|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000038 ID=TCONS_00000038|Name=TCONS_00000038|organism=Clytia hemisphaerica|type=transcript|length=2103bpRun BLAST on NCBI transcript from alignment at sc0000001:1005161..1016571+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000038 ID=TCONS_00000038|Name=TCONS_00000038|organism=Clytia hemisphaerica|type=transcript|length=11411bp|location=Sequence derived from alignment at sc0000001:1005161..1016571+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000038 vs. Swiss-Prot (Human)
Match: SERC3 (Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2) HSP 1 Score: 230.335 bits (586), Expect = 7.155e-67 Identity = 162/405 (40.00%), Postives = 226/405 (55.80%), Query Frame = 3
Query: 453 QNSTASRIGYTLVLLLGFILSCVMLSPNIRQKLNKVPHLC------------PTFDCDQVVGYVAVYRVCXXXXXXXXXXXLITFKIRNSKDPRASIHNGFWAIKLLVFIALLVGAFYIPKGDFSRVWMYXXXXXXXXXXXXXXXXXXXXAYSWSQKWIGKYEETDNKIWFIGLAVCTGGLYAIALAITICGFIFYTKTSGCGLNKFFLSFNFIIAVLLSLISIHPRVQESQPTSGLLQASIISAYSMYLTLSAMSNEPGTDCNPG-SSF---LQSDSFAPGFDTQTVLAA-------------------IFLFCTVVYSCVRTSAKSSSLSIQSDDADIEEVLLIENNGQGDDDVEYKGQ--KVYDNESTEVAYNYSXL--------------LRTWNTKDKKF 1514
+NST +R+ Y +LLL ++S +M + L K+P C DCD +VGY AVYR+ FAM FFF+ +L+ FK++ SKD RA++HNGFW K+ I ++VG+FYIP G FS VW +GMIG LFILIQLVLL+DFA+SW++ W+ + EE + ++W+ L T Y +++ + +YTK GC NKFF+S N I+ V+ S+ISIHP++QE QP SGLLQ+S+I+ Y+MYLT SAMSNEP CNP SF + + + APG T V +F+ C ++YS +RTS S + +D V+L + G D E GQ + DNE V Y+YS L +W + D KF
Sbjct: 33 KNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDGCTENKFFISINLILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMSNEPDRSCNPNLMSFITRITAPTLAPGNSTAVVPTPTPPSKSGSLLDSDNFIGLFVFVLC-LLYSSIRTSTNSQVDKLTLSGSD--SVILGDTTTSGASD-EEDGQPRRAVDNEKEGVQYSYSLFHLMLCLASLYIMMTLTSWYSPDAKF 433 HSP 2 Score: 97.4413 bits (241), Expect = 3.433e-21 Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = 2
Query: 1493 EYKGQ--KVYDNESTEVAYNYSFFHFTYALASLYIMMMLTNWYSPEGANFKTLTSSMATVWVKMASSWACFVLFGWTLVAPMLFPDREF 1753
E GQ + DNE V Y+YS FH LASLYIMM LT+WYSP+ A F+++TS VWVK++SSW C +L+ WTLVAP++ R+F
Sbjct: 385 EEDGQPRRAVDNEKEGVQYSYSLFHLMLCLASLYIMMTLTSWYSPD-AKFQSMTSKWPAVWVKISSSWVCLLLYVWTLVAPLVLTSRDF 472 The following BLAST results are available for this feature:
BLAST of TCONS_00000038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.