TCONS_00012533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012533
Unique NameTCONS_00012533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012533 ID=TCONS_00012533|Name=TCONS_00012533|organism=Clytia hemisphaerica|type=transcript|length=1328bp
GGGCTAAATAATAAATATTGATTTAGAAAGACATCAATATTAAAAGATGG
CTAGAATAAGTTATGCAACAGATTTTGAGAAATCAGTTCTGGTGAATAAT
TTTGAGAAGCGAGGATGGAATCATGTCAATCCTGAAGATGAGTGGCATTT
TTATTGgGCAAGTGTCGGTACTGTAAGACAAATTTTTAATATTGAGAATG
GCTACAGACTCAATGAAAATCAGgttgtcaatcattttccaaatcATTAC
GAGTTGACAAGGAAAGATTCCATGTTGAAGAATTTGAAAAGATATCGCAA
AGAATTAGAAAAAGAAGGAAACCCTTTTGCTGAGAAAGATGACAATGGAA
AGTACACTTATCTTGACTTCGTTCCAACCACCTTTCTTTTACCTGGTGAT
TACAACCTGTTCGTGGAAGAATTTCGGAAAAATCCTTCATCAACATGGAT
TATGAAACCTGCAGCCCGATcaCAAGGCGTCGGAATCTTTCTAATCAACC
GCATTTCACAGATTAAGAAGTGGTCAAAAGATGGAAAGTCTGGAAATGTC
CCTCACAGCAGTAAAGACTCGTATGTCATTTCACGGTATATCGATAACCC
TTTATTGATCGGTGGCAAGAAGTTCGATTTGAGATTATACGTGCTGGTGA
CATCTTACAGACCACTCAAATGTTACATGTATAAACTTGGATTCTGTCGT
TTTTGCACGGTGAAATACAATGCAGATGTTAACGAATTGGATAACATGTT
TGTTCATTTGACCAACGTCTCCATACAAAAACATGGGgATGAATACAATT
CGACACACGGTGGAAAATGGACCATTGAAAATTTACGATTGTATCTAGAA
GGGACTAGAGGTCACGAGgtTACCAATAAATTGTTTGATGACATTCATTG
GTTAATTGTGCATtctctaaagtctgtctcaGGTGTCATGGTAAATGACC
GGCACTGCTACGAAGTTTATGGGTATGACATTATCATTGATGATTTTCTG
AAACCTTGGATTATTGAGGTTAACGCTTCACCGTCGTTGTCAGCGACCAC
CTCAGCTGATCGAATCATGAAATTCTCTTTggttaatgacgtcatcaata
ttGTCGTTCCTCCAGGTGAATTTCCTGATGTTAGGAGGGAGAAGATTCCA
AAGAAAGAACACCTTGGTAACTTCGATGTCCTACTGGACGAAGAAGTAGC
TGGTCTCGACGGTTCAGGCTCCGATAGGAGTGGTAAAGGCAAGAGCAAGC
TGACTAACAAGGACAACAGAATGCAACGCGCTACTTGGAAGTGAGAAAGA
TTTCAACTCAAAGAGGAATGAAGAGATC
Run BLAST on NCBI

transcript from alignment at sc0000145:463075..478565+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012533 ID=TCONS_00012533|Name=TCONS_00012533|organism=Clytia hemisphaerica|type=transcript|length=15491bp|location=Sequence derived from alignment at sc0000145:463075..478565+ (Clytia hemisphaerica)
GGGCTAAATAATAAATATTGATTTAGAAAGACATCAATATTAAAAGATGG
CTAGAATAAGTTATGCAACAGATTTTGAGAAATCAGTTCTGGTGAATAAT
TTTGAGAAGCGAGGATGGAATCATGTCAATCCTGAAGATGAGTGGCATTT
TTATTGGTAAGATCTTAGAATGTCTCTTTCTTTAAAAGAGTTTTATACCT
CATAAAAAGAGAACTTGTGTGTAAttgacaaatttttagaggtagtgatt
caattttttcatgacAAGAATCAAATAAGATCATTATGTCTTTTCTTTGT
GATGAATTGCATTGGACTTTAAGAAATAAGTAAGTCAAGAGATGATGATA
GAAGgagttttgaatttaaagtttttgtGTCAACTTCAAAGTTTCAATAA
ATTTGGACCTTTTCTTCATTAAGgatatttttcaagaaatttctcCAATA
ATTTTTTGGCACAAAATGATCTGCACCTAGCTAAGAATAAGAAGAGCTTC
CTGGAGCTTCAAAAGATCACTAAATCACTACATTATTCNCTGCACCTATC
TAAGAATAAGAAGAGCTTCCTGGAGCTTCAAAAGATCACTAAATTACTAc
attatttattcattttaggGCAAGTGTCGGTACTGTAAGACAAATTTTTA
ATATTGAGAATGGCTACAGACTCAATGAAAATCAGTAAGTATGCAATACA
TTATATTTGTTCTCGTTTctgcttttatatttttttcaaaattttttttt
tcagaacacaaaaagtttgatataaGATACAAGTATTtgtatagaaaata
aaaaacacaaagaGGAATATGCTGAAAATGCTATATGAATGATACACAAC
TATTTTTGGCAAACTAAATTTTGCTGAATCAAAATTGCTGTCCCAGAAAA
AATTCGCCAAGATTAATTCCCATAAAGTTATTCAATAAATTAGCTTCTTA
GTTTTACATAGCTATCTAATAGCTGGTTTGTATGAATATTGTATGTATTG
TAAGGAAAgactttcgattttcaaaggCAATCTATACAATTTATATAAAG
TTGATCTTGCAAAGGTAATGGAAAATAATTTGTCTTATCCATAAAAAATG
TAGCTTCAGTTCATCTCAATTGTTATTCAACTATTTTTGACACCAATGTG
TTCTAGATTAGTGGTCTGAAATAAGGCATTCTATTGTCAAGAAAAAGGAT
CAATAACGTGACACGTactgttttttatttcaatgcTGCAACAACACAGT
TCAGTATTTTACTCATAGAAATACAGAACTCAATTCTAATACTTTCAATT
TGACTTTAAGGgttgtcaatcattttccaaatcATTACGAGTTGACAAGG
AAAGATTCCATGTTGAAGAATTTGAAAAGATATCGCAAAGAATTAGAAAA
AGAAGGAAACCCTTTTGCTGAGAAAGATGACAATGGAAAGTACACTTATC
TTGGTATGGTAGTCTTTATTACAAAATCAATCATAATCAAACATAAGACA
CATACCTTTAATTCCATAAATTTTTACACCTTCAATTTTTGCGCCTTTAA
TTTTTGCGCACCTATTAAAAAGGATATTTGGATGTGCACCCTTTAATTTT
TGTTCATCTTgtaattttttagctttttccgGGTGTTTTTGGTGAAAAAT
ATGCTTAAAAAGGGCAGACAAGTCATAGAATTATTTTAACATAATCAGAG
gacttgttttttaaaaaagagtgCAAAGATGGTGGCATTCCTTTAATTTT
CGCTCAGGTGATTGTGGGAAAATATACTTTTCTGCGCAAAACGAAAAGGC
GCCCAAAAATTAATGGGATTAAGGTAATAAATGTAATTGTTGAGTAACTA
CGGTAAGGTGAAATTGTTTGACTTTGTAATGACTGTTGTTGTCTCTTAAA
AGATTTATTTAAGGTTCTATAAGGTATAATTTGTTTTCAATGTATTAGCT
TTGTCCACTGTAAAGGATATATTTTCTAAAAGCCTTCAATAGTGATGAGG
CTTGTCGTACATCCCATCAAGTGATTGCAGTAATCAAAGTCTGTTATCAT
TTTAATATCACCTAAAGCTCTACAACAATTGTCTACGGCTCAAAACCCTC
AACTTAGTAAAGGTCCAGCACCAAGCACTCCACCATTCAAGAGATATTCT
TATGGGGAATCTGTTATACTAAAACCTGTCGGGAACCACTTCCCATCCTC
TCtacttttgatgcattttttATAGCTACTAGTGCTTTTTATATCCAATA
ATCAAAAAACATCTGGCGTCAGATCTCTTGCTTGCGTGGATAATTTTCGA
ATGAAATATACCCTGCTTGCCTTCTTATTTAGATCGCCTTACTTCTCCCT
GGGGTTCAAGACCTCGTTGTAGAAAGAGTTACTATGTAAAAagtgttgtt
tttttctctctaaTTTAGACTTCGTTCCAACCACCTTTCTTTTACCTGGT
GATTACAACCTGTTCGTGGAAGAATTTCGGAAAAATCCTTCATCAACATG
GATTATGAAACCTGCAGCCCGATGTATGtatcatgaaatattttttatgt
tttgaaaacaatagcaacttGCTCTGAGGTCACAGAAAGCTTTAACCGAG
AACCAATATCTTACTTTAAAGATGTTCGTATTGTGAATCCTTTCGGAGAG
GCAGAAATGTCTGCGAAAGGAGAATTCATTAAATAAATTATTCCTGCTTC
TTATAAGGACAGAATCTGGTATTGTTGCATATTTTAGTTTTAACTATTTT
TAAACCATCCTGGGGTATTAATGATCAAAACCGGGCCAGCTAATTCTCGA
AAAACCCTCGATATATGAATGGTGCAATCGCCAAAAAGTGcttctaaaat
tatttttttgtttagcaCAAGGCGTCGGAATCTTTCTAATCAACCGCATT
TCACAGATTAAGAAGTGGTCAAAAGATGGAAAGTCTGGAAAGTGAGTGAC
AATATCTTTATACAAATAACTAAAAGTTTGTCTCAAAAATATATGGATAC
CTATCATTCTTTGTTaacaaattttgtctaaaatttTGACTGTAAAATAT
GTGGATACTTtactttttaacaaatttttaacAACTATTTAAGCTCTACT
AGAAAGTAATAAACCGTTGGAAAGATGTTTCTGAGGAGAATAATTTATAA
GATTAaggattgaaaaaaatcaagtaagatatttgaatattttaaaaagt
gtcatgtcataacttttgaaaccaCAAGAGAAAAGATTattttaaatctt
catttttcttccttatttttcaatctttcaaaattttatttaatcGTTCA
GATAATTCTATTCTGAAATATCTTTCCGACGATGTATGGTGAAACTGTTT
AAGAAAAGGACCTTTGCAGACAGACTTTACAAGTCCTTCCATTGTTTTGC
TAGCGAGAAAAGTATCTAAATGTACtgaaaattacattttatcTGATATT
ACTTAAAATCCAAtctttaaaatgtgttttaaGGGGGTTTTAAACTGTAG
ACATGATGATTAAATCTTTGTTCAAagacaaaaataatcatttcatAATC
GGATTTTTTGCCTCTCAAATAGTGTCCCTCACAGCAGTAAAGACTCGTAT
GTCATTTCACGGTATATCGATAACCCTTTATTGATCGGTGGCAAGAAGTT
CGATTTGAGATTATACGTGCTGGTGACATCTTACAGACCACTCAAATGTT
ACATGTAAGTTCCTTTTGTCAATGCTACTTTTATCAGATTCGCGAATTTT
TGAGACAAATCGGTGTTTTTACGGCCTTTTAACTGGTACTTTTGACCTAA
GCTATCTCTGAAGTTGCCCGAAGGTAGGagagggtgccactctttctcca
tGGATTTCTCCCTCAATCTGCCTCCATTGGATACCTTTGTATACCTGGGT
GACCATAAGGTAAGAATCCTAATCTCCTAATTCTCTATATTTCAGGTATA
AACTTGGATTCTGTCGTTTTTGCACGGTGAAATACAATGCAGATGTTAAC
GAATTGGATAACATGTTTGTTCATTTGACCAACGTCTCCATACAAAAACA
TGGGGTAAATTCATTCAGTATTTCATTTGTTTACATATACCGTATTCTAG
AGTGTGAATGTTTTTCAACTCGTGGTATGAACCATTTGTAATGTCTTTTG
ACATTAAATCACGGACTGAACAGCTGAGAGTGACTGATTTTACGTGATTT
TTCTATTTAAAGTCAAAAGCCATTGTAATGATGCATATCAAGAATaataa
gaaattcaaaaaaggtttttaactACCATTTCCAGGAGAAATGTTCCTAC
AATCTGAAATTAGCAAACCTCAAGTAGACATCGATATTTTTAAAGAACCT
TTTTCAGGCATAAGTTGAATGTTTCTCATTCATTGCATGGTAATCgcttt
ttatattattttaggATGAATACAATTCGACACACGGTGGAAAATGGACC
ATTGAAAATTTACGATTGTATCTAGAAGGGACTAGAGGTCACGAGGTAGC
TTGTTGTTTATATTTTCATCCAAACATACAGGCggatctctctaattcga
ttttcggGACCAAGAATTATCTTCGAGTTATATTGAAAGATTCTAATTAC
GGAGAGTTTTTTGTGTCACTTTCCAGCTCAAGGGACCAATATttcagttc
gaattacagaaagattcgaattatagagtgtcgaattagagagagttgac
tgtactGCTCTTCTAGAGTGTTCAAGCCATTCATTATTTGCCGTGGCATA
ACGTCTGATGAATACAGAGCATCATGGTTTAACTCGCTAAAGAGATCAGT
TGTATGTGCTCACTAAACAAAATCTTTAGTGAGTTAGACCATAGTGTTTG
TTTCcccatgaaatgataaaaaaaaattttggtggcAAAAATACTAATTA
TTTTACTGAACGCATTTGTAGTGATgtaggttttattttttagcaattAA
GATATTCGACCGCCAGGTGATATTTAGATTTATAAAGTCTTGCAGGTCTT
CGGTCGTTagtgtaggtcttcggccgttgaAAACTAATCGCACATCAAAT
TTGTAGTTCTTCGGCCGCTAGCGTAGGTCTCCGGCCGCTGGAAAACCGCA
AGTTTAAGTTTTGAAGGTCGTCAGCCGCTAGCACGTAGGTCTTCGACTGT
TGACGGAAGAAAAATCTGCAGCGCATACTATGTATAGAGTTAGTTTAGTC
TGTCTCGGATTATGTCAAATTCTGGTTGAATGTTAAGAATTGATTTTAGG
TCAGTTATATATTTTGaacgttttcttttgtttttaggtTACCAATAAAT
TGTTTGATGACATTCATTGGTTAATTGTGCATtctctaaagtctgtctca
gtAAGAGATTTATTTGGGTAACTTTTCCgaataatctttaaaaacatATT
ATGTACTTTTGTCGGATTAATTTTCGGGAGATTTAATGTCACAAGCCAAA
AAAGACTTTTGAGATTTCGCGAATGAGTCAAAAAAAGTTGCAAATATCCT
TTGAATCGCCATTTTTCGTCGAAAGTAAAAAATTACAGTGAATTTGAAAA
cgaaaatgtcaatttaaagGTTCGTGTGGCTTTATTTTCGCTAGGGAGCG
AGATTTGGTGAGTTTTATTTTcgcaaaaaaggcaaaaattcgcgaaaaat
aaTCCGATTAAAAGTGAAGTTtatctcaatataatttgcagctgagacaa
aaacgACTGTAACTTTTGATCGAATTcgatagcggttttgtgctcgtaaC
AAGATAATATGGagtagaatatttaaaaaaagaaaaaaaaattaaaacat
ggaaaaaaaaggtgaaaaatgaagaagaaaatcaactttttgtagaataa
tgctatgGCCTTCATTTTCATATcagaaattctttaattttagaacgtca
taaatgcgaaaaaatttcaaaaaatattcagtcaaaaaatacagcttaaa
actttgTCCTGGTTGACACAAAAAAtggctcttttttgttgttttctttg
atggaTCAATCAGTGATAAACTTTGGACTAAATCTTTCGACggaataaat
ttctttgaaaaactttttcacattaatgatgttctaagatcaaaggATCA
CTCTTGTGaatatgataattttataacaattattgaagaagttcATTTTC
TCAGAGACTTTTTCATTTTCCGATCCTTTTCTGATCTTTTCTttatgata
atattccactccagattatttttttagcgagcacaaaaccgctatctaaC
TCGAATTACATCAAAAGTTTAAGCCTTTTTTCTCTcggctgcaaattata
ttgaaacCGACTTTAGTGACTTATTCACCAAACTAATCAACCCTTTTGCT
AAAAGGGATTGTGCTCAAATTTGTAACGGTTAAAGTAACCTGCTCAAAAG
TATGAACTCACACCCTAAAAACATTCGCTTGACGTCACTGGACCCTGGTA
AATTATATCCCGATACGGTCCACTCTTTTGGCGTTATGTTTCATACCCCA
TTAAAAACACCTATCATATTCAGATCCTCAACGATGAAATTAGCATTTAT
GACATTGAAATCTCTTCTTTTCTTACCTGCCTTTGATAGGGTGTCATGGT
AAATGACCGGCACTGCTACGAAGTTTATGGGTGAGCGAATCACGTCATTT
CAGGGGAAACCTCTAACTTTCAACATTGTCCCTTATCCAGCAGTAGGCTC
TTTGTGTCCCATGCTTTATTCTTTATTGGCAACTACGAGTTCACGTGCAG
AATCATGAAGTATCCATTTACTTCAGTCTCAGTGAGACAAAAGGTTTGCT
AGGTCGGCAGACGTTTCTTGATGTAAATGTGTCTTTCGGTCGAAGAACAG
CGTTAACTGCCAATCTTCTTCTATCAATTGCATCGATACGCCTTTTCGCT
TTATAAACAAAAACTGCCAGTCTGCGTTTGAAATGAGGTTCAGTTATTCC
GATTCTGCAACTAATTCTACCCTCACAGAAGTTTCTTCGTTTCTTTTGTA
TGAATAAAATGGAGCTTTATTCGTTTTTCTTTGCATTTCTACTCTTCTAA
TTTTTCCTGTCTTTTCAGGTATGACATTATCATTGATGATTTTCTGAAAC
CTTGGATTATTGAGGTaagtaattttttaaagattgaaaagtttttcaag
gGAAACATGCCGTAATGTAAAAATAATTAGTCGGGAGAAACTTTTGTCGC
CTTTGAGCATTTTCCTCGTTTTAcccaaccaaaatttcaaagtcgTCATT
TTTTCCCAAGCAGATTTACAATTTTGTCACTTCAAaccttaatttttttg
aaaaaagattttttgcctCAAAACTTCGGAGGATGAGACTGATTTACCTT
CTAGAATATTATTCAACTTTGAAAGAAGTCTCCTCTCTACCCATTTAAAG
GTTAACGCTTCACCGTCGTTGTCAGCGACCACCTCAGCTGATCGAATCAT
GAAATTCTCTTTggttaatgacgtcatcaatattGTCGTTCCTCCAGGTG
AATTTCCTGAGTAAGTTCATTTGATTGGATCTTTTGATTGGAAGTCATCT
CAGgcccgtaggaagcattttcatctTGAGGGGCAAAGTGAGAAATTTCG
caatttaaggtgtctagattgctagaaaACTGCATCTAATTAAAggatta
ttttaaaaatgatgCCATTAATGCAAGATTTTTAAAGGTACcaacttttg
gaaattttttatttttttttttgggggggggggaatNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNACCGGTTGCTACGGGCCTGGATCTGA
TCTTCATTTTAacattctttgttttttttgtctcaGCGAAGTATATAGAG
ATGCGTTTCCGTCtaaaaattctgcataattcaccaaagCGAGGGGTAAA
AACACTCCGAAAAAAACGTACGTGATTATTTGATTTTACTGAGtttgctt
ttgatttttttgatttaattgattttattgatttcaaccttgattttatt
ttattttgtcttcgattttattgatttttctgattttttttttaagtgta
cGTGATTTTCCCGAGTGTTTTACCCCTTGCACCAAAGTTTCAAGAATATG
TGCAAATTTattgtgtaaaatccattttcagtCTCGAACGAAAAACCTTG
TTTTGATCACTGTTATAAGGCACGTAGCAAAAGTCAAAGTCAAAACATAC
CtatttagaaaaacaaaagttttttatcaCGGATCAGAAAACATTTGATT
CTTATCTCAAAATGACTTCGGTGACCATTAGGGAAGCCAGACTCGCTACT
TTCACTGTTATATCACTTTTCGTAAGCCGactgataatcgaagtatcgat
tgatGTCAAATGATCTTAAAATGAAGTTCAAAtatgcagatgtagaacga
taaacacGGTATACATGGCTATCTTCGCTATCATTGTATTTTTTCGTTTT
ATACTTTCACAGTGTTAGGAGGGAGAAGATTCCAAAGAAAGAACACCTTG
GTAACTTCGATGTCCTGTGAGTTTGAAATACTATCCATCTTTCTTCCATT
TCAAGCTTATGCATAAtttgatacacgtttttatttataagcagaAGCCG
ACAAGCATATACAGGTCAAAACCTTTCggctttttttttgttttcacaca
gcgtgtttttgagatatttgggTACATTTTACTTTCAATAAGTGGCTTGA
TAAAATAACTGggttcatttcccatccaacgTGTATCTCTATCCTCTTCG
GGACTTTAAACTCGATAGTTCTTGTAATTCAGACTGGACGAAGAAGTAGC
TGGTCTCGACGGTTCAGGCTCCGATAGGAGTGGTAAAGGCAAGAGCAAGC
TGACTAACAAGGACAACAGAATGCAACGCGCTACTTGGAAGTGAGAAAGG
TATGTAACTTTGAACTTTATTTATCCCAATAGTATGGTAAAAGATTCAAC
AGAGAAGACATTCTTTAAAAGTGTTGTGGGGAATCTTACTTGTATTTTTA
ACAAAGCACGCGTGCTCATTATCTATATCTAAATAGTAGGACTATAAACT
GCGTTGAAAGGATATATGGTACTAGCAAACACGTTCACAAACTAGCACGA
TATCAAAAAACTTCCCATTAACGTATGTTACGCAGATGTACTCACCGTTC
CCGCGTTCCAATAAAGATCGAGTTAAAAACATGATAGATgtactacctta
agtggattaaatttcgcgtggattaattttcgcggttttcgcgatttttg
gccgttttcgcgaaattttgtccacgcgaaatatttaaattctaaaaatt
ggccaaaacctctaggaaaatgaaagaaatcgggtgaaaaagaggctgat
tcgcgaaattttgtccacgcgaaatatttaaattctaaaaattggccaaa
acctctaggaaaatgaaagaaatcgggtgaaaaagaggctgattcgcgaa
attttgtccacgcgaaatttttagattcttgattcgcgaaaaaaagtcca
cgcgaaaatttatccacttaaggtaatcgTAAAAACCTAAAGCTATGTCT
GTATGAATCATATCAACGTAATAATCAGATACTCTGTCTATGCCTTCTTA
GCAACCTGCATATTGGATTTTTTCCCGGTAAATTAAATATATTTATACCC
AACCCTCAGGTATAGACAACGAGCCAATGAGAAGCCTTCACTTTTGTGTA
TAATACAGAACCCCAACTTAAAGAGACTTTCAACTACCATGTTTACAAAC
TgattacaaaaacaaagaaaacaattttcagttttttaaacTGTCTATTA
ACCAGTCGACCGTATCTTAAATTTTAGAAACAAAACAGTCGAAAAACACG
AAATAAACACTACAATTTAGTGAGCATAATGTGAAAACAGGAAACTGAAT
CTGATTAGAGACATCTTTGGCGATTTTTGGGgctgttttattgttttttt
tatgatataaaGACAATGAGTATACACATGTGAAATCTATCAATTGAGCA
CAAACCTTTGTTTTACAATGAGGAGTATACCGTCGACGTTGTCTTTATAT
CTTATCGCACTGCTGTGTTTTGCAGATTTCTCCTTATCCAAGAGACACCA
TGGTAAACAAAGGAACTATCaaggacaaaagaaaaatattgttaCAGGGC
GATTAGCCATTCGTCCCTTAAAACGGTTGTTGGAGACAAGTAAGCTTGAT
ATGCAACAACACTTAAAACTGGACGATCTTCCTGGAGAAACGAAGGATTC
AATACTACAAGGTGCCAATAAACATATACCTAAAATCATGGTTGTTATGC
CGAAAACAGGAGATATGATCAGTCTAAGAACATTCCATCGATTGCATCCA
AAGAATGGATCAGTAACACCTTTGTACAGTGAAGATAAACAAGGACGTCG
TGTCTATTTCCTTCCTGTTGCAAAGAAGGTGGAAGGCAGCCCTGGATATG
TCTTGGCAAAGAATTTATTGACAATGACTAAGCACACGGTCGATACTTTT
CTCGGCGAACACCATTTGTTGGAATCACCAANCAATGACTAAGCACACGG
TCGATACTTTTCTCGGCAAACATCATTTGATGGAGTCGCCAGGTGGTGGC
ATCAATATTGAGAAATTCACCGATGGTCAATCAACATCTCCGTCAAGTAA
AGACACTGTTTTTGATGATAACTtggaagaaaatattgaaaaaggaCGAC
TTTTGAATGAGACTAAAGACTCTGAAGAATTTGACGTCGTGAGTCAGAAT
GATAAAAGTTTGCTTGGAACTGCGCATGGCGATAAGAAGACACAAGATGT
TGGCAATCAAGATGATGATTTTGAGACTGTCAATTCCTTTACCCAAACTC
CTCGAACTGATCAAGATATTGATGACGGGGCTAAGAGAACCATTTACGAG
AAAAGCTCCAGAGATGGATCAACTGAAGATGACGGAGTTGGAGCTAAGCG
AACCATCAAGGAGAATACCGAAAACGCCAAATCAGCTGTCAGTGAAGATA
ACAACGACCTTGTTGATGATATTGATTACGTCAATGTTGTTGGACCGAAC
ACCAAGGATGGCAAAGGATCTGTTGAGAATGTTGGTAAAGAAAGTGAATC
CAACTTCCAGAAACAGCCTACAGAAAGTGTTTCAGAATCTGGATTCGCCA
AGCTCCGGgctaaatcaatttttgaaaacatggcCCCTACTGAACTTTCA
AGCTTTCACAAACAATTGATTTACGAGGGAATGGAATTATCGGATAATGA
AGTTTTTCAAGAGATTGCAGATGACAAGGATGAAGATGAGGATGAAAAGG
ATGAAGAATCTGAATTCAATAAGTTGAAACAAAGTTCTGAGCAGAATCAA
GCACACCCGGCAGACCCTGCAGTCAAGAAATCCCAACAAAAACCAAGACA
AAAGTTAGCACAGCCAACAGACCCTGCATCTTCGAAGAAATCCCAACAAC
AGTACAACCAGAAGCTGGCAAAGTCTTCAGACTCTTGGAAGAAATCTCAA
CAACAGGCGGGAAAGAGGCTAGAGAAGGAGAGCTATGGAACACAGaaaaa
cagtcaaaacaaagaggTGAAAGAAAAACATGGACCGAATCTTGAATCTA
ACAACACAACGAAACAACATCTTCAAAGTGCGAAAAGTCTAGGTGTCAAG
ATACGACAAGAGTTTGTGAAGAATCTTGCTTACACATCAGACTCTAAACC
AAAATCAATCCAGCAAGAATTCATTGGGAATTTAGGGCAAAACAGTAAGT
ACCAGAAGGCTCCAGCGGTTATCCAATCAAGANAGGCTCCAGAGGTTATC
CAATCAAGACAGAGCTTAGTGCAGCCACAATCAAGTCttcaaaacagaaa
gaaagaagctccaaagaaaatttctccaaagtttAGGCCGAAATTCACGC
AAAAACAGAATAAAAAAATACAACCCATAAATCAAGTTTTTACGCATAAA
CCATCGGTTAGTGGTCAGCAAAACCATAGGGCATCACAATCGCTAATGAG
CTCTCTCAATCAGCAAATTGATACCCATCCAAGTGCGGTAAAAGTTCAAC
AAAACATCAAGCAACAATCTAAAAAAGTTTCGACGGCTAAACAAACTGCA
ATCAAAGCACCGAATCAGAGTTTCCGATTTCAAACAAGTTCTTTTGCAAG
AAAAAATCAACATACCAACATGTCTTCTACTGCTGCAATTAACAAAGTTG
TAACAACTAAACCAATCCGGAAACTTGCATCTAAAACCTCGAAGTCGAGT
TCACTTAAGAAGTTCCAACAAAAGCCGAAAACTACGCTTCAAGCTCAACT
AAAATTCCCAACCATGCTAAATCTCCATCCAATGCAACAAACTAACCAAA
CCTATCAGCAAAATTACCAAACTTTACAACAATATTATCAACAGAATCAG
CAGAATACAAATCAAACATAtcaatcttatacaaaacaaccAACCATTCA
GTATTACCAGCAGCAACGGCCTACATTGCAATACTACCAGCAAGGAGATC
AGAAACTGattcaaaattaccaaaaaccTGCTAATAAAACTAAGTTTAAT
CTTGAACCAAATATGACAGCATTTGCATTGACCAATTTGATGAAAGCTAT
CACAAACTCTAAGAATGGAACCAAGATTAACAACAGCACTTCAATGGATA
TTCTCTCTCTTCCTCTTCAACAACCATTCGCCAACAATAAAGAAAACCAA
GCTCTCATCAACCAGTTTGCGAAGATGTATCGCCAAGGTTTACCACTCAA
CAAACGTCCTAAATCTCATAATAACTCTGCTCTAGAATCTGCTTACCAGA
CGCAATATGCTAACCAATACAATCAGTATCAAAGTAATCTCAATTATGCA
GCATATACAGCTAACCAACAACAACCATATCCTTCTTCAACAGGAAATAC
ACCAGAATCACAGTATCCAGATCTGCAAGGATACACCAAACAATCAGACC
CACTTTCTCAAGGAAACCAATACTCTCAATACGACGCCAACACTGTAAAC
GCGTATTCGACAACCAACCAGGATTCTCCACAAACTGAAGCATCAAACCA
GCCACAGAATTACGATTCAAACATAGCTTCGGCATTCACCACAAACGCCC
AATCAACTTTCTCTCAAACACCACTCTCTGATCAATTCACCCAATCAAAA
TTAACTCAAAATGCAGCATTTCCTACCCAAGATGGATCTATCACTAATGA
TCTCACCAAAACAGCTGCATCAGTCATGGGTGAAGAAAAGGAGCTCACCA
GCACCAATGCTGATCAAACAGCACAAGAAGGTCCTGGTCCCGATAATAAT
ACTGCAGATCCTACAATTTCAACATCGGACGCTACCAGTCTTGTCAGTAA
TGGCCAAGATACAGCATTAACACCAGAAGCTACCAGCCAAGGTGCAGAAT
TCATAGAAAAGACACCCTCGCAAGAAATCAGCGCGCCATATTCAACATTA
TCAGAGAATGTACCATTAGCTCCACAACAAGCTATCAACAATTATCCTGT
CACTTTCTATCCTCAACAAACACAGGAGTACTCCGAATCTGCAGCCTTTT
CCAGAACTCGTGTTAAAAATGTAACCCAAAAAGAAAGCAAGCTGACGCAC
CAAGCCAGTGCTGCAAACAGTGTCCAACACCTCACAAATAACGTTGACCA
AGATGGTTTCTTAATCTCCAATGATATCCGATATCCAAGCCCTGTGTTTC
AAGTGTCCTCACAACAAACAGAGTTCCTACAAACTGCAAACAAAGCTATG
GCTGATGTATTGCGCGCTAAATCAtctactgaaaatttcatcaaaaacat
gaacaaaAACCAGAACGTCAATGCTGCACATACGGCAAATACAGGACTGG
CACAACAACACAATACAGCAAATTCTCAACAAACAGTCCAACCTCAATAT
ATAGTTNCAACAACACAATACAGCACATTCTCAACAAACAGTCCGACCTC
AATATAAAGTAGCTGATCAAGTTGCAAGTAGTTCTCAACCAAATACCAAT
GCAAACGTAGAAGTAGTTCAAACTCCACAAGTCTCTGCTACCAACTATGC
TTCAAATACCAATTACTATGACCCTCAGAAAGATTACGAACCGGCGGCGC
TAGATGCTTATCTACAACCAAGTACCGCTAACTATTTCGATAAATATTTC
TCACATAACGGTATCCCTGATCAGCGTCATCATGCCAAAGCGTACAGTTT
CTTGCATTCTTTCTTACGCCACGTCAAAAGTATTACGCACGATCCAGAGT
TCTGGAAAACCCAGCAACCCATCCAAGCTGTTACCCAAACAGCGTTTAAG
AGGAACGAAATCACAGAACCTATCCTTGAAGGTCACAGCAACATTCGTGA
TCATGTTGCAGGACGTATTTTGAGTGAACCTAACTATGTCCTTGGAGATG
CAGGTGATGTAAAGAAGCTTCTTCATGGATCTGGATTCAATACATTCAAT
GATGAAGATATGAAACTTCTCTTTGGCTCGCCAGCTGCCAAGAAATCAGA
AACCAATGGAGatgaaatttcaaagaaaactaTAACTAAAGCGTCGAGAA
ATGGAatcatctttttcaaaaataatgctGATAAGAAATCAGAATCTAGA
TCGTCCATGACCAAGATACCTAACACTAAAGCAGCAACAAATCAAGCTGA
GACTGCTGCATTACATCACAAGCATCAGAAGAAGGACAAAATATTCAACA
CCAGAGATGAAATGAAGATTGACGAACCAGCTTTCCTCACACTTCTTCTC
CCAGAAGATGATGAAAGGGTATGTTAAGGTTTATGGTATTTCTGCAATTC
TTTGTAAATAATATTGCAAACTCATTAAAGCAGGTCTCCACTTTCTCGca
acatgagcgaaaactttttcatgtttttgtaaggtcggttgaaaaatgaa
gcaaattcattggtcgaaattgacgtaacggatgaaaaaaagtagaactt
ccttcaactttttttttattttctcgaaacttttttatgacgtaatcttt
tcttcaggcaaaaaaaggttaagaaaaaaactgtcgccaatttcgcgcga
aagtggagacccgCCTTTATtcagttttatatttttgatctAACTACATG
TGACTTTTTCCCTAACCGATTGGCTATCTTTTGTATGAGGAATAAAGTTT
CTTAACTGGTTAATAGACAAACTTAACATATTTTAAAGGGGATTTAAATT
TATAACAAAGAAAGGCAGTGTCGCAATATCACGATTAAAATATttaagga
aaaaaatctaaCAGGTAAACAAACCTCGAAATCTCAGAATCCTATCTTCT
TCAAAAAATGTCCAATCATGTGAGATTGACCTACCAAAAAATCATCCTGG
TTTATTTCATAGATTTCAACTCAAAGAGGAATGAAGAGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007035XLOC_007035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012533-exon-sc0000145-1491911889:463075..463230TCONS_00012533-exon-sc0000145-1491911889:463075..463230Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:463075..463230TCONS_00012533-exon-sc0000145-1510915933:463075..463230Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:463075..463230TCONS_00012533-exon-sc0000145-1575043694:463075..463230Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:463693..463758TCONS_00012533-exon-sc0000145-1491911889:463693..463758Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:463693..463758TCONS_00012533-exon-sc0000145-1510915933:463693..463758Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:463693..463758TCONS_00012533-exon-sc0000145-1575043694:463693..463758Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:464385..464527TCONS_00012533-exon-sc0000145-1491911889:464385..464527Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:464385..464527TCONS_00012533-exon-sc0000145-1510915933:464385..464527Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:464385..464527TCONS_00012533-exon-sc0000145-1575043694:464385..464527Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:465493..465597TCONS_00012533-exon-sc0000145-1491911889:465493..465597Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:465493..465597TCONS_00012533-exon-sc0000145-1510915933:465493..465597Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:465493..465597TCONS_00012533-exon-sc0000145-1575043694:465493..465597Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:465940..466015TCONS_00012533-exon-sc0000145-1491911889:465940..466015Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:465940..466015TCONS_00012533-exon-sc0000145-1510915933:465940..466015Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:465940..466015TCONS_00012533-exon-sc0000145-1575043694:465940..466015Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:466647..466778TCONS_00012533-exon-sc0000145-1491911889:466647..466778Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:466647..466778TCONS_00012533-exon-sc0000145-1510915933:466647..466778Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:466647..466778TCONS_00012533-exon-sc0000145-1575043694:466647..466778Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:467020..467128TCONS_00012533-exon-sc0000145-1491911889:467020..467128Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:467020..467128TCONS_00012533-exon-sc0000145-1510915933:467020..467128Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:467020..467128TCONS_00012533-exon-sc0000145-1575043694:467020..467128Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:467489..467569TCONS_00012533-exon-sc0000145-1491911889:467489..467569Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:467489..467569TCONS_00012533-exon-sc0000145-1510915933:467489..467569Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:467489..467569TCONS_00012533-exon-sc0000145-1575043694:467489..467569Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:468362..468424TCONS_00012533-exon-sc0000145-1491911889:468362..468424Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:468362..468424TCONS_00012533-exon-sc0000145-1510915933:468362..468424Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:468362..468424TCONS_00012533-exon-sc0000145-1575043694:468362..468424Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:469664..469704TCONS_00012533-exon-sc0000145-1491911889:469664..469704Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:469664..469704TCONS_00012533-exon-sc0000145-1510915933:469664..469704Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:469664..469704TCONS_00012533-exon-sc0000145-1575043694:469664..469704Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:470143..470188TCONS_00012533-exon-sc0000145-1491911889:470143..470188Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:470143..470188TCONS_00012533-exon-sc0000145-1510915933:470143..470188Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:470143..470188TCONS_00012533-exon-sc0000145-1575043694:470143..470188Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:470475..470584TCONS_00012533-exon-sc0000145-1491911889:470475..470584Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:470475..470584TCONS_00012533-exon-sc0000145-1510915933:470475..470584Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:470475..470584TCONS_00012533-exon-sc0000145-1575043694:470475..470584Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:471637..471690TCONS_00012533-exon-sc0000145-1491911889:471637..471690Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:471637..471690TCONS_00012533-exon-sc0000145-1510915933:471637..471690Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:471637..471690TCONS_00012533-exon-sc0000145-1575043694:471637..471690Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:471957..472073TCONS_00012533-exon-sc0000145-1491911889:471957..472073Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:471957..472073TCONS_00012533-exon-sc0000145-1510915933:471957..472073Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:471957..472073TCONS_00012533-exon-sc0000145-1575043694:471957..472073Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1491911889:478537..478565TCONS_00012533-exon-sc0000145-1491911889:478537..478565Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1510915933:478537..478565TCONS_00012533-exon-sc0000145-1510915933:478537..478565Clytia hemisphaericaexon
TCONS_00012533-exon-sc0000145-1575043694:478537..478565TCONS_00012533-exon-sc0000145-1575043694:478537..478565Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:463075..478565 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.03545	4.98856	5.02646	3.38791	0.630276	0.322291	1.68943e-05	0.783904	3.42557	3.3775	2.587	2.41841	1.06016	0.657117	0.903585	1.47585	1.66765	6.29956	0	1.76193	1.2691	1.61237	2.721	5.96976	5.39928	2.32029	0.870772	0.953109	2.48341	2.34754
Blast
[Close]
BLAST of TCONS_00012533 vs. Swiss-Prot (Human)
Match: TTLL1 (Probable tubulin polyglutamylase TTLL1 OS=Homo sapiens GN=TTLL1 PE=2 SV=1)

HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0
Identity = 268/385 (69.61%), Postives = 332/385 (86.23%), Query Frame = 2 
Query:   50 ARISYATDFEKSVLVNNFEKRGWNHVNPEDEWHFYWASVGTVRQIFNIENGYRLNENQVVNHFPNHYELTRKDSMLKNLKRYRKELEKEGNPFAEKDDNGKYTYLDFVPTTFLLPGDYNLFVEEFRKNPSSTWIMKPAARSQGVGIFLINRISQIKKWSKDGKSGN-VPHSSKDSYVISRYIDNPLLIGGKKFDLRLYVLVTSYRPLKCYMYKLGFCRFCTVKYNADVNELDNMFVHLTNVSIQKHGDEYNSTHGGKWTIENLRLYLEGTRGHEVTNKLFDDIHWLIVHSLKSVSGVMVNDRHCYEVYGYDIIIDDFLKPWIIEVNASPSLSATTSADRIMKFSLVNDVINIVVPPGEFPDVRREKIPKKEHLGNFDVLLDEEVA 1201
             ++ + TD EKSVL+NNFEKRGW  V   ++W+FYW SV T+R +F++E GYRL+++Q+VNHFPNHYELTRKD M+KN+KRYRKELEKEG+P AEKD+NGKY YLDFVP T++LP DYNLFVEEFRK+PSSTWIMKP  ++QG GIFLIN++SQIKKWS+D K+ + V  S+K++YVIS YI+NPLLIGG+KFDLRLYVLV++YRPL+CYMYKLGFCRFCTVKY    +ELDNMFVHLTNV+IQKHG++YN  HGGKWT+ NLRLYLE TRG EVT+KLFD+IHW+IV SLK+V+ VM ND+HC+E YGYDIIIDD LKPW+IEVNASPSL+++T+ DRI+K++L+ND +NI VP GE PD +  K P KE LGN+++L DEE+A
Sbjct:    3 GKVKWVTDIEKSVLINNFEKRGWVQVTENEDWNFYWMSVQTIRNVFSVEAGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDENGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGKAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSNKEAYVISLYINNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRFCTVKYTPSTSELDNMFVHLTNVAIQKHGEDYNHIHGGKWTVSNLRLYLESTRGKEVTSKLFDEIHWIIVQSLKAVAPVMNNDKHCFECYGYDIIIDDKLKPWLIEVNASPSLTSSTANDRILKYNLINDTLNIAVPNGEIPDCKWNKSPPKEVLGNYEILYDEELA 387
The following BLAST results are available for this feature:
BLAST of TCONS_00012533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTLL10.000e+069.61Probable tubulin polyglutamylase TTLL1 OS=Homo sap... [more]
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