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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013087 ID=TCONS_00013087|Name=TCONS_00013087|organism=Clytia hemisphaerica|type=transcript|length=2154bp
taagaacattgatgtatgcttattaatagtgattcttataaataaagatg
cgttttttgagctgaaaaattctttttttacaaaaatctgcttgagccat
cttttacctactttcatgtaaaaatcagaaaaaaacaatgatccaatgtt
tcacaaagtccaaaaaactcttttttagccgttttttggcccaaatttgc
ccaaaaacatttttttttcgaaaattgggctccgtcacattttggccact
accattttgcacctttgtaccaaaaatcaaaagattcctatgattcaatc
ctgagaaaagttggtaacagacgaacggacgaacaaacacaggttaattt
ataggacctccaccggggtaggtccaaaaatgactgtttaagCTTGCCCA
TATCAAGATTGACCAGAAACAATAAGATTTGATATGATTTTACCAAAGCC
TCAAAGTAGGAAAATTAATAAATCGAAAAGTGGGCTACATTACCAGATTC
ATGCTCTTATTTATACACTTTAACATCTACACAGTaggaaatgttgaaaa
ttttatgatGGCATGATAAAAAGTTACATTGAACACTCTATGTGTGCTAC
TTCATTTAATCAAACTATTGttataaataaattataaataaattataaag
TAAGTCAAGTCATTGTTATAAAATGTCACAACACGATTCATTCATGTATT
TTCTGGAGTAAGAGGAACTCTTTCTTTCTGCAATTCAATATTTGATCTTT
TCAGGTTTTCTTTGATGAAGAAACATAAGAGAAAACCAGTGGTATAGAAC
CCAGTAACAATGGCACATGTCAAAAACAAATAGTTAGCATCAATCAATCT
TCCCATGGTAATGATAACAAGAAACCCAAAACCATTTCCAAACATCAAAG
AAACACCACTTGAAAGTCCTTCTGATATTGGGTATGTCAGCTCAGCAGAA
TAAGACATACCAATAGCCATAAAAGGGATGCTGAAAATACAAAGTGTAGC
ATATGTAAGGAATAGTAACAATTTGACTTTCCAATACAATATCACAGAAC
TAAATGCTATCCAGCTTAGAATCTGCATAAAAAACAGGAAAAACATCATT
TTCTTGTAACATTTGTATTTGTCAACAATGGAAGCAAAGACAATGACACC
AATTATAGTTGCAGTGTTGCCTGTGAACCCTATCCAACCAATGTTTTTGG
AGTTCGCAATGTGACTTGCCATTTGGTTCaaacaaatgataaaaaagttg
aataaGCCTGCCTGTATACCAAAAGCAAgacaaaatatcatgaaattttt
atcatgtaGAAGCATTCTTAAGGATTGTTTAAAGCAAGGTGTGGCAACTC
TTTCATCGATAGTAATGCTTGAACTATCGAGAACAGCTTTTGCATAAGAG
GGTGGTAATGGaggtttttcatcaaaaaacaaataaGCTGAAATCAAACA
CACTGCTAAGAGAGCAACATGCGAGATATTCATCCTCAATAATCCATCAT
AAATTTCATCCATATTGTCACTATCTGGAACCATGTAAGAGGGCTGTAAA
AAACCAATAGCTTGTCCAATGAGATTGAAAATGCCTGATAAACCTATAGC
TTTTGCATACTCTTGTTCAGAAAACCATACCATAGATAAGCGTGATGGTA
TTTGTGCTACTGCTCCAACCGACAAAGCAGAAAAAATCTGACCCGTCATA
ACAAACAAAATCCCTTGCTGTGTTGTACCAGCTAGATGAAGACACACACA
AACTCCATTTAAACTGGATCCAATTATTAAAAGTGTTTTGATTCCAAAAT
TGTCCATGCAGTAAGCTGATGGGAGGGCAATCAAGACATAAACCAAGCTA
AAAATATTTCCGGCCCAGTCAGTCAACTCAGGTGATATATGGTAATACTT
GCAAACAATTTTGTTAATAGCAGTAATACATGTGAACAAAGTTGTGTTAG
CCATCGAATTAATAGAGAATATTAACAATATGAGCCATCGTTTCTTATAA
ACTTTAACAGTCGAAGGTGTCTGTATGTCATCATTTGAATTAATAAGTTT
TTCAGTGTCTGTCATTATGGtatctaaaaaaaattgtatctaCTCAATGT
TAGAAGAGTTATTAGTTGTATGAAAAACATGATTGGATGCATAACACAAC
CAGG Run BLAST on NCBI transcript from alignment at sc0000162:215992..218145+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013087 ID=TCONS_00013087|Name=TCONS_00013087|organism=Clytia hemisphaerica|type=transcript|length=2154bp|location=Sequence derived from alignment at sc0000162:215992..218145+ (Clytia hemisphaerica)
taagaacattgatgtatgcttattaatagtgattcttataaataaagatg
cgttttttgagctgaaaaattctttttttacaaaaatctgcttgagccat
cttttacctactttcatgtaaaaatcagaaaaaaacaatgatccaatgtt
tcacaaagtccaaaaaactcttttttagccgttttttggcccaaatttgc
ccaaaaacatttttttttcgaaaattgggctccgtcacattttggccact
accattttgcacctttgtaccaaaaatcaaaagattcctatgattcaatc
ctgagaaaagttggtaacagacgaacggacgaacaaacacaggttaattt
ataggacctccaccggggtaggtccaaaaatgactgtttaagCTTGCCCA
TATCAAGATTGACCAGAAACAATAAGATTTGATATGATTTTACCAAAGCC
TCAAAGTAGGAAAATTAATAAATCGAAAAGTGGGCTACATTACCAGATTC
ATGCTCTTATTTATACACTTTAACATCTACACAGTaggaaatgttgaaaa
ttttatgatGGCATGATAAAAAGTTACATTGAACACTCTATGTGTGCTAC
TTCATTTAATCAAACTATTGttataaataaattataaataaattataaag
TAAGTCAAGTCATTGTTATAAAATGTCACAACACGATTCATTCATGTATT
TTCTGGAGTAAGAGGAACTCTTTCTTTCTGCAATTCAATATTTGATCTTT
TCAGGTTTTCTTTGATGAAGAAACATAAGAGAAAACCAGTGGTATAGAAC
CCAGTAACAATGGCACATGTCAAAAACAAATAGTTAGCATCAATCAATCT
TCCCATGGTAATGATAACAAGAAACCCAAAACCATTTCCAAACATCAAAG
AAACACCACTTGAAAGTCCTTCTGATATTGGGTATGTCAGCTCAGCAGAA
TAAGACATACCAATAGCCATAAAAGGGATGCTGAAAATACAAAGTGTAGC
ATATGTAAGGAATAGTAACAATTTGACTTTCCAATACAATATCACAGAAC
TAAATGCTATCCAGCTTAGAATCTGCATAAAAAACAGGAAAAACATCATT
TTCTTGTAACATTTGTATTTGTCAACAATGGAAGCAAAGACAATGACACC
AATTATAGTTGCAGTGTTGCCTGTGAACCCTATCCAACCAATGTTTTTGG
AGTTCGCAATGTGACTTGCCATTTGGTTCaaacaaatgataaaaaagttg
aataaGCCTGCCTGTATACCAAAAGCAAgacaaaatatcatgaaattttt
atcatgtaGAAGCATTCTTAAGGATTGTTTAAAGCAAGGTGTGGCAACTC
TTTCATCGATAGTAATGCTTGAACTATCGAGAACAGCTTTTGCATAAGAG
GGTGGTAATGGaggtttttcatcaaaaaacaaataaGCTGAAATCAAACA
CACTGCTAAGAGAGCAACATGCGAGATATTCATCCTCAATAATCCATCAT
AAATTTCATCCATATTGTCACTATCTGGAACCATGTAAGAGGGCTGTAAA
AAACCAATAGCTTGTCCAATGAGATTGAAAATGCCTGATAAACCTATAGC
TTTTGCATACTCTTGTTCAGAAAACCATACCATAGATAAGCGTGATGGTA
TTTGTGCTACTGCTCCAACCGACAAAGCAGAAAAAATCTGACCCGTCATA
ACAAACAAAATCCCTTGCTGTGTTGTACCAGCTAGATGAAGACACACACA
AACTCCATTTAAACTGGATCCAATTATTAAAAGTGTTTTGATTCCAAAAT
TGTCCATGCAGTAAGCTGATGGGAGGGCAATCAAGACATAAACCAAGCTA
AAAATATTTCCGGCCCAGTCAGTCAACTCAGGTGATATATGGTAATACTT
GCAAACAATTTTGTTAATAGCAGTAATACATGTGAACAAAGTTGTGTTAG
CCATCGAATTAATAGAGAATATTAACAATATGAGCCATCGTTTCTTATAA
ACTTTAACAGTCGAAGGTGTCTGTATGTCATCATTTGAATTAATAAGTTT
TTCAGTGTCTGTCATTATGGtatctaaaaaaaattgtatctaCTCAATGT
TAGAAGAGTTATTAGTTGTATGAAAAACATGATTGGATGCATAACACAAC
CAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013087-exon-sc0000162-1491911889:215992..218145 | TCONS_00013087-exon-sc0000162-1491911889:215992..218145 | Clytia hemisphaerica | exon |
| TCONS_00013087-exon-sc0000162-1510915933:215992..218145 | TCONS_00013087-exon-sc0000162-1510915933:215992..218145 | Clytia hemisphaerica | exon |
| TCONS_00013087-exon-sc0000162-1575043694:215992..218145 | TCONS_00013087-exon-sc0000162-1575043694:215992..218145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:215992..218145 + |
Blast
BLAST of TCONS_00013087 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.378e-49 Identity = 132/464 (28.45%), Postives = 239/464 (51.51%), Query Frame = -3
Query: 659 STVKVYKKRWLILLIFSINSMANTTLFTCITAINKIVCKYYHISPELTDWAGNIFSLVYVLIALPSAYCMDNFGIKTLLIIGSSLNGVCVCLHLAGTTQQGILFVMTGQIFSALSVGAVAQIPSRLSMVWFSEQEYAKAIGLSGIFNLIGQAIGFLQPSYMVPDSDNMDEI--YDGLLRMNISHVALLAVCLISAYLFFDEKPPLPPSYAKAVLDSSSITIDERVATPCFKQSLRMLLHDKNFMIFCLAFGIQAGLFNFFIICLNQMA--SHIANSKNIGWIGFTGNTATIIGVIVFASIVDKYKCYKKMMFFLFFMQILSWIAFSSVILYWKVKLLLFLTYATLCIFSIPFMAIGMSYSAELTYPISEGLSSGVSLMFGNGFGFLVIITMGRLIDANY------LFLTCAIVTGFYTTGFLLCFFIKENLKR--SNIELQKERVPLTPENT*MNRVVTFYNND 2014
S +KV ++RW ++L+FS SM N+ + +IN I +Y +S DW + L Y+ + LP A+ ++ FG++T+ + GS+LN + + L + GQ+ +++ + +PSR++ VWF E + A ++ N +G AIGFL P +VP+ ++ DE+ + ++ I VA L + L+ + F EKP PPS A+++ S ++T + + S+ L + NF++ + +G+ AG F LN+M + N G IG T A ++G ++ +D+ K YK+ ++ M ++ + ++ + + ++F+T T+ F ++ +G ++ ELTYP SEG+SSG+ + FG + I+ G++ID NY +FL F T G L FIK +L+R +N E + ++ E + ++V T + D
Sbjct: 76 SVIKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIMFYIIGGVATLLLILV--IIVFKEKPKYPPSRAQSL--SYALTSPDA----SYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFTLNLGHL-WVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIID-NYGTKPGNIFLCV-----FLTLGAALTAFIKADLRRQKANKETLENKLQEEEEESNTSKVPTAVSED 524
The following BLAST results are available for this feature:
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