XLOC_002440 (gene) - C. hemisphaerica

Overview
NameXLOC_002440
Unique NameXLOC_002440
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000044:338050..341837+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002440 ID=XLOC_002440|Name=XLOC_002440|organism=Clytia hemisphaerica|type=gene|length=3788bp|location=Sequence derived from alignment at sc0000044:338050..341837+ (Clytia hemisphaerica)
GAAGAACTTAATGATAAATATTTGCTGTGGCCTTGACTTAAGCTAACAGA
GAGTAAGCCGTTTTTTCGATTCAATTTAAATACACTCGTGTCTCTCGACA
GAAAAAATGATAACAATAGACTGAGGAACAGCCTACATTaagtaaatatt
tcaaataaattcTAACCACCTTTCCTCTAGACAATTTTGATATCGgtaat
tcaatttttgaacgATTCATTAAAGATGAAACTTTCTACGAAAATGATGT
TGAAAAGCCTGACAATCCTATTGTTGTATCTGGTGGTTATATCGGAGGCT
GCTGACCCAAAGTGTAAGTAGAAACCCCTTTAAAACCTTTACAGCTGAAC
GAGTCtgtccaaattttttctttttatttaacgCTGTGCTGAAATGGAAC
GCCAAACCTTTTCTCAGCTCCAAGTAACTTACCACATAGTTCAGATTACC
CATCTAAGCCATTCGCGGAAGTGGCAGTGACTGGGAATCGTACCTATATC
CCTTTGACATACTTACAAATGCTCTACCAACAATATTAGAGAGCAGCAAT
TGCCGGACTGTAGAGGGAGACCTAGGTTCCAGACCTAGGTCGAAGGATGG
GAACCTTGTGGTAATCTTGAAGTTAAATGTACATTTATTACAGTGGAGTC
TTCACCCgggatttttgctgaaaaagtgaccgttagagagactttttgaa
ttttttttttcgatttttgaaaaaagtcatacccttagagagactttatt
acaattttttctctggaaaccaaaaaatttcctaaaagtcctgaattttc
cgacccttagagagactaatttaaaactttctgatttttccgacccttag
agagactttgaaaagtgaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGGAGTCTTCATCACTCGAACACTCACAGAGA
ACACAAATATGTTCGAGCTAATGGAATTTTgagttatagagtaaggttta
taaggtattgttaactgaagggatcacTAAACTTGTTCGAGTAAAGGAGC
AGACATTTGAGTTGTCCAGGttagagttaaagagactcaactgtatttTA
TTCTTGTTTTTTAAGGTTGCATTGACTTGCATGGAGGTTGCTCTGAAATA
GCAAGTTGGATGTGTGATCATCAAGGCATCAAACCCATATGTCCAGCCAC
CTGCAAACTATGTCATGTTTCTGCTCCACGTAAGAACTTTAAAGTCCACT
ATTTTATCATAAACGTGTTGTCGAGAGCTAGACTCGAAGCTTTTGGGAAG
GAAATCCTGGGGGGGGGCTCTCAAGCAATGTTTTGCCACCTGTCTTAAGC
AATGATTTGATATTTTGTGTTTCTTCTGAAATTATCAGAAATTATCATAA
ATTTATTTCTACCTGGCTAGCTTATCAAAACAATCGAATCACAACATCAA
AGAGGAAAGTGGATACTGTTAAAAGTAAGTTCCAATTGATATTTGGATAG
TACGAAATATTATTATAACGACCTCTGCCCGATGTGGATTCGTAGTCGTT
CTATTTGATTCGGAGAACTATTACTTCAAAAATCTAGTGAAATAGATCAA
ATTACAAAGTGCCCGATTTCGAGAGAAAATGTCAAGAAATAAAAGGCTAC
ctgaaaggaagaaattttggtgggaatttaatttgacagatggcttgaaa
atcaaatcttgcgggaatttaatttggcggatgaagaATACTTTTGACCA
AAAAACCCTATTGAATAAGAAAAGAACTTGTTTCAAAGTCTGCAATAGCA
TACATTTTGGGAATGAATACAATAATTTGAATTTAGCGGATggcaaaaga
aatcaaattcgGCGAGAAtctaatttggcggatttttgCCAAAtccgcta
aaatttcttcctttaaggtaactTACAATTGCTACGTTGTAAGACAATGC
AGTAAATTGCAGATTTTATTCCAAGAATCTAGCATGCATGCAAGTTTTCA
TACCACGTTCGCTAACAAACTCAAGTGACTTAATTAAGTACGTTTATATA
AAACCCTCGGGATAACTAGGCAACATTGTATGTGGTTTGGGCATCACCTT
AATAGTGCCTTTTTAGGACCTTCAAAATCCCAAAGGGGtaaaattcaaaa
ggttataTTTTGGAAAGAGCCTCCGGTAACAAAAATTCCTCTCCTCTCAC
TTCCCTGAGAGAAAAAGGTTACCTAATTTTCTTTTAGGGTTATGTGCTAG
TGAACAGAACAAGTATGCTGGTGTTAATCTTGAGTTTCATTATCGGATGT
CATACTATGCACAACTTTACGCTGAATATATGGTCAAAAACGGATTGACC
AGCAAACATGATTGTATGAAACGATTCAACTTTCCTGGTTTAACAACAAT
GGTTGGCAATCTGAATGCTTTTCAGGAAGATCAAGACTTGGGGAAAGCTC
TTAAATTATCCATCAAAGCCTGGTAAGGAGAATTAgattttaattatttt
ggcGGAGGTATCTTGGTTATTCAGGAAAAAGAATTAAGGAGTCCCCCCCT
CCGGGTGCGTTTCGTGTCCAAATTAAggtaaaaaactataagaatttcca
aaatttaacccataaaacatttttttcactttttacacccttagagaaCC
TATTCTCTCATCTCTGTTCATTTCTACCCTTACGGCAACCTGAAAATCAC
ACCCTTAAGGGCCTCTCATACGGTAGCTCGTTAACCTGGAGTGTCCCCTT
TTATTATTAAGTTCCTCTGGGTTTTTCTCCATTTCACAGAGACCCCTTGG
GTTGTTATCTGAAATTCCATATTGACTATCCCTGAATTCTCAAGATTTTT
GCGGCAGCCTCTGGATGGAAAATGACTTCCCCATGAGGGTAAATTATTCA
TCTGAAATAGCCCATTGAAAAGAATGTCCCATGCCATTTCTGTTGAAAAT
GTAGCCTTGAAGCTGAGCTTAAATACAAATCCTTGACAATATATTTAAGA
AAGCGGTCTAAGGAATAACAATGGGACTGTTTTGATTACTTATCTTTGTG
ACCAAAAtagtagacgatgttatcgtccgttacagtgatagtaaaggcgg
gaaaatatggcggtatggcgttatggcggtatacgggaactcttttcggc
aaaaaaacccgtttgcgaattttcttcggctttgggcttttttcttagat
agtgattcgtcttagactataacatagtctaccAAAATAGTTGAGAATAG
TGAGCCTATATTTGTAGATTCTTTCGAAAATggtttactcattttttttc
ttcaaggtATAATTCTGGTTCTAACATGAAAAACGCGATGACTGACAGTC
AATACGTTGGATGTGGTGCAGCTTCGAATGGGAAAATTACCAGAGTTGTG
TCATGgtatggtaatgcccaaaaatgAAGAACCACAAAgattattgatat
ttttaggaaatagtTTATGTTATTTTCAAACATGTTGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004364TCONS_00004364Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004364-proteinTCONS_00004364-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:338050..341837 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68	3.21	2.22	1.65	0.35	0.22	0.73	0.25	0.95	0.43	0.89	1.47	4.52	2.63	50	59.74	2.32	3.05	7.66	8.59	0.2	0.29	1.3	0.7	1.05	0.99	0.07	0	0.63	0.99