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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012173 ID=TCONS_00012173|Name=TCONS_00012173|organism=Clytia hemisphaerica|type=transcript|length=725bp
TCCACCGCCTCTTCCCGCCTCTAAAAGTCTCGTCTGCCGGCAACTTTGtg
tatgttttcaaaaataaagattgCAGTTCTAGCTGCGTCGAAGTTTCTTT
TTTCGCTGGATTCTCCAAACTCAAGGCCAAAATGGATCCCACCGCAGCTG
CTGAGTTGAAGAAGAAGAGAACCTTCAAAAAGTTCTCATTCCGTGGTGTT
GATCTTGATCAACTCTTGGACTTGTCCAGCGAACAACTCATGGACTTAGT
CCATGCCCGTGCCAGAAGGAGATTTGGTCGTGGATTGAAAATGAAGCCAT
TGGCTTTGATGAAGAAATTGAGAAAGGCTAAGAAAGAAGCTGCTCCAATG
GAAAAACCAGCTGTCGTCAAAACTCACTTACGTAACATGATTGTATTACC
GGACATGATTGGCAGTATTGTTGGTGTTCACAATGGAAAAACCTTTAATC
AAGTTGAAATCAAGCCTGAGATGATCGGACATTACCTCGGAGAATTCTCA
ATGACATACAAACCTGTTCGTCACGGTCGACCTGGTATTGGTGCTACTCA
TTCTTCAAGATTTATCCCATTGAAATAGATGGCGATGGTCCACGAAATAT
ATTTGTAAAACCAAAACAGACTGTTTCAACTTTATTCTAGGCTTTGTTAT
ATCTCCGACCGTAAGGCCAAAAAGCCTATCGTCTAATATTCTGAACGCTT
TGCTAGCAACGATATTaataggggg Run BLAST on NCBI protein sequence of TCONS_00012173-protein >TCONS_00012173-protein ID=TCONS_00012173-protein|Name=TCONS_00012173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
HRLFPPLKVSSAGNFVYVFKNKDCSSSCVEVSFFAGFSKLKAKMDPTAAA
ELKKKRTFKKFSFRGVDLDQLLDLSSEQLMDLVHARARRRFGRGLKMKPL
ALMKKLRKAKKEAAPMEKPAVVKTHLRNMIVLPDMIGSIVGVHNGKTFNQ
VEIKPEMIGHYLGEFSMTYKPVRHGRPGIGATHSSRFIPLK Run BLAST on NCBI transcript from alignment at sc0000141:439318..445485+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012173 ID=TCONS_00012173|Name=TCONS_00012173|organism=Clytia hemisphaerica|type=transcript|length=6168bp|location=Sequence derived from alignment at sc0000141:439318..445485+ (Clytia hemisphaerica)
TCCACCGCCTCTTCCCGCCTCTAAAAGTCTCGTCTGCCGGCAACTTTGtg
tatgttttcaaaaataaagattgCAGTTCTAGCTGCGTCGAAGTTTCTTT
TTTCGCTGGATTCTCCAAACTCAAGGCCAAAATGGTATTTATTTGCTTTC
TATCATGATTTATCTCGCTGATCGCTGAACTCATGAATACTNGGTACGTC
ATTAGGGCGGAGATATATCCACCGCCTCTTCCCGCCTCTAACAGTCTCGT
CTGCCGGCAACTTTGtgtatgttttcaaaaataaagattgCAGTTCTAGC
TGCGTCGAAGTTTCTTTTTTCGCTGGATTCTCCAAACTCAAGGCCAAAAT
GGTATTTATTTGCTTTCTATCATGATTTATCTCGCTGATCGCTGACCTCA
TGAATACCGATATGGAACCTTGGAGTAACTGGATGGCTTTTGATATTGAT
TATTGCTATTTTTTGATGTTTAGGATCCCACCGCAGCTGCTGAGTTGAAG
AAGAAGAGAACCTTCAAAAAGTTCTCATTCCGTGGTGTTGATCTTGATCA
ACTCTTGGACTTGTCCAGCGAACAACTCATGGACTTAGTCCATGCCCGTG
CCAGAAGGAGATTTGGTCGTGGATTGAAAATGAAGCCATTGGCTTTGATG
AAGAAATTGAGAAAGGCTAAGAAAGAAGCTGCTCCAATGGAAAAACCAGC
TGTCGTCAAAACTCACTTACGTAACATGATTGTATTACCGGACATGATTG
GCAGTATTGTTGGTGTTCACAATGGAAAAACCTTTAATCAAGTTGAAATC
AAGGTAAAGTAAATTCTTTCCCTGTCAGGCCTAATGGTTTTGGTATGAAG
ATTTTTCAGAGAAGGTGCATCTACTTGATCACAATTAAACGTCGAGTtaa
tcaatgtttttggtttttcttaaagatatatataatatataattggttat
caaactaatcgaacgtaatcaataacaatcagaagggaggaccctgccga
cgcacagGACACTGGacacgcgaaagtttcttcaccggacttaaggaagt
tggatgtccggtgtcggagaaagatattttttcccactGGACGATCAAAA
CACCGggcatgaccagtccggtgtgtccggtgtttcttaattttttgttt
cataaatgtccggcgtccaacaCCGAACtggtagcgaaaggatacttttt
gcctccggacaaatacaccgaaCAGtctggtgcgtcggcagggtcctttg
AAGGGTTGTTAAAAGAAAGTGaacgaatactcacaatttttttgaaattt
tgatactcAAAACTCGATTGTGGAATATATATTGATTAGTACGTACCGTC
TGGTATGATTAGACCTGACATCTTGGACATGATTTTCAAAGCAAATTAAC
TAGCTTTTCATATGTCTGCCCTATAattcacgtgcgtttgcgtagggtaa
aattccaaaatgcgaaaatcaattttggcaaaatttttttgaaaaacgac
CCTACAacatttgactatatctttttattccatgaataaggccgatgaaa
tttacatatgagtttaccgtcgtgaacttaaccaaaaatagatgcggcat
gatttcattattcattattttcccaacagcaccttatccaccatttctgc
caatcatgctctctcaaaataaaaaattttgctttgcttcaacccttcgc
atcttttgcgaacgaaaaataaagatcgattgctacagtggtgctagatt
ttgcaaaataaaatgGCGGTCAGGGCGGTTTGGCAGATATATGGGCGGGA
CGCCCACTGCagttgtaggattgagggcggcagcattttctgtaataaat
cttctttgtttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatttatgaattttgaaaata
atgaaattttcatgcgggtgctttttagagatgcgggcggccgacggtaa
actcatatataaatttcatcggcctaagagataactttcaaataaaaaat
atattgacaatgaatgggtaagctttctagaaatccaaacataaattgca
tagcttttaccaacaAATAACACTATAGGAtcaaaaactgtcaaaaacca
gctttttccaattttcttcgagttacaggaattaattccttgtttgtttt
gatctgaaattttcagtaggggtggccaacatggttcccttgctcacaTC
AGGGGGGCCCAAgccgggggtaagagaattaaagtttctaaggaaaatct
taattatcacccaaaaaagttccttttttttgtccatatctttcaaatag
atagtcccagccttatccctccttcagtaaagcttcctataccttttgtc
cttcagaaaaactgaaaatattggccttaattgcttgctttcagttcctg
tagccagtagtgtgacccgtATTTATATTTCATTCTGCGcgggtttttca
atagagatgtcacatgactcaaatcccgcgggagctggaaccgaatggaa
ttctctagaattcttATTCTAAAGCAAGATGGCGGCAAGAAAAGcatgtc
ttttgctttggacgaaaggttgtaaattttggttgattttaaggttttat
cttatctcatttactttaattagtagaggcttcttcaatgtttggggaag
gtaagtctataaaagttatttgtttttcggtggaaaaagtgtttaaaaaa
ctatttttggtgctcaaggtttatttttctttacaaattttcgcgttccc
aaaccaaacgcacgtgaatTATAATATCAAACTGTCACTGATAGTACAAA
AGTGTTGAATCGCACATTTTTGAACTTGTTTTGCCGAAGGATTTAGGCCT
CAATCACAAACAACTTGTGTTTGCGTCGATTTAGGTAAATCAGTCAGTTG
GTagaaaaacattggaaaaatagatttttaattAAACTTTGTGTTGGGTA
GAAATCAAATCtatattaaaaattgaaaataaacagCCCTTTTTTTTGTG
TTTATGTAGATGGTCCTTCACCACAATCTCTTGATTCTGCATCATGATAC
AAGGCGCTTATAACTTTGAGGATgagtttgaatttaaaatacaCTTTTAT
ACTAAATGCCATGCCCTCGCCTTTTGATTTTCTCTGGAAGCTTAGAGAAT
CGcagaatataaaaaaaattgtaagatAAGTTTTCAGGCTTGGTAACATT
TAAATACACCCTCAAATTGACCTTATTTGTTAGCCACCCAAATACAATTT
GGGCCTTCAATTGACTAAAGGAATTTTGTAACTGCATTCTGAAGATCTCC
CTGTAGATGTAGTCAATCAAATATTGTGCTATTAGTCTCAAGGAAGGTAT
TTGCCATTACCTTTACTTTTTGAAATGCACAGAGATAAAACTGCAGTCAC
TGAAAGCTCAAATATTCTAAATTGTTTGAAGCTTCAAAAGCTGTGTAACA
AAGAGTTGTTTTGTATTTAGTAAATAGTTATCACACGATACCAAGTACAA
TATAGGATATAATTTTTAGCTCAGATTTTTCATCGGATTTTCTAAGCCTT
TAGGCGAGAAAAACAAATCCCATACTGTACAAATAAAAGTGTGATAACAG
GattatcgtcaacttgaaaaatatcaacaaacttttccCTCTCCGATTTC
GATTCTCTTCGTTGTTTTGCTTTTTCACTTCCTGTATTTTGGTGaaatca
aacatcaaaacatttgaaCTTTCGAAAATGAATTGAATGGTCATTGAAGT
ATCAAAACATTCTTTAGACAACTTTAGTGAGTATTGAGAGAGAGAAAAGA
ACATTCCTGAGAATAATTTTGGGATACgataaaaaaaagtaagtacaaaa
tatgatctctcgcttacctgggggggggggggtcggtagtaaaatctcag
acatatatgagtacgAATTTTTAcaacctattttttggttgcttttcgtt
gcttgaattttttgtttgcagcaaacaactttccaacaggaaatgttttc
aaattataaaaattttcagattttttcataaaattaaaataattacaaaa
atagctaatttttccagttttaactacccaggtagtaaaaatttttcaac
atttaacacatagataccacctatagtcgcgcggctgaggtcgaaaaaag
tggctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNttttgcataaattaatgcagattgtggggaaattccctgttttccat
cagttttttaccacaaataggccaataaattttgatctagagaagttggg
actttggtgtgatagacttttttgctcagtttgaagagctctatcatgtg
atataggtctttttttaattcgaagacccccaaaaaatcatgcaattttg
cctggaaacgcaaaaaatcgccaattactcgttacttgcacgataatatc
gcggaaactttttgattttgtaatctacacatactaatNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNg
taatctacacatactaattcgcgagtttccgttgttttttttggaatcta
aaagatgtatcacgaaatgaaacgtttttcgacctcagccgcgcgactac
tattttagcatttaactaccctgggtagtaaatttTTTCGATTTGTCACA
CCACCActgtagtaaacgtcattataaATCCTTTGAGTATTCTTTAAAAG
GTCGAACATTATTTCCTTTATGATAGACTGCATTACTTTTCATCCTCTTT
GATCCTAATACGAAGCGGAATGTAACTTTTNTTATGATAGACTGCAATAC
TTTTCATCCTCTTTGATCCTAATACGAAGCGGAATGTAACTTTTGCAGAG
AGCAATCTCAACATCTCAGAAAGCTGCATGCTTTTCAATGTATGTAGTTT
CGTAATGTTTGAGACATCTATCCTTTTTTTCGCGTTTTATATTTCTAAGA
GTTAAGCCTAGGTTTCTTCTAGGAAGATTTAAATGCAAGTTTGGTTATTG
AACacagttctcaacttcagttgacctacaatctgacaatgtctgtgtgt
ctgtctatcacaaaaactttagggcagcctggagacttcaaaaatgcttg
gattggggacgagttttccgtcaaaacgaggctaacaCTTTAGAGCAGAG
CCTacaaaaatggttggatttggctgaaatttggcacacttgttccttgg
gtgaatatctgggggtccaCAATTgagcctatgaataatttgaagccact
gaagttgagcccagtgcgttgcgcacgttcgactatttataTATAAATGT
GTTTAAGACAAAGGAAAAAATGCTTGATTTGTGacctttctttattttta
tttgcagCCTGAGATGATCGGACATTACCTCGGAGAATTCTCAATGACAT
ACAAACCTGTTCGTCACGGTCGACCTGGTATTGGTGCTACTCATTCTTCA
AGATTTATCCCATTGAAATAGATGGCGATGGTCCACGAAATATATTTGTA
AAACCAAAACAGACTGTTTCAACTTTATTCTAGGCTTTGTTATATCTCCG
ACCGTAAGGCCAAAAAGCCTATCGTCTAATATTCTGAACGCTTTGCTAGC
AACGATATTaataggggg Coding sequence (CDS) from alignment at sc0000141:439318..445485+ >TCONS_00012173 ID=TCONS_00012173|Name=TCONS_00012173|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at sc0000141:439318..445485+ (Clytia hemisphaerica)
CACCGCCTCTTCCCGCCTCTAAAAGTCTCGTCTGCCGGCAACTTTGtgta
tgttttcaaaaataaagattgCAGTTCTAGCTGCGTCGAAGTTTCTTTTT
TCGCTGGATTCTCCAAACTCAAGGCCAAAATGGATCCCACCGCAGCTGCT
GAGTTGAAGAAGAAGAGAACCTTCAAAAAGTTCTCATTCCGTGGTGTTGA
TCTTGATCAACTCTTGGACTTGTCCAGCGAACAACTCATGGACTTAGTCC
ATGCCCGTGCCAGAAGGAGATTTGGTCGTGGATTGAAAATGAAGCCATTG
GCTTTGATGAAGAAATTGAGAAAGGCTAAGAAAGAAGCTGCTCCAATGGA
AAAACCAGCTGTCGTCAAAACTCACTTACGTAACATGATTGTATTACCGG
ACATGATTGGCAGTATTGTTGGTGTTCACAATGGAAAAACCTTTAATCAA
GTTGAAATCAAGCCTGAGATGATCGGACATTACCTCGGAGAATTCTCAAT
GACATACAAACCTGTTCGTCACGGTCGACCTGGTATTGGTGCTACTCATT
CTTCAAGATTTATCCCATTGAAATAGCACCGCCTCTTCCCGCCTCTAAAA
GTCTCGTCTGCCGGCAACTTTGtgtatgttttcaaaaataaagattgCAG
TTCTAGCTGCGTCGAAGTTTCTTTTTTCGCTGGATTCTCCAAACTCAAGG
CCAAAATGGATCCCACCGCAGCTGCTGAGTTGAAGAAGAAGAGAACCTTC
AAAAAGTTCTCATTCCGTGGTGTTGATCTTGATCAACTCTTGGACTTGTC
CAGCGAACAACTCATGGACTTAGTCCATGCCCGTGCCAGAAGGAGATTTG
GTCGTGGATTGAAAATGAAGCCATTGGCTTTGATGAAGAAATTGAGAAAG
GCTAAGAAAGAAGCTGCTCCAATGGAAAAACCAGCTGTCGTCAAAACTCA
CTTACGTAACATGATTGTATTACCGGACATGATTGGCAGTATTGTTGGTG
TTCACAATGGAAAAACCTTTAATCAAGTTGAAATCAAGCCTGAGATGATC
GGACATTACCTCGGAGAATTCTCAATGACATACAAACCTGTTCGTCACGG
TCGACCTGGTATTGGTGCTACTCATTCTTCAAGATTTATCCCATTGAAAT
AGCACCGCCTCTTCCCGCCTCTAAAAGTCTCGTCTGCCGGCAACTTTGtg
tatgttttcaaaaataaagattgCAGTTCTAGCTGCGTCGAAGTTTCTTT
TTTCGCTGGATTCTCCAAACTCAAGGCCAAAATGGATCCCACCGCAGCTG
CTGAGTTGAAGAAGAAGAGAACCTTCAAAAAGTTCTCATTCCGTGGTGTT
GATCTTGATCAACTCTTGGACTTGTCCAGCGAACAACTCATGGACTTAGT
CCATGCCCGTGCCAGAAGGAGATTTGGTCGTGGATTGAAAATGAAGCCAT
TGGCTTTGATGAAGAAATTGAGAAAGGCTAAGAAAGAAGCTGCTCCAATG
GAAAAACCAGCTGTCGTCAAAACTCACTTACGTAACATGATTGTATTACC
GGACATGATTGGCAGTATTGTTGGTGTTCACAATGGAAAAACCTTTAATC
AAGTTGAAATCAAGCCTGAGATGATCGGACATTACCTCGGAGAATTCTCA
ATGACATACAAACCTGTTCGTCACGGTCGACCTGGTATTGGTGCTACTCA
TTCTTCAAGATTTATCCCATTGAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012173-exon-sc0000141-1491911889:439318..439451 | TCONS_00012173-exon-sc0000141-1491911889:439318..439451 | Clytia hemisphaerica | exon |
| TCONS_00012173-exon-sc0000141-1510915933:439318..439451 | TCONS_00012173-exon-sc0000141-1510915933:439318..439451 | Clytia hemisphaerica | exon |
| TCONS_00012173-exon-sc0000141-1575043694:439318..439451 | TCONS_00012173-exon-sc0000141-1575043694:439318..439451 | Clytia hemisphaerica | exon |
| TCONS_00012173-exon-sc0000141-1491911889:439791..440120 | TCONS_00012173-exon-sc0000141-1491911889:439791..440120 | Clytia hemisphaerica | exon |
| TCONS_00012173-exon-sc0000141-1510915933:439791..440120 | TCONS_00012173-exon-sc0000141-1510915933:439791..440120 | Clytia hemisphaerica | exon |
| TCONS_00012173-exon-sc0000141-1575043694:439791..440120 | TCONS_00012173-exon-sc0000141-1575043694:439791..440120 | Clytia hemisphaerica | exon |
| TCONS_00012173-exon-sc0000141-1491911889:445225..445485 | TCONS_00012173-exon-sc0000141-1491911889:445225..445485 | Clytia hemisphaerica | exon |
| TCONS_00012173-exon-sc0000141-1510915933:445225..445485 | TCONS_00012173-exon-sc0000141-1510915933:445225..445485 | Clytia hemisphaerica | exon |
| TCONS_00012173-exon-sc0000141-1575043694:445225..445485 | TCONS_00012173-exon-sc0000141-1575043694:445225..445485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:439318..445485 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
| GO:0015935 | small ribosomal subunit |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
| GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005840 |
ribosome |
| cellular_component |
GO:0015935 |
small ribosomal subunit |
| molecular_function |
GO:0003723 |
RNA binding |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00012173 vs. Swiss-Prot (Human)
Match: RS15 (40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 2.417e-41 Identity = 63/71 (88.73%), Postives = 71/71 (100.00%), Query Frame = 3
Query: 363 VVKTHLRNMIVLPDMIGSIVGVHNGKTFNQVEIKPEMIGHYLGEFSMTYKPVRHGRPGIGATHSSRFIPLK 575
VVKTHLR+MI+LP+M+GS+VGV+NGKTFNQVEIKPEMIGHYLGEFS+TYKPV+HGRPGIGATHSSRFIPLK
Sbjct: 75 VVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
The following BLAST results are available for this feature:
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