XLOC_006474 (gene) - C. hemisphaerica

Overview
NameXLOC_006474
Unique NameXLOC_006474
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000130:441857..452072+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006474 ID=XLOC_006474|Name=XLOC_006474|organism=Clytia hemisphaerica|type=gene|length=10216bp|location=Sequence derived from alignment at sc0000130:441857..452072+ (Clytia hemisphaerica)
ATGTCTATGGTTAGTGTGAGTGAGGTTCACTCCTTAGAAGGTCAATGTAT
CTCTGGATGCAATGCATCGTTAACTTACCAATGGTACCTCAAAGTCCTGT
CCGAAACTGGTTACTATGTCCAAATTGACGAATCAGTTCTGCTGACAATG
GTGACAACGCCGCTGTCTAGTTTTTTCTACAGCGCACGCGCGAACGCTTA
TCAAGGTGACACGTGGTATATGCTCTTTTTCAGGGCATATCGAAGTGAAC
ATGTCTTTGGAGAAACTTCAATGAAATTCTTCGTCAACAACGCCCCTGAA
AATGGTATGAttcttgtttttaacatttgttTGGTCAAGAGACCAAAAAG
CCcaatatttcaaatttctaaTTCCTAAGGAAAACAACAGAAATCTAATA
AACAAATAACAGGGGGTTTCAAAGGGGACCCGATTTCGCCATTCCGTCAA
ATTCTTATCCAATTTCGGtcgttgatttttttctaaattctgTTTCCCCG
GACAAAAGTAGCCTGATTTTCCGTCTTCGACAGTGAACCTAAATTCTGCA
AATCCGTATAAAATTTTGTAGAATTCCGCCATTTCGTAAGGAAAAAGAGC
AGATTCTGTTCGTCCGCCGACCTTGAACCCCCTCCCCAAAATCCATTTAA
CTGTGTGCATCAAGTTTGTTTCTTAGAGATCTCTGGTAAACAGAATTTCT
TTGATTAATGAATTGAGTAAGAAAGTCACAGTCGGTGTTATCTAAAACTT
TTCGTGGTAGGTTTTTGCAGCATCGCACCAAAAGTGGGCACCTTCATGGT
CGATTTCTTCAACCTATCGTGTCATGGTTGGCAAGATCTCCACAGTCCAT
TATCATATCGTTTTTACACGAAGATGGACAATGTACTGAGTGAGATTTAC
CAGGGATGGCTCTCTAACGTCTCCAAACAACTTGCGTTGAAAACTGGAGG
AGATATGTCGGATAGTGAAAATATGGAGCAAACCATTTATTTTGAGATCA
TAGACGGTGTAGGAGCAAGAACGATTGTCAACGATACAGTGCAGGTATGC
ACGTTTTTAATAAGAACTTCCATGACTTTTGaatccttcggatgttctta
gctcTTTGAGTTTCAGGCCAAATGCTCTTAAAATTGTCTCTGTTTTGTAA
GTAATTTTGttcaaattcttaaaaatttgttttggagcccgtaaagcctt
aaaatgtacttaacttgttcttaatattttggccattgaagccttatgtt
cttatatagtttgttcgtaTAAATGTTTGTATAACATCATCGTCCATAAC
ATCATGTTTAACTCTTTTCAGCTGTGTGGAAATCGTGCTAAACAAAGCAA
NGTATCGTTTTTACACGAAGATGGAAAATGTACTGAGTGAGATCTACCAG
GGATGGCTCTCTAACGTCTCCAAACAACTTGCGTTGAAAACCGGAGGAGA
TATGTCGGATAGTGAAAATATGGAGCAAaccatttattttgaaatcataG
ACGGTGTAGGAGCAAGAACGATTGTCAACGATACAGTGCAGGTAtatgct
tttttttataagaacgacccttcggatgttcttagctctttgagtttcaa
gccaaatgctcttaaaattgtcacttttttgtatttgtaggtagttttgt
tcaaattcttaaaaaaaattttggccatcgCCGAAGCCTTattgttctta
catagtttgttattataaaaaaaatgtgcatAGCATCGGTAGTACATAAC
TTTGTGTTTCCAGGACTCATTCGACACTCGCCAGATAAAGTAAAACTAAA
TACTAATCTAAATAATGTAGATATCCAGAAGTTTGTTCATACATTTTTTG
TAATATCTTTTAAttttctaacaaaattaattttgatatcCATTTTGAGA
ATTTCGTTTCAACAAAGATAGTTGCCATTCAAGATATCATAATCGCAAAC
CATATTTCTAATGTTTTGCATTTCATCATTAACTTCAACAGGTGAACTTG
CCACCGGACATCGACAGCGTGGTGAATGAAGTTTCGGACACTTTGACTGG
TGAAAATTCTCCTCTCGATGTTCTCTCACAAAGTGGTGATTATCTGGAGT
TATCGAGGCAAGTTCAAATCTACGGCTCATTGTTCAACGCACCACGTGAT
AAAGACCAAAACAATGATACGCAAAAGGGTGCTAGGGTCCAGGTAGGTGT
TGATTTTATTTAGTTGGCTTATACTAAGCATGGCTAAACATAAAATTTCA
TCCTTCttagctttttatttttttacgaGGTAAtgagcttttttttttaa
gtatcaGATATGGAAACTTTCCTTTTATACCATCAACGAAGAATCGAACT
ATTGTTTGTCAAACTATAACTTATTGAGAATAAAAACTTTACTTTAGCCA
GTGAGATTATAATGGTTTTTCGCTTTCctattttaccttttttagcTGCG
GTCATTATTATACGACAAAGTTTCCAGCATCAAAATGAAATCAACGAAAG
ACATCAACCTCATTGCTGGCCCATGTGGTGAAGTCTTACAAAACCCGGAC
GAAATTTCGGACAACACCCGCAAAAAAGTTCAGAGCAAGGTGGACGAAAT
GTTGGGCGTTTTGGAATCCGATGAACAAGCGCCAAGAAGTGTGGTTTTGG
GTGCGCTACCAGGTGTTCTAAGCATGACCAATAAAGTGGCGGAGAGCGCG
GCCAATTTGGTGTCCGTCGAACGTGAAGTGGATGGAAAAGTTGATGAAGT
ggtcaaaaaacaaaatttggatAACGTAAGTGACGTGATTATACAAAATT
TATACTCCACTCAAGTGGGAGCTGTATTTTTTTTACCTGGGCCAAAGACT
CAACAGTGAATTAATGTATTCGAGATGTAGCTAAAGTCACCATCTACTTT
TCTTggcgacggtaaaaacacctaAATACCATTGTCtttttaggtgagca
aaggtgATTTAGAgtcgtacatcaactatcgactttgttttgcgtcGACT
TTACTTACCGTTGGCCTCGATATCCCCCGATACATAAGCCCGCTAACCAA
TTTTCTGCCACCCGTTTAGAAATacattatgatatttttgcagTTGATTA
TCCATAACTCGAGCACGCGCTAAGATTTGTTTGACTTGAATATCTTAAGT
TATGTACTAAGGTTTGAaagacattgttaactgaagtgatcataaaactt
gttcgagttatagcgGTTCGACTTAAAGAGACAGCACTGTAAAATGAATA
ATCTACCCTTTCATATATAtggttttttctttataagcattgcgcttata
agcataactaggctcatatatggcaaaaatttaagcatatgctaaacaTT
ACCTTGAGCCTTCATACTCAGAGTTTGTTTCTTTTTgactggaattttac
ggattttctaaatttctctaaaattttgcttaggataagcatccctcaaa
gcatttttcagctttgtaaatctCTCGATCGAAGCATTTCCGAGCcagct
tttggatttttgtatgcttataaaaaaaaacatgtatatggTAGGTCATA
ATTCCTCATCTGTTTTTCAGTCACGACGTCAAGTAAAGAACGCCCGCCAA
CAAATGAACAAAACTTCAGAAATCCTCAAACACTACAGCACACCCGGCGC
TGGTACCATCGTCATAGAAACCAAAGATCAAGCATTgggattggccaaaa
tattatcCAATGAGAAAGAAGCTAGCTCAATGGCGGGTGGAGTTGGCCTT
ACTTTCAACCCGGGTTTATATCGGAGTGAACAAAGCGAAGATGATAATGA
TTTTGTAACTGTTAAGGTCGGTTCCCTTGAAATCTTGCTCCATTACtatt
attttttctcttttacaaGTCTGTTGTTTCATTGCTATGCCTATGCACGG
TTTAATCTTTTCAAACCCCAGTTCAATTCTTCCAAACGGCcatcttttct
ttttaagttcTACACGAtcattttcaattgttttaaaaTCGTCATTTATT
AAATATCTCTGCCAGGTTTTGAAATTCGCCAACCTTTATTCATTCGATCA
ATCATCGCTTCGTGTCAACTCTGCCGTGACCGGTATCAACTTTGAAAATT
CACAAACAAACGGTCCAATGGAAGTAAAGGATGCTTCAGAACCATTAAAA
ATCATCATCGAAAACCGGGAACCAAAGCAATCATCCTTTGCAAACAATTC
ATCAGAAAATTCTAACTCAACTGGTGATGGACTAACGGCGAACGTTTTCC
GAATGGAAGTCGGCGACAACGGCGAGCAATGGTCCTTCCACGCCGTTGAT
ATTCACAACGAATCATTCCGCGCCGTTATCAACCCACAAAACACAAGTCT
ACGATTGACTGTTTATATGCGGGAAAACAACCGGCCATCCCCGGACAAGT
ATCTCTTCCGCTGGATCGTACCGGACAGTTCATCATGTGATTGGTTGAAC
CGTACTGGTTTCGTGAACCGAACGGTTGATGTCCTCCGCGACCAACCTGA
AGATTACTCGTGTAGACTGCATCCGTTTTCTGTATTCATAAGTGACGAAC
TGGAGCTAGATGGAAAGTTCATTTTAGGTAAATTTCAGCAAGTAGCATAA
AAAATATTTGGGTACCATTAAAAGCTCTTACAAAGTcaaatataacaaaa
atatcAGATTCAGAGAAATTATTTAATGCAtggctttcaatttctctttt
ttatagGCGTTCATTACCTACCATCTATGCAACAAGAAGAAAAACAGCAA
AACACGTCGCCTGCTAAGAAACGTCGGCGGCGTCGTAACACGCCTTCCAA
AGATTCCGATGACTCCATAATAGACCTTGATCTTGTGGATGATGAATTTT
GCGTCACCATAAAACCGCCCCCTCCTACACCAGCGCCCACCCTTCCACCT
GGTGAATTCGTGACGTCAATCCCAGTCATCACCAACGACTCGGTTACGTA
CAATTTGACCATCACCAAAGCCAAATGTTTGTTTTGGGATGAGATGAATG
AAACATGGTCGTCAAATGGCTGCTTTGTAAGACCGTCTTTCACTTTCGca
cttttttcataattttaaaaagataaaaggtCCAAATAGAACgttaaact
tttgaaaatgtaatGTCGAACTCAACACCATATTGCAGTTATCAGTAAAA
GCCTCAAGGCAATACGCGTTGGTAGTGGATAAAATACAGCAGAGTCCCTC
TAAACTCTAAACCaatataactcgaatgtctccttaactcgaacaagttt
tcttgtcttttcagttaacaACGCCTTGCAATCCTTacttccataactcg
aaatttccataactcgaacaaatttgtgttccccatACGTGTTCGAGTTA
TCGAGACTTCGCTGTCTCGGTGCGTTGAGGTCAGGGTGAGAGGAGACGAA
AACTCATTACCATTTATCCATTCTTTCCAGGTTGATGCAGAAACCACTCC
AGAACGAACAGTGTGTTTGTGTACACATCTCACGGATTTCGGTGGTGACG
TCATGGTAGCGCCCAATCCCATCGACATGAACGCTGTTTTTGCGGGCTTG
AATAATTTAGGAGATAATTTGGGTGTTTTGATGGTCATCATCTCACTTTT
TCTTATCTACATCATTTTGGGAGTTTGGGTTAGCAAGAAAGATCGCAAAG
ATGAAATTGAGGTTATTACGGTTATTGAGTTTGGACCAATAAGTGAAATG
CTTTTATTCTGAAAATTCTGATTCTTCCTTTAATCTTTCTTTTTGTTGTG
TCAAATCGCAATTCGAAACTGAAAAGCAATAAACAAACTCTCGACAAACC
TCCAGGctaaatgttttgttttcatattctttaagtttatatcaactttt
ttttttctttttttttatatatgattTGAGAAACTACATTACACTTACGA
ACATATACtacttacaaaaacaaacacagaaaaaataacTTCTCTTTTTC
ACCAGAGACAAATGGTGCATGTTGATTGCACCAACGGGCGACCCATCAAA
CAAACATTGATCATTACCGTAATTACGGGCGCTGGAAATGGATCTGGAAC
TACCGCCAGAGTGTATGGTTTGCTTAGAGGTACCTTGATGTTAAATTTTC
TACTTCACTGTTTTCAATTCTACCCCACAATCTATCTTGATCATGTGAAG
TCTATTGTATTCAGCCATGAATTTGCTATTCACTCTATCCTtggcaaacg
atagcccttgacccaataagcatatgatataatatcaggggtactcaaag
caaatttttcaaatgagaatgctaagcaaccccacccctgacccgaaaat
tggagttgcttataaaaaagtaattaatTATTATTCAAGCGAAGTATGAA
ACTTTTGACCAACTGCTTCAGCTGAGGTAATTACAGATTTTTGACCCGAA
AACATATCAAAGAGTATCTCTCAAAACGTTTATATTTCTGTCACATCACA
GGTAGCAAAGGTGAAATGGTGATCCCGTTAAACACGTCAGAGAACACGCT
TTTCAAAACACGATCCACGGTCATTTTGAAAATCACCTTATCACGGGAGA
TCGGTGAAGTGGATTTCTTTCGAGTGTTTCACGATAATGGAGGTGAATAT
TCATtcactcattcattcattcattcattcattcattcattcatttagtC
ATTCATCATAGGGTCCTCCAGGgttcaggtacccccaaaaaatttaggta
cccccaatcattttggtacccccaaaatttttagaattttgaagtaaacc
cccaccccggtggggtggaggtcctataaattaacctttgtccgttcgtt
cgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNctataaaccctcgaatgtgacggagcc
cgattttcgaaaaaaaaatttttgggcaaatttgggccaaaaaacgggtt
ttttggactttatgaaaaattggatcgttaactttttcagattttttgca
tgaaagtagggtaccatcataggtaaaagatggctcaagcagattttttc
aaaaaaaattttttggctcaaaaaacgcatNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNttggcgtgtttttatagaaaaactggccaaattcgatatttattt
ataagcacattatcaattacctaggttttagcttttctcgaggttgcctc
tttgattctttatgattttttgcacaaagatgcataactataaaccctca
aatgtgacggagcctgactttcaaaaaaaaaaaatttggggcaaatttgg
gtcaaaaaacggctaaagaacgggttttttggactttgtgaaaaattgaa
tcattaactttttctgattttttgcatgaaagtagggtaccatctaaggt
aaaagatggctcaagtagattttttcaaaaaaattttgttggctcaaaaa
acgcatgtttatctataagagtcaattgataagcatacatcaatgttctt
agccaaattacttaattttttgatgagatagatgtttttttgctcccaga
gtcttgaatatgaaagaatatttcaagagcatgaaattttggtttttaaa
cgctttttttataagaaacaaacgactaattttaatagatcgtcactatt
tgtgttctgaatgattgtttaatggtcacgcttacgtagatatcaattat
atacgtgttaaatgcataaccaggtaggtccataaaaatcacttgttaat
ttttttattgttagaAATACAAAATGGGGAATTTTtgctcttttgtcatt
cctgggAAAATACTTCCATGGCGGCCAGCacttctttttcaacaaattca
aggGTGTCATTTTTTACTATAATTTTCCAGGGTTTTTTTTATATACCACA
AACTTTCCAGGGTTTCTAGGGTTTTTAGTTGATCTTTGctagttttcaaa
gatttcaaggaATTCTGTCGACAAAAggagaaaggttgaattttcaattt
ttgtgtaaAGGAGGACCCTTAAATTGgctgataattgataattttgcAAC
CACCCATTCTATCACCCAGACCTGCCAATCTCATATAATTCCAGTGGCAC
TTAGCGGGTTAAAAGGTAAACCCCCTAAGAATGAGTGTGGAATATCCCCT
TGAGTCTAAGGGGTTCCAAAAGtatgttttcttgtttttaagtCACTGCG
ATGTTTGTATCCCACGCAATGGGAAAAATTTCGTAATTCTGAAagttaaa
atggctgaaaatggccaaaaaatttggcatttcaagggtttcaaggaccC
CCAAAACAATATTGacttttcaagggtgtttcaagggtttcaaggaattC
AAGGTGATGGCtttatacaaaaacaacagcccccgcccccactaatgaaa
atgcaggtacccccaaacatatcaggtaccccctaaatttaggaatactt
ccaggtacctggcttttttttaggtacccccaaatcaCTGGGGGGGTGGA
TCCTAtgtcattcattcattcgtttatgcattcattcattcattccagCG
CCCGTTTGCTGATCTTCATTCTTTACCCAAAACGAGATAAAGCTGATAAA
AATTCGTTTTGCTTGCTTCGCTCTCGAAAAATTTCAAGACACATTTTTTC
AGTCAGTGTCAAAACTTGCCTCCCCAGTCAACCCTAATTTCGGTCGACCT
ACCACGATACTGCAATATGTTGGGTCTGATCGAAATTAGGGTTGACTGGA
CTTATTTGGACTCCAGTAGTTGTATTCAGAAATAGAAAGAAGTGATCACA
ACCGCCCTTAATGTCTTTCTTTCATCATTTTTATATTTCAGGTCGAAGTC
CATCATGGTATTTACGTTCCATCTTGGTAGTGGACACTGAAACGCGTAAC
GAGTTCCCCTTCGTCTGCGACACTTGGCTCTCAGTTGAATCGGTGGACGG
ACAGATTGACCGCACGCTCGTCGTGGCGAccgaaaaagatttgaaaagtt
TCCATCTTATTTTCGCATCCAAAGTTTCCAAAGGCCTCTTGGATGGTCAT
ATCTGGTTCTCTATCTTTCTGCGACCTGCCCAAAGTTCTTTTACACGTTT
CCGCCGCCTCACCGCCTGCCTCGCTCTCATCTTCCTTACTATGCTCACCA
ACGCAATGTTCTTTGGGGCGAGTGACGCCCCTGGTGGGCGGAAAATTGTC
TATCTAGGGAATTTCAAAGTCAATCTGACGGGCGTGATGATCGGTATACA
GTCTAGTATTATCATCATCCCGCCTAGTGTGATTATCGTCGAGATTTTTC
GTCGTTTGAAACCAAAGAAGAAGCAAAAGGTCAAGGAGATGGAGGTGGTC
GAAATTGCCGGTGACGAAAGTTACcttgataaagaagaaaatgaggATGA
GATGAATAATTCGATGGTTTTCctcaaaaatgatcaaaacacaaagaaga
aggagaagaaaaaagagagtaaacCTTTCATGCTACCCCATGGTTTTAAA
TATGTGgcatatttcgttgtttttgcttctgtgagTAGCTCTGCAACCGT
ATGTTTCTTTTACTCCATGATGTGGGGGCCGCGTCGTTCGAACGAATGGC
TTGTCTCGATGTTCACTGGTTTCTTTCAATCTGTCATTGTTATTCAACCC
GTCAAAGCCGTCTTCGTCGCCGTTCTTTTTGCCGCCATTTTGCGAAAACC
CGTCAAACACGACGTCACTCTGCTTGATGATGACGATAAGATAGAGGAGG
AGAGAAATGAACAGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011552TCONS_00011552Clytia hemisphaericatranscript
TCONS_00011553TCONS_00011553Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00011552-proteinTCONS_00011552-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:441857..452072 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.5	0.47	0.33	0.27	0.13	0.18	0.24	0.37	0.15	0.52	0.52	0.52	0.31	0.38	0.34	0.55	0.77	0.51	0.64	0.3	1.49	1.17	0.96	1.79	4.35	6.08	0.27	0.15	0.16	0.13