XLOC_005159 (gene) - C. hemisphaerica

Overview
NameXLOC_005159
Unique NameXLOC_005159
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000091:190710..195054+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005159 ID=XLOC_005159|Name=XLOC_005159|organism=Clytia hemisphaerica|type=gene|length=4345bp|location=Sequence derived from alignment at sc0000091:190710..195054+ (Clytia hemisphaerica)
aagaaaatcaaatcaatcataTTCTAGAACGGCGCACTGTTTGTGTAGTT TattaaaacaaaacatttactTTGGTTTGAAATTCAACCAGCCATGAAAA TTATGCTCAATACCTCATATTAACTCTCGCTGAGATCTCGTGCATCGCTT TTTGATGGAAaagtaatacaaaaaaatttctataacTTATTTCGAAAACC TTCATCTATCCAGGTTTTAATTGGACAATTTGCNGTAATACAAAAGTAAT CTATAACTTATTTCGAAAACCTTCATCTATCCAGGTTTTAATTGGACAAT TTGCAAATGAAAAGGTGAGATTTAATATTTCTCGGACAAATGTTTTAACG GACACACAGGTCAGTGATGGCCTAAATCAGGGGCCAAACTTCTAAAGGGG gtatctcaaaaagttaagttcTCTCAGCTACTATAATGAATAAATATTTG AGCACTAAAGACTGCTTTGGGAGACGATCCTTCTTATGCGTAAGGAGTGG TAcggaaaatatttcttgaaacTTGCATTTATTACGACTGTGGTGTTCCA GAATTACTTCAAGAAACACTTTTTGATtaaataattttgtgattttttta agttACCCTTTTCAATACACGATTCTgaaaaaacagaagaaaaatctCTT TATACCTGCGTTATTGAATCAAAAAGTGGTTTGTAAAGTGTAATCTAGTT GTGCTAAACATCATAAAAATTTTACCCGAGGGCGTAAAAGCGTGAAACTT AACACGTTGGTTTCGGAGCCAAAATTCGGTTAAAATTTTTGGGCATTATC AAATAATAACTATTCTCTTTATTTATTTTACAGGATGAGGGTGGAGTTGG CAATCAGCGCCCTTCTACTGATTCAAATAATCAACGCCCTTCCACATTCA CGATACCAAGAATCGAACAGTCGTACGAAGAATGTTGGAGGATTTCGCAT CAATAAAAAGGGAGTAGTCGAGCAATGCGTAGATGCCGCCTGTGAGACAA AAGGTAGTGGAATCACAGATACAGCGATCGCTGAGATCAAATCACAGATT GAACACAGTAATGGCAAGATGGACATGATGAAAAACGGCAATCGTCATAT ATCGACTGTAGTAGCCAAAAAGAAATCTGCAGAACCTTCTGTCACTGAAG ATGCTTTCTTCGCAAGCCCTGAAGTGGAGAAGGAGATTGTGAAAGGCGAA CAGAGGATTCTCGCTGCAAAACAAAAAGCAGCTCATAAGAAAGAAATCGG AGAGAGTGATAAAGACTATTATGCAAGAAATCTCGAAGAGGATCATACAC CTAAAAAAGCAAACGGGGAACCAATGAAGCTTGCGACAGACGAAAAGGAG AACATGAAATTACCAGGAGACAATCCAAAGACTGATTCCAAGTCAAAGAA GGAGCCACAAGACCCAATGCTGTTGCCAGGCGACCCTAAGAAAAGCAGTG AGGATGAAGCTAAACCAAAGAAAGACGAGAAGTCAAATAAGAAGGCTGAA TTGAACACAGATTCAAAAGATTCAGAAGGTGTTCCAACCAAAAATCCTAA TGATAAAACAGAAGatgagaagaaaaagaaagacgaGGACGAGAAAAAGA AAGACGAGGATAAGCAGAAGGAAGAAAAGATGGAAAAAGACGCTAAggaa gaacaaaagaagaagGAGGAGGAGGCtgagaaggagaaggagaaggagga gaagaagaagaaggaagaagaagagaagaaagaaCAAGAAAGAAAGGACG AGGAAGCAAAGAAGAAGGCTGAAGAGGAAGAAACGAAGAAAGCTGAAGAG GAAgaagagaagaagaaaaaagatgaagaagaaaagaagaaaaaagatga agaagaaaagaagaaaaaagatgaagaagaaaagaagaaaaaagatgaag aggaaaagaagaaagctgaagaggaagaagagaagaagaaaaaagatgaa gaagaaaagaagaaggctgAGGAGGAAGAAACGAAGAAAAAAGATGACGA AGACCCAAAGAAAAAGGAGGAGGAGAAGGACgaagaagagaaaaagaaag aggaagagaaaaagaaaaaagaagacgaAGAGGAGAAAAAGAAGGAAGAG GAGGAGAAGAAAAACAACGACGAACAAACGAAGgagcaaaagaaagaaga aggcAAAGATAACAAAGAAGCTGAAAAAATGGACGAAAACAAGACGACTC AAGCCAAAAAAGCTGAAGAGGAAGAAGAGAAAAAACAAGAAGCAGATAAA AAGGAAAACGAGAAGCAGAAGAAGGCTGAGGAAGAGAAAGAAGCTCAAGA AAAAGAAGCGAAAAAGAAACAAGAAGAGGAAGAGCAAAAGCAAAAAGAAG CGATGAAGCAAgctgaagaaaaacaaaaggaggatgaaaagaaagtcgaa gaagagaaaaaagaagTGGAAAAGAAGGCAGAAGAACAGAAAACACTTGA CCAAAAGCAAGctgaagagaaagaaaaattgattaaGAAGCAAGAAGAAG AACAGAAGAAGCTCGAAAATAAACAAAGCTCCGAACAACCAAAGGAAAAA GAGGCTGCTTACGGAGATTTCAAGAAGTTCAACCCGGCaggagaaaaaga aaagaaagaaggcAGTAAAATGGACTGGTTTGACATGAAGGATATGGACC ATGATCAATCCATTCGAAGTGAATGTACTGACGCCGCATGCACGGTGGCA GGGGCCAGTGCCGTACACGAGAGCAAAGAGGAGGAAGCTCTTAATGCACT GAAAATGGCAAAAGGAGAGAAAGACGAGAAAGCAAAAGAAGATATAAAAC CTGAAGACAAAATTGTTGAAGATAAAAAACctgaaagtgaagaaaataaG AAACCCGAGGAGGAGCCAAAAGTGGAGGAGACGAAAAAACCTGAGCAGGA GCAGAAAGTAAATGAAGCACTTTCCAAAGAAGGAGAGAAACCACTCTCTG AGGAGGAGCACGGAAACAAAGGAGAAGGGTGCACCGATGCTGCTTGTTCA GCCGCTTTCGAGAAAGACAACAAGGGTGAGAGTGATGGCCAGAAAATGGA GGGGAGCGAAATGAAAAAGGAAGGAACGTCAGAAGAGAACGGTGGAGAGC AAACAAAAGCTAATGAGAAGGAGGAGGGAAAGGAAGAGGATAAAAAGTTT GATCCAAAAGAAGATGATAATGGTCCCAACAAGAATTGGCTTCCTAAATT TTCAGAAGGCGAAAGAGATTCAAAAGATGAGAAATCAAGTGACGAAAAGG AGGAGAAAACAAAATCGAACGATTCACAAGAATTATTAATGGATAAACCA TCACAAGACCAAAACGAACAGAACAAAACAACCGAGTTTGATAACAAATC GAGTACGAAGAAAGAGGAAGATgacgaaaaaaatcgaaaagaagaagaaa ataaagaagaaacgAAAAGTCAGTACGAAAGAAGCCCACAGGATACTTCA AATATCGCTTGAAAATGAGATTTGCTTGTCTGATGAACTAGGCAGTGATA TTGACTGTATGAATGGACTTTTATTGTAGAGGGTATGAGGTGTGAACAAT AAACACttcaaaattgaccaaaaaggaCTGTAAACCTAGTTTTAGATCCC AACCAACCTagaatattttttagaaaaagttcttctttaaagcttttttc acatgtacgaaAATTCTACTAAAGACCTTGAAGGGTGGGAATTCacctaa gcttacgtagtgtaTTAAGGCCTTATGTAGAATTTGCTTGcgctcaaaaa gttttgaacggaaggaaaagtcacgtaagaccctcttaatcaacaaaaac tctacataatgtcggggaaattcccaaaagacagccttacgaacaatttt ccgtaaggtcttaaataaaattttacgtacatgtgaaaaaagcttaagtG TCGCAGATTTCTTGGAGTTAAATCTTATCACttcaaattttatataaagT TCATATATTTCGAAGGGgaaattttatttagtatttcaaTTCAGCACAGT CTTTTTAAGAACTTTTGAATCTCCATGATTTCAAACCGGGCGAAAGATTA CTTCGATCTTAATCCTTCTGAATGGAATATAAAATATTATCTCTTGagca ttttgggtttttttttgaaagcatAGTTTTTGTAATTTCAGTATACTCTC CAAGAGGTTTAATGAGATTTCAGGGTTAGGAGAATTATTTCTTAGCCAAT TTAGAAAATTATCAGGTTttaataaaaccttaaaatgtttgCTTTGTATA TAGCCATATTTATATGTCaagacaaattttatttttgttgaaatatttta ggattttttaaaagattgaatGACATAAAATTCACATCAATgtcg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009190TCONS_00009190Clytia hemisphaericatranscript
TCONS_00009191TCONS_00009191Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009191-proteinTCONS_00009191-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:190710..195054 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
CALD1caldesmon isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.05 0.02 0.19 0.14 0.51 0.6 56.44 65.19 13.12 13.29 24.21 19.34 36.06 34.08 24.25 70.23 42.11 44.03 0.15 0.24 27.08 28.19 27.85 25.42 56.97 74.16 4.87 1.33 0.09 0.12