TCONS_00012917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012917
Unique NameTCONS_00012917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012917 ID=TCONS_00012917|Name=TCONS_00012917|organism=Clytia hemisphaerica|type=transcript|length=586bp
NNttttttatgacttctaatggtactttttctaacgagtttgattacttt
gatctcacacttatgtcttttttttttgcgtccttttccgtgattacttt
tatttatatttttaaagacaggtaagaaggcatattgatgtaactgcttg
GAGCTAAGCAACGTGTTAAATATCCTGTACACACATATATACTTTCtgca
atttcttagaaaaatggctgatcgtgggtgaaaatgacATCACACGGAAT
CGGTCTCTATATAAGGGCCACACGACACGTAGGCTAAGCATGCTATTAAA
AGGATAAATCCTCAACTcagacagacatacagacAGATAGATTTCCCTGC
TGCGCTGTGTGAAATACTTCATGTGGTTGTCTAGTACAGAATGCTGCTGT
GGCCTGTGCTGTTGTAGAAAACTGTCagacatttttgaattttatcatAT
TGATATTCTATACCGTGAAGTGGGGTAACTTGCATGAGCGGAAGGAAACT
TGCCATAGCATAGCctatcaaatgactgaccaaccaAACAAAGCAGGCAg
cagaaattcaaaacaaatagAGGGGGGTGCAcagtg
Run BLAST on NCBI

transcript from alignment at sc0000157:35817..36402

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012917 ID=TCONS_00012917|Name=TCONS_00012917|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0000157:35817..36402 (Clytia hemisphaerica)
cactgTGCACCCCCCTctatttgttttgaatttctgcTGCCTGCTTTGTT
tggttggtcagtcatttgatagGCTATGCTATGGCAAGTTTCCTTCCGCT
CATGCAAGTTACCCCACTTCACGGTATAGAATATCAATatgataaaattc
aaaaatgtctGACAGTTTTCTACAACAGCACAGGCCACAGCAGCATTCTG
TACTAGACAACCACATGAAGTATTTCACACAGCGCAGCAGGGAAATCTAT
CTgtctgtatgtctgtctgAGTTGAGGATTTATCCTTTTAATAGCATGCT
TAGCCTACGTGTCGTGTGGCCCTTATATAGAGACCGATTCCGTGTGATgt
cattttcacccacgatcagccatttttctaagaaattgcaGAAAGTATAT
ATGTGTGTACAGGATATTTAACACGTTGCTTAGCTCcaagcagttacatc
aatatgccttcttacctgtctttaaaaatataaataaaagtaatcacgga
aaaggacgcaaaaaaaaaagacataagtgtgagatcaaagtaatcaaact
cgttagaaaaagtaccattagaagtcataaaaaaNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007247XLOC_007247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012917-exon-sc0000157-1491911889:35817..36402TCONS_00012917-exon-sc0000157-1491911889:35817..36402Clytia hemisphaericaexon
TCONS_00012917-exon-sc0000157-1510915933:35817..36402TCONS_00012917-exon-sc0000157-1510915933:35817..36402Clytia hemisphaericaexon
TCONS_00012917-exon-sc0000157-1575043694:35817..36402TCONS_00012917-exon-sc0000157-1575043694:35817..36402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:35817..36402 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.372452	0.687267	1.22573	0.149388	3.24903	1.89861	1.16477	0.561316	0.361008	1.58941	1.27008	2.23213	0.207042	0.319103	0.0672093	0.234299	0.0732006	0.186977	0.616334	0.228817	0.884148	0.513821	0.116358	0	1.12814	1.04946	0.212014	0.447306	0.157761	0.154197
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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