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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012656 ID=TCONS_00012656|Name=TCONS_00012656|organism=Clytia hemisphaerica|type=transcript|length=1088bp
NNCGGGGAGATCAAAATGATTATGAAGATGTTGCTGAGAAACAATGTCAG
TCTTATGCCGTTTATTGCAGGACTTATAgtttgcaaatctagccctaaAT
TGAGTTATACAGCTACCGACATACTGAATCCCACAAGTTTTGCAAGTAAA
AAGATAGACAACATTAGTTGAGCTGCTATTCAGATGAACTCCTCTAATGT
CATAGGTCTTATTCTTGTTATCTGCAAAACCTGAGGTTTTCTTGACAAAA
GGACACATTTGACAGCGGTTTCCGTCACATCCTCCACTTGAGCCTCGGTT
GCCGTCTGGAGAAATTTTTGCACGAACTAAAAGATCTTTGAGGTTTTTAC
CTCGACGAAACCCAACTATGGGGACATCACGGAAAACCTTTTTGTGATCT
TTATCACCTGTCAACATGACGTGTAGTTTCCTAAGCAAAACTCCAAGGTT
CTGGACCCAGGGTGAAACGTGACAGTAAGTGTTAGTTTATATGTTTTCTC
ACGTTTCTCCTGACGTAAAAGATCCTTGCGCTTTTGTCTACGTGCATCCA
GAACCTTAGTTTTAACAAACTTCTGATCATACCCACGTTTAATCGGCCAT
GTCTCCAGTTCGTTGCAACGTAAGTCGAATTCATGGGGCTTCATGCGATT
AAGTCTAAGAGCCTGACTGTATGGAATCGAAGTCTTGGAGTGAATGACAT
GACAGGACGAAGCATCCAGATACTGGTGAGTATCTGTTGGCTTCACGTAG
AGATCAGTAGCTAGTTTATCCCCCTTGCGATAAACCCTTACGTCCAAAAC
ATTGATGGATGTATTAGAGTATTCGAAAGTAAATAAACACTCTTATGGGT
TTCATCGCTATTTAAGTGGTCAAAGAAAAGTTTCAGAGATTCTTCATCGT
GCTGCCAGAGAAAGAAGATGTCATCGATATATCTCCACCAGACTAAAGGT
TTATGATTGTGTGGTGCCGAACCAAGAATCTTTTCTTCAAGATCACTCAT
GAAGAGAATGGCATAGTTTGGTGCCATTTTAGTACCAATTTTTAGTTTAT
ACTATGCTAAAGACTAAGTATACAAAATTACCTCCGAG Run BLAST on NCBI protein sequence of TCONS_00012656-protein >TCONS_00012656-protein ID=TCONS_00012656-protein|Name=TCONS_00012656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MLTGDKDHKKVFRDVPIVGFRRGKNLKDLLVRAKISPDGNRGSSGGCDGN
RCQMCPFVKKTSGFADNKNKTYDIRGVHLNSSSTNVVYLFTCKTCGIQYV
GSCITQFRARFANYKSCNKRHKTDIVSQQHLHNHFDLPX Run BLAST on NCBI transcript from alignment at sc0000146:6143..7230 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012656 ID=TCONS_00012656|Name=TCONS_00012656|organism=Clytia hemisphaerica|type=transcript|length=1088bp|location=Sequence derived from alignment at sc0000146:6143..7230 (Clytia hemisphaerica)
CTCGGAGGTAATTTTGTATACTTAGTCTTTAGCATAGTATAAACTAAAAA
TTGGTACTAAAATGGCACCAAACTATGCCATTCTCTTCATGAGTGATCTT
GAAGAAAAGATTCTTGGTTCGGCACCACACAATCATAAACCTTTAGTCTG
GTGGAGATATATCGATGACATCTTCTTTCTCTGGCAGCACGATGAAGAAT
CTCTGAAACTTTTCTTTGACCACTTAAATAGCGATGAAACCCATAAGAGT
GTTTATTTACTTTCGAATACTCTAATACATCCATCAATGTTTTGGACGTA
AGGGTTTATCGCAAGGGGGATAAACTAGCTACTGATCTCTACGTGAAGCC
AACAGATACTCACCAGTATCTGGATGCTTCGTCCTGTCATGTCATTCACT
CCAAGACTTCGATTCCATACAGTCAGGCTCTTAGACTTAATCGCATGAAG
CCCCATGAATTCGACTTACGTTGCAACGAACTGGAGACATGGCCGATTAA
ACGTGGGTATGATCAGAAGTTTGTTAAAACTAAGGTTCTGGATGCACGTA
GACAAAAGCGCAAGGATCTTTTACGTCAGGAGAAACGTGAGAAAACATAT
AAACTAACACTTACTGTCACGTTTCACCCTGGGTCCAGAACCTTGGAGTT
TTGCTTAGGAAACTACACGTCATGTTGACAGGTGATAAAGATCACAAAAA
GGTTTTCCGTGATGTCCCCATAGTTGGGTTTCGTCGAGGTAAAAACCTCA
AAGATCTTTTAGTTCGTGCAAAAATTTCTCCAGACGGCAACCGAGGCTCA
AGTGGAGGATGTGACGGAAACCGCTGTCAAATGTGTCCTTTTGTCAAGAA
AACCTCAGGTTTTGCAGATAACAAGAATAAGACCTATGACATTAGAGGAG
TTCATCTGAATAGCAGCTCAACTAATGTTGTCTATCTTTTTACTTGCAAA
ACTTGTGGGATTCAGTATGTCGGTAGCTGTATAACTCAATttagggctag
atttgcaaacTATAAGTCCTGCAATAAACGGCATAAGACTGACATTGTTT
CTCAGCAACATCTTCATAATCATTTTGATCTCCCCGNN Coding sequence (CDS) from alignment at sc0000146:6143..7230 >TCONS_00012656 ID=TCONS_00012656|Name=TCONS_00012656|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at sc0000146:6143..7230 (Clytia hemisphaerica)
ATGTTGACAGGTGATAAAGATCACAAAAAGGTTTTCCGTGATGTCCCCAT
AGTTGGGTTTCGTCGAGGTAAAAACCTCAAAGATCTTTTAGTTCGTGCAA
AAATTTCTCCAGACGGCAACCGAGGCTCAAGTGGAGGATGTGACGGAAAC
CGCTGTCAAATGTGTCCTTTTGTCAAGAAAACCTCAGGTTTTGCAGATAA
CAAGAATAAGACCTATGACATTAGAGGAGTTCATCTGAATAGCAGCTCAA
CTAATGTTGTCTATCTTTTTACTTGCAAAACTTGTGGGATTCAGTATGTC
GGTAGCTGTATAACTCAATttagggctagatttgcaaacTATAAGTCCTG
CAATAAACGGCATAAGACTGACATTGTTTCTCAGCAACATCTTCATAATC
ATTTTGATCTCCCCGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012656-exon-sc0000146-1491911889:6143..7230 | TCONS_00012656-exon-sc0000146-1491911889:6143..7230 | Clytia hemisphaerica | exon |
| TCONS_00012656-exon-sc0000146-1510915933:6143..7230 | TCONS_00012656-exon-sc0000146-1510915933:6143..7230 | Clytia hemisphaerica | exon |
| TCONS_00012656-exon-sc0000146-1575043694:6143..7230 | TCONS_00012656-exon-sc0000146-1575043694:6143..7230 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000146 | supercontig | sc0000146:6143..7230 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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