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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012168 ID=TCONS_00012168|Name=TCONS_00012168|organism=Clytia hemisphaerica|type=transcript|length=3092bp
GCTAGGATAAAGTAGAATGCGTAATGTTTTCGACAAATTAAATTCCCcct
aaattttacgaaattgatccatccccaaattaaatccacgccaaaattaa
tccacttaaggtaaaatgcttcattttgttaaaaataaacTACCTGGAGA
CATTCATTCTATGGCATAAAGTAGGTCCTTATCGTAATATCCTGTgttaa
aattcaaatatttctgTTTACCCTCTTACATTACAACGTACACTAATGTT
ACAAAAGGAAatttacaatacaatacaatcacgtttttctttttctcgaa
GATGCTCGGGAAGTCCACCCAATCGATTTATACAAAACTCGATATCTCGA
TCAATATCGATCTCAACCCCATTTAATTTCAATGTTTCAgcattcatttt
cttttgaattttttttacgaCAAAAAGAATAGTCAAAGCTTGTTCATGTT
CTTGACGTAATTTCAAATGCTTCACCATGAATAATGCCTCTCTTAAATCA
TTTGGATGATACTGTCTCTTTAGCTTTTTGAAgagctttttcgaatgttt
tgaggcttctttgaaatcattttcacgAATGAAACAACAAATATAAAGTA
TTCTGCTTCGGAATTTCGTTCTCGTTGGATTAAGATGGTTGCTCAGATAA
TTTATACTTGGACCAATAGAATGCAAGAATCGCTCTTTAACGAAATCAAT
AGTTTCAACTTCGTTCAGAatcaacattttacaaaaactGTCGAGATATG
TAAAGTAAGGTGTCCCTGGTGCAGATTGACGGAATCTCTGGTAAATCTCT
CCACATTCTTCGTATGCTCCTGTATCGAAAAGAGCACGACCGACTTCAGA
TAAAGTGATGTCTTCTTCATATGATTCTTGATCAGTCAAAGCGTTGAAAA
TCTTTAAACCTTTCTCCCTCATTCCATTCAGTATCAATAAACACGCAATC
AACGTTTTACAAGTATACGTTATATATTTCAAGTCTGAATATTTCTTTAT
CAACTGTAATCCAGCATCGTAGTTTCCGAGTTCTTTATAAGAAAGAGCAA
GCTTGAATGTTTCATCAAAATTCAACGTTTGTTGCGATTGTAATCGACTT
TGATGCTCTTCAAAATCACCATCAAAAAGGATAGCTGCAGAGTAACGGTA
ATCAATACCTTCTAAATCTTCCTGAATATTCTGgattagtttttcttttt
caggagATTCCTCTACAACATTCGTCTTTACTTCCTTCAACAGTTTTTTC
AGACGATCATCCATACAATATTTTATCCAGTAGACAGTGATGTCAGTTTT
GTGGTGTGATCGTACCTCATAACTTTCTTTAACGAGGTGTTCCCTTAAAT
TTCCGTATCCTGTTCTACTGAGGTACACGTAAATATCCCGAATTCTGTTA
TCAATGATATCGATGaaaattgttttatattttggtTCCTTCCAAAGATG
ATAGAGGTGAGGAGCCCAAAGAACTGCGAGCTTATTGCTATCTTCGTCAT
CAATGCAATCAACAATCGTTTCATAAAACTTTTTGATCGCTTCAAATTCC
ATGTTCTTTTCGAAAAGATAATGTTGGATTGATTTTTGGTAAAGGGAATG
CACCGTCCAAAATTTTTCAGGTGCTGCATGCGTCAATTCTTGAAACCTTT
GATTGCATTTGATCATGGAATAATCTAACAAAAGTTTTTTGGCTTTCGTA
TATTCAAGTTTGTTCTCAAAGCAATGTTCAAGGAAAAGTTCGTCGATAAA
ACTACCATCAAATAATCCGATTAAATATAGGAAAGACATTATCGAATGGT
CGTTAGATTGTTCGATTCTTTTGATGGTGAtttgaaaagatgaaaaaacg
GACGATCGAACTCCATAATGGGTGACAGCTTGTTGTGATAAAGTATCGAG
CTTGTAATCTTGAAGAAGCTGGAGGTAGTCTTTCAAAGAGGTTTGTGATT
GTTTGACGTACGCTACTACATGACTAATAGCTAATGGATGGAAATCTAAT
TCTTCAATCAAATCTTTAAATAAATGTTTCTCATCCTTCAGATTGTTCTC
GACGAATTTGTAAGCAGTTTGTTCAGGCCATGTTTCCATTTTTAAATGTT
CGTAATTGTTGGTCCAATTACCAAGCTGTGTGGTGATGATGGTTTTTTGA
CCAAGTTGTAAAACATCTGATAACTGGTTGATATCAGTGCAGTTATCAAA
GACAAAAAGTGTCTCCTCGTTTTTGAAATAGTCATGAAGCATGTGTGAAA
TATCCTTGGTATTCGATTTTCCTGGGAAACCGAGAATTTGAGCTATATTG
GTGTAAGTTGTGTCAATAGATTCAGCATTAACCCACAAAATGGTATTATA
TCTGGCAGCATAATCAGTGATATACTTCCTTGCTAATTCTGATTTTCCGA
GACCTGGAATCCCTGAAATAACCGTGGCTAGTTTATTTCCGGTAACGAGA
GATTGGTGAATTGTGTTCAATTCATTTTCACGACCAACGAAGTTTGGGTT
TTCGATTGGAAGCTGATAAATAAAAGTTGGTGACAGAGGCTTCAAATCTT
GTGGAGGACATCCTAGGGCGATTAAAGGTTTACTCATACGATTGTAGATT
CTCTTATATTCTGCTTTGGTAATCTGTCGGTTTGCTTTATGGTTAAGTTG
GTTGCGTTCAATCTTTAGAATGATACAATATGCGATGTCTGAAGTATCGG
TAGGGTCTGGTTCCGCATCCCAACCTGTCCGTGGTTTTTGATATCCGCAT
AAAGTACGGATCATAAAGAACGTTAAAGTGACGTCGAAAAGTGAGGAGTC
GGTTCTCTGACATGCTGTATAAATCAAATCGTATTGATCTTGTTTCAAAA
TCCGTTGATTAAGAAGTTGTTTCAATTTCCTTTGGTGTGGTAACAAAGCA
TTGTATAAATCAACTGGATTGCGTGGAAAATGTTTGTGAAAAACATCGAG
GAGGTATTGTTGAGATTTTTCTTCGAGAATATCAACATTATGACGATTCT
TGTGTTCTTGTGTGAAATATTTGACTGGTGAAGTTTGTGTTCCTGATGCG
GCTGTTGCCATTTCCTAACGTTCGCTACTTcatgaaaaattt Run BLAST on NCBI transcript from alignment at sc0000141:289553..292644+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012168 ID=TCONS_00012168|Name=TCONS_00012168|organism=Clytia hemisphaerica|type=transcript|length=3092bp|location=Sequence derived from alignment at sc0000141:289553..292644+ (Clytia hemisphaerica)
GCTAGGATAAAGTAGAATGCGTAATGTTTTCGACAAATTAAATTCCCcct
aaattttacgaaattgatccatccccaaattaaatccacgccaaaattaa
tccacttaaggtaaaatgcttcattttgttaaaaataaacTACCTGGAGA
CATTCATTCTATGGCATAAAGTAGGTCCTTATCGTAATATCCTGTgttaa
aattcaaatatttctgTTTACCCTCTTACATTACAACGTACACTAATGTT
ACAAAAGGAAatttacaatacaatacaatcacgtttttctttttctcgaa
GATGCTCGGGAAGTCCACCCAATCGATTTATACAAAACTCGATATCTCGA
TCAATATCGATCTCAACCCCATTTAATTTCAATGTTTCAgcattcatttt
cttttgaattttttttacgaCAAAAAGAATAGTCAAAGCTTGTTCATGTT
CTTGACGTAATTTCAAATGCTTCACCATGAATAATGCCTCTCTTAAATCA
TTTGGATGATACTGTCTCTTTAGCTTTTTGAAgagctttttcgaatgttt
tgaggcttctttgaaatcattttcacgAATGAAACAACAAATATAAAGTA
TTCTGCTTCGGAATTTCGTTCTCGTTGGATTAAGATGGTTGCTCAGATAA
TTTATACTTGGACCAATAGAATGCAAGAATCGCTCTTTAACGAAATCAAT
AGTTTCAACTTCGTTCAGAatcaacattttacaaaaactGTCGAGATATG
TAAAGTAAGGTGTCCCTGGTGCAGATTGACGGAATCTCTGGTAAATCTCT
CCACATTCTTCGTATGCTCCTGTATCGAAAAGAGCACGACCGACTTCAGA
TAAAGTGATGTCTTCTTCATATGATTCTTGATCAGTCAAAGCGTTGAAAA
TCTTTAAACCTTTCTCCCTCATTCCATTCAGTATCAATAAACACGCAATC
AACGTTTTACAAGTATACGTTATATATTTCAAGTCTGAATATTTCTTTAT
CAACTGTAATCCAGCATCGTAGTTTCCGAGTTCTTTATAAGAAAGAGCAA
GCTTGAATGTTTCATCAAAATTCAACGTTTGTTGCGATTGTAATCGACTT
TGATGCTCTTCAAAATCACCATCAAAAAGGATAGCTGCAGAGTAACGGTA
ATCAATACCTTCTAAATCTTCCTGAATATTCTGgattagtttttcttttt
caggagATTCCTCTACAACATTCGTCTTTACTTCCTTCAACAGTTTTTTC
AGACGATCATCCATACAATATTTTATCCAGTAGACAGTGATGTCAGTTTT
GTGGTGTGATCGTACCTCATAACTTTCTTTAACGAGGTGTTCCCTTAAAT
TTCCGTATCCTGTTCTACTGAGGTACACGTAAATATCCCGAATTCTGTTA
TCAATGATATCGATGaaaattgttttatattttggtTCCTTCCAAAGATG
ATAGAGGTGAGGAGCCCAAAGAACTGCGAGCTTATTGCTATCTTCGTCAT
CAATGCAATCAACAATCGTTTCATAAAACTTTTTGATCGCTTCAAATTCC
ATGTTCTTTTCGAAAAGATAATGTTGGATTGATTTTTGGTAAAGGGAATG
CACCGTCCAAAATTTTTCAGGTGCTGCATGCGTCAATTCTTGAAACCTTT
GATTGCATTTGATCATGGAATAATCTAACAAAAGTTTTTTGGCTTTCGTA
TATTCAAGTTTGTTCTCAAAGCAATGTTCAAGGAAAAGTTCGTCGATAAA
ACTACCATCAAATAATCCGATTAAATATAGGAAAGACATTATCGAATGGT
CGTTAGATTGTTCGATTCTTTTGATGGTGAtttgaaaagatgaaaaaacg
GACGATCGAACTCCATAATGGGTGACAGCTTGTTGTGATAAAGTATCGAG
CTTGTAATCTTGAAGAAGCTGGAGGTAGTCTTTCAAAGAGGTTTGTGATT
GTTTGACGTACGCTACTACATGACTAATAGCTAATGGATGGAAATCTAAT
TCTTCAATCAAATCTTTAAATAAATGTTTCTCATCCTTCAGATTGTTCTC
GACGAATTTGTAAGCAGTTTGTTCAGGCCATGTTTCCATTTTTAAATGTT
CGTAATTGTTGGTCCAATTACCAAGCTGTGTGGTGATGATGGTTTTTTGA
CCAAGTTGTAAAACATCTGATAACTGGTTGATATCAGTGCAGTTATCAAA
GACAAAAAGTGTCTCCTCGTTTTTGAAATAGTCATGAAGCATGTGTGAAA
TATCCTTGGTATTCGATTTTCCTGGGAAACCGAGAATTTGAGCTATATTG
GTGTAAGTTGTGTCAATAGATTCAGCATTAACCCACAAAATGGTATTATA
TCTGGCAGCATAATCAGTGATATACTTCCTTGCTAATTCTGATTTTCCGA
GACCTGGAATCCCTGAAATAACCGTGGCTAGTTTATTTCCGGTAACGAGA
GATTGGTGAATTGTGTTCAATTCATTTTCACGACCAACGAAGTTTGGGTT
TTCGATTGGAAGCTGATAAATAAAAGTTGGTGACAGAGGCTTCAAATCTT
GTGGAGGACATCCTAGGGCGATTAAAGGTTTACTCATACGATTGTAGATT
CTCTTATATTCTGCTTTGGTAATCTGTCGGTTTGCTTTATGGTTAAGTTG
GTTGCGTTCAATCTTTAGAATGATACAATATGCGATGTCTGAAGTATCGG
TAGGGTCTGGTTCCGCATCCCAACCTGTCCGTGGTTTTTGATATCCGCAT
AAAGTACGGATCATAAAGAACGTTAAAGTGACGTCGAAAAGTGAGGAGTC
GGTTCTCTGACATGCTGTATAAATCAAATCGTATTGATCTTGTTTCAAAA
TCCGTTGATTAAGAAGTTGTTTCAATTTCCTTTGGTGTGGTAACAAAGCA
TTGTATAAATCAACTGGATTGCGTGGAAAATGTTTGTGAAAAACATCGAG
GAGGTATTGTTGAGATTTTTCTTCGAGAATATCAACATTATGACGATTCT
TGTGTTCTTGTGTGAAATATTTGACTGGTGAAGTTTGTGTTCCTGATGCG
GCTGTTGCCATTTCCTAACGTTCGCTACTTcatgaaaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012168-exon-sc0000141-1491911889:289553..292644 | TCONS_00012168-exon-sc0000141-1491911889:289553..292644 | Clytia hemisphaerica | exon |
| TCONS_00012168-exon-sc0000141-1510915933:289553..292644 | TCONS_00012168-exon-sc0000141-1510915933:289553..292644 | Clytia hemisphaerica | exon |
| TCONS_00012168-exon-sc0000141-1575043694:289553..292644 | TCONS_00012168-exon-sc0000141-1575043694:289553..292644 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:289553..292644 + |
Blast
The following BLAST results are available for this feature:
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