TCONS_00012542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012542
Unique NameTCONS_00012542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1681

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012542 ID=TCONS_00012542|Name=TCONS_00012542|organism=Clytia hemisphaerica|type=transcript|length=1681bp
TTGCACCAATTCTTTTTACCCTTGTTGAGTCATCAAAGTTGAAAACATAA
AGCAATTCGGTTTATTCAGATAGGAATTATTTTTGTTGTAAAACAACTGC
AACATCGAGACATACCTCTGCGGAGACTCAGACTGCAAAGATTGGATTAA
ATAAAGAAAGTATTGCAATTCAAGGGggatgaataattttttttgatata
aTGTTCAAGTTATCTGTGGTTTTTTGCTTTATACAATTAATCTCCTGGAG
AGACGAGCTGTCAATTGGTTTATCGAAACATGTTGAGTTTGTGGGTTTTT
CTTGCATATTCTGTTATCAATGGTCGGTCAATGGCTCAAAATCTACAGCT
TCCCGCGTGATTTTAATAGACTTCCTCGTCGAATTTTCTTCAAACTTCAT
AGAAATAACCCTAGAACCCCTAGAATCTTCATAGTACTCCTAGAACATAC
ACATATATCATTTTCAGAAATCTAAAGAGTTTTTAATAATTCTACTAAAT
CATTTGCAAAATGTGAAGAGTCAATGCCTTTATAGGAGGGGAATTGGTTG
ATATCAATCAAGGCATAATTCCCAGTATGCTCTTCcaccaaaatatcaaa
accaTACAAATTCAATCCTGAATATTTCTTGATTCTTAAAACAATCTCTC
CAATGGTTTCCTTATCTAAGAGAAAACTCTTTTGGTCTGAAGACAACCAT
GTTTGGTGGTTCGGATCTTCGCTGTGTAAAACTTTATTAAAACATTGACC
CAATTTAGAGATATTAAAAGAATCGAATTCAATATTGATTTCAGGTTGCT
TACAATTGATTTCCAATTCCAAGGAATCTTCAACAACCAGATTCTTCACA
GATGGTCTTTCACATATATGGTACttgagGTTTTAGGAGATCCTGcacca
atcaaaacaaaaacttgtAATTGTCGAATAAAAATTGATTGCCCACTCAA
CGGAAAATGCCTCCAAAAAAGCGTTATTTACAAATTCCACGTAAAAGCAA
ACCCAGAAGACGACGGTGTTCATTATATTGGTCTCACTGAGAGCACTTTC
AAAAATCGCTGGTACAACTATCGCCATGATTTTAGAAATGAGTCCAAAGA
AAAATCTACTGAACTATCTAAACACGTTTGGAGTTTGAAAAAAGCCGGTT
CAACACCAACATTATCTTGGGATTATTGACCACGCCCCAGCGTACCGGAA
TGGCagcaaaaattataatttatgCTTGACTAAAAAGTATCATATAATAA
CTTCAAACTTAAAGTTGCTTAACAAAAGAACTgaatacacaacacgtctt
ttgcatctttctcacagcttgaaacgtcattacgacttataattagcaat
taagtgaaagaatctgactctcacaggaaagtcttttgggaattgaatga
gtgattttcgataagaaatgcaataaaactgcttcgaaaaatcatttaat
gagggtaggagagtgaacaataatattattactgcggacatagctagtac
acgagaaatcggcaaaaatctgttacttgtatatccagtgtataataaat
ccttgttCTAACTAAAGGATATAAATTTTGGCtaaatataaaagttattt
gACAATACAGAAAGGACTTTAAACAGCTATGGATAAGATACAATATTCCA
GTTACAAAGGACacaaaaaggttacaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00012542-protein

>TCONS_00012542-protein ID=TCONS_00012542-protein|Name=TCONS_00012542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MVLEVLGDPAPIKTKTCNCRIKIDCPLNGKCLQKSVIYKFHVKANPEDDG
VHYIGLTESTFKNRWYNYRHDFRNESKEKSTELSKHVWSLKKAGSTPTLS
WDY
Run BLAST on NCBI

transcript from alignment at sc0000145:515010..518185+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012542 ID=TCONS_00012542|Name=TCONS_00012542|organism=Clytia hemisphaerica|type=transcript|length=3176bp|location=Sequence derived from alignment at sc0000145:515010..518185+ (Clytia hemisphaerica)
TTGCACCAATTCTTTTTACCCTTGTTGAGTCATCAAAGTTGAAAACATAA AGCAATTCGGTTTATTCAGATAGGAATTATTTTTGTTGTAAAACAACTGC AACATCGAGACATACCTCTGCGGAGACTCAGACTGCAAAGATTGGATTAA ATAAAGAAAGTATTGCAATTCAAGGGggatgaataattttttttgatata aTGTTCAAGTTATCTGTGGTTTTTTGCTTTATACAATTAATCTCCTGGAG AGACGAGCTGTCAATTGGTTTATCGAAACATGTTGAGTTTGTGGGTTTTT CTTGCATATTCTGTTATCAATGGTCGGTCAATGGCTCAAAATCTACAGCT TCCCGCGTGATTTTAATAGACTTCCTCGTCGAATTTTCTTCAAACTTCAT AGAAATAACCCTAGAACCCCTAGAATCTTCATAGTACTCCTAGAACATAC ACATATATCATTTTCAGAAATCTAAAGAGTTTTTAATAATTCTACTAAAT CATTTGCAAAATGTGAAGAGTCAATGCCTTTATAGGAGGGGAATTGGTTG ATATCAATCAAGGCATAATTCCCAGTATGCTCTTCcaccaaaatatcaaa accaTACAAATTCAATCCTGAATATTTCTTGATTCTTAAAACAATCTCTC CAATGGTTTCCTTATCTAAGAGAAAACTCTTTTGGTCTGAAGACAACCAT GTTTGGTGGTTCGGATCTTCGCTGTGTAAAACTTTATTAAAACATTGACC CAATTTAGAGATATTAAAAGAATCGAATTCAATATTGATTTCAGGTTGCT TACAATTGATTTCCAATTCCAAGGAATCTTCAACAACCAGATTCTTCACA GATGGTCTTTCACATATATGGTACttgaggtaagagtgtttttttctgaa attttgagtctggatacccaggctattGATTCTTCTCCCCTTATTAAAAT CCATCACCTTAAATTGATAATTTGCTActaatttttcaatatttctatca caacataatatttttaaattttattttacactTTCTACTCGCAGAAAAGC AACATAAATTTATATTATATCACGAGGGTTAtaatcattgagtttcaagc ccgaagggctagaggtcaatctctaacctttctcaggcaagaaaaattga agccttaaaatatgcgccgtatttttgatgaNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNttttagtttcaatctgtcatttgtgtaaaa accaggcgggtcgctcaaggccgcgcaactttggtaggatttgttggctt caaatcctaacaaagagattgacctctagcccttcgggcttgaaactcaa tggttataaTATCCAATGCGATTCATATAATTATAATATCTTCTTTGTTC TACATACTTGATGACTGAGCACCTCATAAgttttatttctcaaaaaaatt gataaccCTTTTATACTACTTTATACGATCAAATAACCCAGTTTCGaaat tttatgatatatttATGAAAAGGCACCTGCTGGACCTCCCTAATacgttg ttttgaaaattatccCTTAAAATATGATATTTGAAACCTGACATTATTTT GTgatattttggaaaatcttttgatagaaaaaaggttttttgggacAGAA ATGAGGCACTAGAAACTTTATATTCCCATGTCTGAATGATTCAggctttc aatttctcttgTTATTGACagatcttaaattttcagatataggcTACCTA TATTTtctgtaggttttaaggggtatccactggtagggAAAAAAATTGGT GATGTGTGATTTGGGATTTTTTGAAGAGCAAATTAAGGCAAATTTAGGTG ATTAACGTGATGAGGCCCTCATGAGGGTAAATAGTTTGGCGGTATATTGA TTAAAATGATGAATATATTCACAAATACAAAAAGGTTATAAAATTCCACt caaaaaggttacaaaattttttacaaaaagctTAATATATAGTATATGAC TCTTTAAGAGAAGTAGTTTTGATTCAGAAAATATACAGCTCTGGAATAAT GGTTATATATCAAATTAAGTTACAGGATAAATAAAGGATCGTAAAGCGTT TCTTACAAATCGTTTCTTTCCAAAAGCTGACAAATTCCACAAAATCCTAA ACAGAAACACCCTGAAAGTCAGCTACAGTTGCTCACCCAACATATCGTCT ATCATCTCTTCTCACAATAAAAAGGTTTTAGGAGATCCTGcaccaatcaa aacaaaaacttgtAATTGTCGAATAAAAATTGATTGCCCACTCAACGGAA AATGCCTCCAAAAAAGCGTTATTTACAAATTCCACGTAAAAGCAAACCCA GAAGACGACGGTGTTCATTATATTGGTCTCACTGAGAGCACTTTCAAAAA TCGCTGGTACAACTATCGCCATGATTTTAGAAATGAGTCCAAAGAAAAAT CTACTGAACTATCTAAACACGTTTGGAGTTTGAAAAAAGCCGGTTCAACA CCAACATTATCTTGGGATTATTGACCACGCCCCAGCGTACCGGAATGGCa gcaaaaattataatttatgCTTGACTAAAAAGTATCATATAATAACTTCA AACTTAAAGTTGCTTAACAAAAGAACTgaatacacaacacgtcttttgca tctttctcacagcttgaaacgtcattacgacttataattagcaattaagt gaaagaatctgactctcacaggaaagtcttttgggaattgaatgagtgat tttcgataagaaatgcaataaaactgcttcgaaaaatcatttaatgaggg taggagagtgaacaataatattattactgcggacatagctagtacacgag aaatcggcaaaaatctgttacttgtatatccagtgtataataaatccttg ttCTAACTAAAGGATATAAATTTTGGCtaaatataaaagttatttgACAA TACAGAAAGGACTTTAAACAGCTATGGATAAGATACAATATTCCAGTTAC AAAGGACacaaaaaggttacaaaaat

Coding sequence (CDS) from alignment at sc0000145:515010..518185+

>TCONS_00012542 ID=TCONS_00012542|Name=TCONS_00012542|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000145:515010..518185+ (Clytia hemisphaerica)
ATGGTACttgagGTTTTAGGAGATCCTGcaccaatcaaaacaaaaacttg
tAATTGTCGAATAAAAATTGATTGCCCACTCAACGGAAAATGCCTCCAAA
AAAGCGTTATTTACAAATTCCACGTAAAAGCAAACCCAGAAGACGACGGT
GTTCATTATATTGGTCTCACTGAGAGCACTTTCAAAAATCGCTGGTACAA
CTATCGCCATGATTTTAGAAATGAGTCCAAAGAAAAATCTACTGAACTAT
CTAAACACGTTTGGAGTTTGAAAAAAGCCGGTTCAACACCAACATTATCT
TGGGATTATTGAATGGTACttgagGTTTTAGGAGATCCTGcaccaatcaa
aacaaaaacttgtAATTGTCGAATAAAAATTGATTGCCCACTCAACGGAA
AATGCCTCCAAAAAAGCGTTATTTACAAATTCCACGTAAAAGCAAACCCA
GAAGACGACGGTGTTCATTATATTGGTCTCACTGAGAGCACTTTCAAAAA
TCGCTGGTACAACTATCGCCATGATTTTAGAAATGAGTCCAAAGAAAAAT
CTACTGAACTATCTAAACACGTTTGGAGTTTGAAAAAAGCCGGTTCAACA
CCAACATTATCTTGGGATTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007037XLOC_007037Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012542-proteinTCONS_00012542-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012542-exon-sc0000145-1491911889:515010..515888TCONS_00012542-exon-sc0000145-1491911889:515010..515888Clytia hemisphaericaexon
TCONS_00012542-exon-sc0000145-1510915933:515010..515888TCONS_00012542-exon-sc0000145-1510915933:515010..515888Clytia hemisphaericaexon
TCONS_00012542-exon-sc0000145-1575043694:515010..515888TCONS_00012542-exon-sc0000145-1575043694:515010..515888Clytia hemisphaericaexon
TCONS_00012542-exon-sc0000145-1491911889:517384..518185TCONS_00012542-exon-sc0000145-1491911889:517384..518185Clytia hemisphaericaexon
TCONS_00012542-exon-sc0000145-1510915933:517384..518185TCONS_00012542-exon-sc0000145-1510915933:517384..518185Clytia hemisphaericaexon
TCONS_00012542-exon-sc0000145-1575043694:517384..518185TCONS_00012542-exon-sc0000145-1575043694:517384..518185Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:515010..518185 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0319543 0 0.0907055 0 0 0 0 0 0.0267351 0.0320751 0.0343648 0 0.0252082 0.111206 0 0.0723172 0.985487 0.560663 0 0.131963 1.87098 1.14116 0.640713 0.745022 0.168933 0.123933 0.788631 2.31091 0 0.0331467
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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