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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000308 ID=TCONS_00000308|Name=TCONS_00000308|organism=Clytia hemisphaerica|type=transcript|length=1314bp
GTTCTTTTTTAGACTCAATGTCACTGATTGGCTGGGTTGGTACCTTCTTT
GTTTTAATTCGTTCAATATGATTATCTTCCTCTTGATTGGTGGGCTCTAA
CAATTGATCCATGACGTCATCTGGCTGTGTTTTCATTGGCTCTTCAAAGA
TTTGATGAAGGATTTCCTGGTCGTTGATTGGCTCGTTTTCTGAATCTtta
aatttgattggctgtctGTTGCctattgttttgattctttgGACAGCTTC
TTCAATTGGAGTACCATGCTCTTTGATCCAGTCAGTAATGCCATGTGCTA
TTTGTCGGTAGCGATTATCCTGGTTATCACGGTTCACGTTCGTTTGTGAA
TCTTCAGACGGCCGTGCGGTTGTTGCAGTAGTTTGAGCAGACCGGTGCTC
AGGTGTAATAAAACCCACACTGTGGCCTTCTTCTCTTAAATTACGTAATG
CTTCAAGAATTTGATCTTCGGGATTTTTCTGTTCCGTTATTTCGTCTAAA
CCTGGTATATCAGCTATATGAAGCTTTGGTTTTTCCGTAGTAGAGCTTGT
TACAATCTGCTGGTCATGAGGTTCCTTTGTCTCTGGATCAAACCTGTTAC
CACTTTTACTGTCTGCCGAATTGATAGATTCTCTTGGAAACGAAACCTCT
GTTTCATTTCCTTTCACTGTTACAGAAAGCTCATCAACTGGTGTTTTTAC
GACAGCAGTTCTGATTGGttctttttgatcatgtgacaACTCTACTAGCT
CAACCATTGGTCGTTGGGATTGATTCCGCTTGTCAGCGTCAACGTCCTTG
AATCTGTTTGTGATCAAGTCTTTCGATTTCAACGATTCTGTCATTTTAGA
TGTTGGTGATTGAGTCTCCGTCATCATATCTTTGATAACTGATTTAAGCC
TCGCCAAGATATCTTTAGGATTGTGTTTTAGATCCTCTCTTGAGTCTTTT
TGCTCCAATGTTGGTGGTACTTCTGGATCTCCAGACTGCAGAACTCTATT
GGCTACTGTAGATTCTCCCGGTACAATTACACCTTTAGGCTTTGACATTG
CACCAACCTTTCCTTCCCGGGATACATTGAGATGCCTAATTTTTACAATA
ATGGGGACATCATCAAGAACCTTGGATAGAGGCTCCGTTTGGCATTTCAG
TGGATCTACACAATTCACCGTGTAACAGAATCCTTTGAAAAACAGCGCAT
GCGTGCAATTGTTAAGTGCACAACACTTCGTGACACATCCATCAATGTTG
TGCTCTGATAAAATGGTTGTGAAAACACCTGCATATAACCCACCTTTGAA
TCGATGGTTAAGAG Run BLAST on NCBI protein sequence of TCONS_00000308-protein >TCONS_00000308-protein ID=TCONS_00000308-protein|Name=TCONS_00000308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
LNHRFKGGLYAGVFTTILSEHNIDGCVTKCCALNNCTHALFFKGFCYTVN
CVDPLKCQTEPLSKVLDDVPIIVKIRHLNVSREGKVGAMSKPKGVIVPGE
STVANRVLQSGDPEVPPTLEQKDSREDLKHNPKDILARLKSVIKDMMTET
QSPTSKMTESLKSKDLITNRFKDVDADKRNQSQRPMVELVELSHDQKEPI
RTAVVKTPVDELSVTVKGNETEVSFPRESINSADSKSGNRFDPETKEPHD
QQIVTSSTTEKPKLHIADIPGLDEITEQKNPEDQILEALRNLREEGHSVG
FITPEHRSAQTTATTARPSEDSQTNVNRDNQDNRYRQIAHGITDWIKEHG
TPIEEAVQRIKTIGNRQPIKFKDSENEPINDQEILHQIFEEPMKTQPDDV
MDQLLEPTNQEEDNHIERIKTKKVPTQPISDIESKKE Run BLAST on NCBI transcript from alignment at sc0000001:1030914..1032227 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000308 ID=TCONS_00000308|Name=TCONS_00000308|organism=Clytia hemisphaerica|type=transcript|length=1314bp|location=Sequence derived from alignment at sc0000001:1030914..1032227 (Clytia hemisphaerica)
CTCTTAACCATCGATTCAAAGGTGGGTTATATGCAGGTGTTTTCACAACC
ATTTTATCAGAGCACAACATTGATGGATGTGTCACGAAGTGTTGTGCACT
TAACAATTGCACGCATGCGCTGTTTTTCAAAGGATTCTGTTACACGGTGA
ATTGTGTAGATCCACTGAAATGCCAAACGGAGCCTCTATCCAAGGTTCTT
GATGATGTCCCCATTATTGTAAAAATTAGGCATCTCAATGTATCCCGGGA
AGGAAAGGTTGGTGCAATGTCAAAGCCTAAAGGTGTAATTGTACCGGGAG
AATCTACAGTAGCCAATAGAGTTCTGCAGTCTGGAGATCCAGAAGTACCA
CCAACATTGGAGCAAAAAGACTCAAGAGAGGATCTAAAACACAATCCTAA
AGATATCTTGGCGAGGCTTAAATCAGTTATCAAAGATATGATGACGGAGA
CTCAATCACCAACATCTAAAATGACAGAATCGTTGAAATCGAAAGACTTG
ATCACAAACAGATTCAAGGACGTTGACGCTGACAAGCGGAATCAATCCCA
ACGACCAATGGTTGAGCTAGTAGAGTtgtcacatgatcaaaaagaaCCAA
TCAGAACTGCTGTCGTAAAAACACCAGTTGATGAGCTTTCTGTAACAGTG
AAAGGAAATGAAACAGAGGTTTCGTTTCCAAGAGAATCTATCAATTCGGC
AGACAGTAAAAGTGGTAACAGGTTTGATCCAGAGACAAAGGAACCTCATG
ACCAGCAGATTGTAACAAGCTCTACTACGGAAAAACCAAAGCTTCATATA
GCTGATATACCAGGTTTAGACGAAATAACGGAACAGAAAAATCCCGAAGA
TCAAATTCTTGAAGCATTACGTAATTTAAGAGAAGAAGGCCACAGTGTGG
GTTTTATTACACCTGAGCACCGGTCTGCTCAAACTACTGCAACAACCGCA
CGGCCGTCTGAAGATTCACAAACGAACGTGAACCGTGATAACCAGGATAA
TCGCTACCGACAAATAGCACATGGCATTACTGACTGGATCAAAGAGCATG
GTACTCCAATTGAAGAAGCTGTCcaaagaatcaaaacaatagGCAACaga
cagccaatcaaatttaaAGATTCAGAAAACGAGCCAATCAACGACCAGGA
AATCCTTCATCAAATCTTTGAAGAGCCAATGAAAACACAGCCAGATGACG
TCATGGATCAATTGTTAGAGCCCACCAATCAAGAGGAAGATAATCATATT
GAACGAATTAAAACAAAGAAGGTACCAACCCAGCCAATCAGTGACATTGA
GTCTAAAAAAGAAC Coding sequence (CDS) from alignment at sc0000001:1030914..1032227 >TCONS_00000308 ID=TCONS_00000308|Name=TCONS_00000308|organism=Clytia hemisphaerica|type=CDS|length=1311bp|location=Sequence derived from alignment at sc0000001:1030914..1032227 (Clytia hemisphaerica)
CTTAACCATCGATTCAAAGGTGGGTTATATGCAGGTGTTTTCACAACCAT
TTTATCAGAGCACAACATTGATGGATGTGTCACGAAGTGTTGTGCACTTA
ACAATTGCACGCATGCGCTGTTTTTCAAAGGATTCTGTTACACGGTGAAT
TGTGTAGATCCACTGAAATGCCAAACGGAGCCTCTATCCAAGGTTCTTGA
TGATGTCCCCATTATTGTAAAAATTAGGCATCTCAATGTATCCCGGGAAG
GAAAGGTTGGTGCAATGTCAAAGCCTAAAGGTGTAATTGTACCGGGAGAA
TCTACAGTAGCCAATAGAGTTCTGCAGTCTGGAGATCCAGAAGTACCACC
AACATTGGAGCAAAAAGACTCAAGAGAGGATCTAAAACACAATCCTAAAG
ATATCTTGGCGAGGCTTAAATCAGTTATCAAAGATATGATGACGGAGACT
CAATCACCAACATCTAAAATGACAGAATCGTTGAAATCGAAAGACTTGAT
CACAAACAGATTCAAGGACGTTGACGCTGACAAGCGGAATCAATCCCAAC
GACCAATGGTTGAGCTAGTAGAGTtgtcacatgatcaaaaagaaCCAATC
AGAACTGCTGTCGTAAAAACACCAGTTGATGAGCTTTCTGTAACAGTGAA
AGGAAATGAAACAGAGGTTTCGTTTCCAAGAGAATCTATCAATTCGGCAG
ACAGTAAAAGTGGTAACAGGTTTGATCCAGAGACAAAGGAACCTCATGAC
CAGCAGATTGTAACAAGCTCTACTACGGAAAAACCAAAGCTTCATATAGC
TGATATACCAGGTTTAGACGAAATAACGGAACAGAAAAATCCCGAAGATC
AAATTCTTGAAGCATTACGTAATTTAAGAGAAGAAGGCCACAGTGTGGGT
TTTATTACACCTGAGCACCGGTCTGCTCAAACTACTGCAACAACCGCACG
GCCGTCTGAAGATTCACAAACGAACGTGAACCGTGATAACCAGGATAATC
GCTACCGACAAATAGCACATGGCATTACTGACTGGATCAAAGAGCATGGT
ACTCCAATTGAAGAAGCTGTCcaaagaatcaaaacaatagGCAACagaca
gccaatcaaatttaaAGATTCAGAAAACGAGCCAATCAACGACCAGGAAA
TCCTTCATCAAATCTTTGAAGAGCCAATGAAAACACAGCCAGATGACGTC
ATGGATCAATTGTTAGAGCCCACCAATCAAGAGGAAGATAATCATATTGA
ACGAATTAAAACAAAGAAGGTACCAACCCAGCCAATCAGTGACATTGAGT
CTAAAAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000308-exon-sc0000001-1491911889:1030914..1032227 | TCONS_00000308-exon-sc0000001-1491911889:1030914..1032227 | Clytia hemisphaerica | exon |
| TCONS_00000308-exon-sc0000001-1510915933:1030914..1032227 | TCONS_00000308-exon-sc0000001-1510915933:1030914..1032227 | Clytia hemisphaerica | exon |
| TCONS_00000308-exon-sc0000001-1575043694:1030914..1032227 | TCONS_00000308-exon-sc0000001-1575043694:1030914..1032227 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1030914..1032227 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023214 | HAD-like_dom |
Blast
The following BLAST results are available for this feature:
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