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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012835 ID=TCONS_00012835|Name=TCONS_00012835|organism=Clytia hemisphaerica|type=transcript|length=669bpRun BLAST on NCBI transcript from alignment at sc0000156:313169..335526- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012835 ID=TCONS_00012835|Name=TCONS_00012835|organism=Clytia hemisphaerica|type=transcript|length=22358bp|location=Sequence derived from alignment at sc0000156:313169..335526- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012835 vs. Swiss-Prot (Human)
Match: CHRD1 (Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 9.510e-45 Identity = 82/187 (43.85%), Postives = 112/187 (59.89%), Query Frame = 1
Query: 91 LYCYNKGCGKEFNENENCQESCQHHPGAPVFHDAYKGWSCCKKRSTDFTEFLNIPGCSKGFHNXXXXXXXXXXXXXTPDISEVITDGLPK----LMKQKDPDTVLERPSDGTPSIKLNFNISQSLKTALQKLKEKLKQNSGEQGDNDDSIKVGAPCKHSGCEMKFLGEDRTHGECTYHPGYPVFHEG 639
L CYN+GCG+ F+ N ++C +HPG PVFHDA KGWSCCK+R+TDF++FL+I GC+KG HN EKP P K T + E + + PK +++ P ++RPS P L IS SLK AL KLK ++ +++D IK+G CK+ GC + G + C YH G P+FHEG
Sbjct: 3 LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKPPEPVKPEVKTTEKKE-LCELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCVYHSGVPIFHEG 188 The following BLAST results are available for this feature:
BLAST of TCONS_00012835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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