCAATGGTTTACCACCACGTGCTCTCACTTGCTGCACTGCATTCAT
ACATTTATCATAGATGCTATCCCTCATCACAATCATAATAATAGGTTGCT
CCTCGTCAATTAAAGCTAACGGACCATGTTTCAATTCACCAGAATGGATT
CCTTCAGAATGCATGTTAGCAATCTCGATCAACTTCAAGGAACCTTCAAA
ACTGGTCGCCTGGTGATAACCACGACCTAACAGAATCAATGAACGCTTAT
TGGTGACATCTTCAGCAAGCTTTTTGATGTCATCATTCAGCTGTAAGACT
TTGGAAATCTTCTCCGGTAAAATTTGCATCTCATCGATAATGCTACAGAT
GCGATCGTGTTTCGAACGCTTGTCACCCGCCATGAAAATAGCGAACATGA
CGAGGGAGATGAATTGACATGTGTATGTCTTGGTGCTGGTCACTCCAACT
TCAACACCAGCATTGATATTGATCCCACAATGTGTTTCCTCGGACAATCG
AGAATTCTCTTCATTGGTAATCCCCACAACCAAGGCATCCCGTTGTTTGC
AATACATCAATGCAGACAAAACAGAAGAAGTTTCACCAGACTGACTGATA
AAAATACAAACATCATCCCTAAAAACTGGGACCTCTCGATCCAAAAAGTC
ACTAGCCAACTCCACAAAGACTGGAATCTCCAACAACTCTTCCATCGTTT
GACGTGTGCCAACAGCTACATGGTAACTGGAAGCAGCACCGACGCAAATG
ATTCGCCGGCATCTGTTGATTTCATCTCTGTATCGCTCGATTCCACCTAA
ATTGACTCGGTGATTCTTGAAATCGACACGTCCACTCATGGCTTGTTTGA
TGGCCACTGGTTGGTCCATGATCTCTTTCTCCATATACGTACTGTATCTC
CCTATGGGTATAAagagaaatcaatgaaataccATTTCAATAAAGTTATA
GTGAATATCTATTTGTCGTTACTTGATACTAGCCAATATCATCAGTGTTG
CAACCGTCTTGGTAAAACTGGATGGAATGTCTAAAACCCGACCAAGGCTA
AGCGGAAATCCATGTTAAAAAGACGGGACAGTTGCAAGATTATATGATAC
ACTGCGAGCCTTACACAGGTGAAGGGCATCTNTGCCATGAAAATAGCGAA
CATGACGAGCGAGATGAATTGACATGTGTATGTCTTGGTGCTGGTCACTC
CAACTTCAACACCAGCATTGATATTGATCCCACAATGTGTTTCCTCGGAC
AATCGAGAATTCTCTTCATTGGTAATCCCCACAACCAAGGCATCCCGTTG
TTTGCAATACATCAATGCAGACAAAACAGAGGAAGTTTCACCAGACTGAC
TGATAAAAATACAAACATCATCCCTAAAAACGGGGACCTCTCGATCCAGA
AAGTCACTAGCCAACTCCACAAAGACTGGAATCTCCAACAACTCTTCCAT
AGTTTGACGTGTGCCAACAGCTACATGGTAACTGGAAGCAGCACCGACGC
AAATGATTCGCCGGCATCTGTTGATTTCATCTCTGTATCGTTCGATTCCA
CCTAAATTGACTCGGTGATTCTTGAAATCGACACGTCCACTCATGGCTTG
TTTGATGGCCACTGGTTGGTCCATGATCTCTTTCTCCATATACGTACTGT
ATCTCCCTAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00020467TCONS_00020467Clytia hemisphaericatranscript
TCONS_00020468TCONS_00020468Clytia hemisphaericatranscript
TCONS_00020469TCONS_00020469Clytia hemisphaericatranscript
TCONS_00020470TCONS_00020470Clytia hemisphaericatranscript
TCONS_00020471TCONS_00020471Clytia hemisphaericatranscript
TCONS_00020472TCONS_00020472Clytia hemisphaericatranscript
TCONS_00020473TCONS_00020473Clytia hemisphaericatranscript
TCONS_00020474TCONS_00020474Clytia hemisphaericatranscript
TCONS_00020475TCONS_00020475Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000357supercontigsc0000357:130843..140802 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.11	5.72	2.23	1.77	0.18	0.12	0.82	0.84	6.27	9.06	1.92	3.33	33	20.61	17.56	17.1	45.61	50.93	40.68	57.28	42.88	56.38	20.52	31.21	23.15	32.71	1.88	1.65	15.63	14.48