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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012174 ID=TCONS_00012174|Name=TCONS_00012174|organism=Clytia hemisphaerica|type=transcript|length=697bp
CTCGTCTGCCGGCAACTTTGtgtatgttttcaaaaataaagattgCAGTT
CTAGCTGCGTCGAAGTTTCTTTTTTCGCTGGATTCTCCAAACTCAAGGCC
AAAATGGATCCCACCGCAGCTGCTGAGTTGAAGAAGAAGAGAACCTTCAA
AAAGTTCTCATTCCGTGGTGTTGATCTTGATCAACTCTTGGACTTGTCCA
GCGAACAACTCATGGACTTAGTCCATGCCCGTGCCAGAAGGAGATTTGGT
CGTGGATTGAAAATGAAGCCATTGGCTTTGATGAAGAAATTGAGAAAGGC
TAAGAAAGAAGCTGCTCCAATGGAAAAACCAGCTGTCGTCAAAACTCACT
TACGTAACATGATTGTATTACCGGACATGATTGGCAGTATTGTTGGTGTT
CACAATGGAAAAACCTTTAATCAAGTTGAAATCAAGCCTGAGATGATCGG
ACATTACCTCGGAGAATTCTCAATGACATACAAACCTGTTCGTCACGGTC
GACCTGGTATTGGTGCTACTCATTCTTCAAGATTTATCCCATTGAAATAG
ATGGCGATGGTCCACGAAATATATTTGTAAAACCAAAACAGACTGTTTCA
ACTTTATTCTAGGCTTTGTTATATCTCCGACCGTAAGGCCAAAAAGCCTA
TCGTCTAATATTCTGAACGCTTTGCTAGCAACGATATTaataggggg Run BLAST on NCBI transcript from alignment at sc0000141:439563..445485+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012174 ID=TCONS_00012174|Name=TCONS_00012174|organism=Clytia hemisphaerica|type=transcript|length=5923bp|location=Sequence derived from alignment at sc0000141:439563..445485+ (Clytia hemisphaerica)
CTCGTCTGCCGGCAACTTTGtgtatgttttcaaaaataaagattgCAGTT
CTAGCTGCGTCGAAGTTTCTTTTTTCGCTGGATTCTCCAAACTCAAGGCC
AAAATGGTATTTATTTGCTTTCTATCATGATTTATCTCGCTGATCGCTGA
CCTCATGAATACCGATATGGAACCTTGGAGTAACTGGATGGCTTTTGATA
TTGATTATTGCTATTTTTTGATGTTTAGGATCCCACCGCAGCTGCTGAGT
TGAAGAAGAAGAGAACCTTCAAAAAGTTCTCATTCCGTGGTGTTGATCTT
GATCAACTCTTGGACTTGTCCAGCGAACAACTCATGGACTTAGTCCATGC
CCGTGCCAGAAGGAGATTTGGTCGTGGATTGAAAATGAAGCCATTGGCTT
TGATGAAGAAATTGAGAAAGGCTAAGAAAGAAGCTGCTCCAATGGAAAAA
CCAGCTGTCGTCAAAACTCACTTACGTAACATGATTGTATTACCGGACAT
GATTGGCAGTATTGTTGGTGTTCACAATGGAAAAACCTTTAATCAAGTTG
AAATCAAGGTAAAGTAAATTCTTTCCCTGTCAGGCCTAATGGTTTTGGTA
TGAAGATTTTTCAGAGAAGGTGCATCTACTTGATCACAATTAAACGTCGA
GTtaatcaatgtttttggtttttcttaaagatatatataatatataattg
gttatcaaactaatcgaacgtaatcaataacaatcagaagggaggaccct
gccgacgcacagGACACTGGacacgcgaaagtttcttcaccggacttaag
gaagttggatgtccggtgtcggagaaagatattttttcccactGGACGAT
CAAAACACCGggcatgaccagtccggtgtgtccggtgtttcttaattttt
tgtttcataaatgtccggcgtccaacaCCGAACtggtagcgaaaggatac
tttttgcctccggacaaatacaccgaaCAGtctggtgcgtcggcagggtc
ctttgAAGGGTTGTTAAAAGAAAGTGaacgaatactcacaatttttttga
aattttgatactcAAAACTCGATTGTGGAATATATATTGATTAGTACGTA
CCGTCTGGTATGATTAGACCTGACATCTTGGACATGATTTTCAAAGCAAA
TTAACTAGCTTTTCATATGTCTGCCCTATAattcacgtgcgtttgcgtag
ggtaaaattccaaaatgcgaaaatcaattttggcaaaatttttttgaaaa
acgacCCTACAacatttgactatatctttttattccatgaataaggccga
tgaaatttacatatgagtttaccgtcgtgaacttaaccaaaaatagatgc
ggcatgatttcattattcattattttcccaacagcaccttatccaccatt
tctgccaatcatgctctctcaaaataaaaaattttgctttgcttcaaccc
ttcgcatcttttgcgaacgaaaaataaagatcgattgctacagtggtgct
agattttgcaaaataaaatgGCGGTCAGGGCGGTTTGGCAGATATATGGG
CGGGACGCCCACTGCagttgtaggattgagggcggcagcattttctgtaa
taaatcttctttgtttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatttatgaattttga
aaataatgaaattttcatgcgggtgctttttagagatgcgggcggccgac
ggtaaactcatatataaatttcatcggcctaagagataactttcaaataa
aaaatatattgacaatgaatgggtaagctttctagaaatccaaacataaa
ttgcatagcttttaccaacaAATAACACTATAGGAtcaaaaactgtcaaa
aaccagctttttccaattttcttcgagttacaggaattaattccttgttt
gttttgatctgaaattttcagtaggggtggccaacatggttcccttgctc
acaTCAGGGGGGCCCAAgccgggggtaagagaattaaagtttctaaggaa
aatcttaattatcacccaaaaaagttccttttttttgtccatatctttca
aatagatagtcccagccttatccctccttcagtaaagcttcctatacctt
ttgtccttcagaaaaactgaaaatattggccttaattgcttgctttcagt
tcctgtagccagtagtgtgacccgtATTTATATTTCATTCTGCGcgggtt
tttcaatagagatgtcacatgactcaaatcccgcgggagctggaaccgaa
tggaattctctagaattcttATTCTAAAGCAAGATGGCGGCAAGAAAAGc
atgtcttttgctttggacgaaaggttgtaaattttggttgattttaaggt
tttatcttatctcatttactttaattagtagaggcttcttcaatgtttgg
ggaaggtaagtctataaaagttatttgtttttcggtggaaaaagtgttta
aaaaactatttttggtgctcaaggtttatttttctttacaaattttcgcg
ttcccaaaccaaacgcacgtgaatTATAATATCAAACTGTCACTGATAGT
ACAAAAGTGTTGAATCGCACATTTTTGAACTTGTTTTGCCGAAGGATTTA
GGCCTCAATCACAAACAACTTGTGTTTGCGTCGATTTAGGTAAATCAGTC
AGTTGGTagaaaaacattggaaaaatagatttttaattAAACTTTGTGTT
GGGTAGAAATCAAATCtatattaaaaattgaaaataaacagCCCTTTTTT
TTGTGTTTATGTAGATGGTCCTTCACCACAATCTCTTGATTCTGCATCAT
GATACAAGGCGCTTATAACTTTGAGGATgagtttgaatttaaaatacaCT
TTTATACTAAATGCCATGCCCTCGCCTTTTGATTTTCTCTGGAAGCTTAG
AGAATCGcagaatataaaaaaaattgtaagatAAGTTTTCAGGCTTGGTA
ACATTTAAATACACCCTCAAATTGACCTTATTTGTTAGCCACCCAAATAC
AATTTGGGCCTTCAATTGACTAAAGGAATTTTGTAACTGCATTCTGAAGA
TCTCCCTGTAGATGTAGTCAATCAAATATTGTGCTATTAGTCTCAAGGAA
GGTATTTGCCATTACCTTTACTTTTTGAAATGCACAGAGATAAAACTGCA
GTCACTGAAAGCTCAAATATTCTAAATTGTTTGAAGCTTCAAAAGCTGTG
TAACAAAGAGTTGTTTTGTATTTAGTAAATAGTTATCACACGATACCAAG
TACAATATAGGATATAATTTTTAGCTCAGATTTTTCATCGGATTTTCTAA
GCCTTTAGGCGAGAAAAACAAATCCCATACTGTACAAATAAAAGTGTGAT
AACAGGattatcgtcaacttgaaaaatatcaacaaacttttccCTCTCCG
ATTTCGATTCTCTTCGTTGTTTTGCTTTTTCACTTCCTGTATTTTGGTGa
aatcaaacatcaaaacatttgaaCTTTCGAAAATGAATTGAATGGTCATT
GAAGTATCAAAACATTCTTTAGACAACTTTAGTGAGTATTGAGAGAGAGA
AAAGAACATTCCTGAGAATAATTTTGGGATACgataaaaaaaagtaagta
caaaatatgatctctcgcttacctgggggggggggggtcggtagtaaaat
ctcagacatatatgagtacgAATTTTTAcaacctattttttggttgcttt
tcgttgcttgaattttttgtttgcagcaaacaactttccaacaggaaatg
ttttcaaattataaaaattttcagattttttcataaaattaaaataatta
caaaaatagctaatttttccagttttaactacccaggtagtaaaaatttt
tcaacatttaacacatagataccacctatagtcgcgcggctgaggtcgaa
aaaagtggctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNttttgcataaattaatgcagattgtggggaaattccctgttt
tccatcagttttttaccacaaataggccaataaattttgatctagagaag
ttgggactttggtgtgatagacttttttgctcagtttgaagagctctatc
atgtgatataggtctttttttaattcgaagacccccaaaaaatcatgcaa
ttttgcctggaaacgcaaaaaatcgccaattactcgttacttgcacgata
atatcgcggaaactttttgattttgtaatctacacatactaatNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNgtaatctacacatactaattcgcgagtttccgttgttttttttgga
atctaaaagatgtatcacgaaatgaaacgtttttcgacctcagccgcgcg
actactattttagcatttaactaccctgggtagtaaatttTTTCGATTTG
TCACACCACCActgtagtaaacgtcattataaATCCTTTGAGTATTCTTT
AAAAGGTCGAACATTATTTCCTTTATGATAGACTGCATTACTTTTCATCC
TCTTTGATCCTAATACGAAGCGGAATGTAACTTTTNTTATGATAGACTGC
AATACTTTTCATCCTCTTTGATCCTAATACGAAGCGGAATGTAACTTTTG
CAGAGAGCAATCTCAACATCTCAGAAAGCTGCATGCTTTTCAATGTATGT
AGTTTCGTAATGTTTGAGACATCTATCCTTTTTTTCGCGTTTTATATTTC
TAAGAGTTAAGCCTAGGTTTCTTCTAGGAAGATTTAAATGCAAGTTTGGT
TATTGAACacagttctcaacttcagttgacctacaatctgacaatgtctg
tgtgtctgtctatcacaaaaactttagggcagcctggagacttcaaaaat
gcttggattggggacgagttttccgtcaaaacgaggctaacaCTTTAGAG
CAGAGCCTacaaaaatggttggatttggctgaaatttggcacacttgttc
cttgggtgaatatctgggggtccaCAATTgagcctatgaataatttgaag
ccactgaagttgagcccagtgcgttgcgcacgttcgactatttataTATA
AATGTGTTTAAGACAAAGGAAAAAATGCTTGATTTGTGacctttctttat
ttttatttgcagCCTGAGATGATCGGACATTACCTCGGAGAATTCTCAAT
GACATACAAACCTGTTCGTCACGGTCGACCTGGTATTGGTGCTACTCATT
CTTCAAGATTTATCCCATTGAAATAGATGGCGATGGTCCACGAAATATAT
TTGTAAAACCAAAACAGACTGTTTCAACTTTATTCTAGGCTTTGTTATAT
CTCCGACCGTAAGGCCAAAAAGCCTATCGTCTAATATTCTGAACGCTTTG
CTAGCAACGATATTaataggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012174-exon-sc0000141-1491911889:439563..439668 | TCONS_00012174-exon-sc0000141-1491911889:439563..439668 | Clytia hemisphaerica | exon |
| TCONS_00012174-exon-sc0000141-1510915933:439563..439668 | TCONS_00012174-exon-sc0000141-1510915933:439563..439668 | Clytia hemisphaerica | exon |
| TCONS_00012174-exon-sc0000141-1575043694:439563..439668 | TCONS_00012174-exon-sc0000141-1575043694:439563..439668 | Clytia hemisphaerica | exon |
| TCONS_00012174-exon-sc0000141-1491911889:439791..440120 | TCONS_00012174-exon-sc0000141-1491911889:439791..440120 | Clytia hemisphaerica | exon |
| TCONS_00012174-exon-sc0000141-1510915933:439791..440120 | TCONS_00012174-exon-sc0000141-1510915933:439791..440120 | Clytia hemisphaerica | exon |
| TCONS_00012174-exon-sc0000141-1575043694:439791..440120 | TCONS_00012174-exon-sc0000141-1575043694:439791..440120 | Clytia hemisphaerica | exon |
| TCONS_00012174-exon-sc0000141-1491911889:445225..445485 | TCONS_00012174-exon-sc0000141-1491911889:445225..445485 | Clytia hemisphaerica | exon |
| TCONS_00012174-exon-sc0000141-1510915933:445225..445485 | TCONS_00012174-exon-sc0000141-1510915933:445225..445485 | Clytia hemisphaerica | exon |
| TCONS_00012174-exon-sc0000141-1575043694:445225..445485 | TCONS_00012174-exon-sc0000141-1575043694:445225..445485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:439563..445485 + |
Blast
BLAST of TCONS_00012174 vs. Swiss-Prot (Human)
Match: RS15 (40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 9.924e-42 Identity = 63/71 (88.73%), Postives = 71/71 (100.00%), Query Frame = 2
Query: 335 VVKTHLRNMIVLPDMIGSIVGVHNGKTFNQVEIKPEMIGHYLGEFSMTYKPVRHGRPGIGATHSSRFIPLK 547
VVKTHLR+MI+LP+M+GS+VGV+NGKTFNQVEIKPEMIGHYLGEFS+TYKPV+HGRPGIGATHSSRFIPLK
Sbjct: 75 VVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
The following BLAST results are available for this feature:
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