|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012200 ID=TCONS_00012200|Name=TCONS_00012200|organism=Clytia hemisphaerica|type=transcript|length=4681bpRun BLAST on NCBI transcript from alignment at sc0000141:201602..221951- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012200 ID=TCONS_00012200|Name=TCONS_00012200|organism=Clytia hemisphaerica|type=transcript|length=20350bp|location=Sequence derived from alignment at sc0000141:201602..221951- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012200 vs. Swiss-Prot (Human)
Match: TLE4 (Transducin-like enhancer protein 4 OS=Homo sapiens GN=TLE4 PE=1 SV=3) HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0 Identity = 296/364 (81.32%), Postives = 323/364 (88.74%), Query Frame = 2
Query: 1625 GRDSLHYNSRPGMPVFEGTRGMLPSF-GIPSGKPAYSFHMSGDGQLQPVPFPPDALLGPSIPRHARQLSTLNHGEVVCAVTVSNPTRHVYTGGKGCVKVWDINQALNQSTITKPVSTLECL-RDIYIRSCKLLPDGRTLIVGGEASVVTIWDLAASTPRIKAELNSNAPACYALAISPDSKVCFSCCSDGNIAVLDLHNQTIVQQFQGHTDGASCIDISPDGTKLWTGGLDNTVRSWDLRQGVQLQQHNFQSQIFSLGYCPTGDWLAVGMESSHVEVLHVNKPDKYQLHLHDSCVLSLKYATSGKWFISTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATLYEVIY 2710
G D H+ P +P P+ GIP GKPAYSFH+S DGQ+QPVPFPPDAL+GP IPRHARQ++TLNHGEVVCAVT+SNPTRHVYTGGKGCVKVWDI+ N+S PVS L+CL RD YIRSC+LLPDGRTLIVGGEAS ++IWDLAA TPRIKAEL S+APACYALAISPDSKVCFSCCSDGNIAV DLHNQT+V+QFQGHTDGASCIDIS DGTKLWTGGLDNTVRSWDLR+G QLQQH+F SQIFSLGYCPTG+WLAVGME+S+VEVLHV KPDKYQLHLH+SCVLSLK+A GKWF+STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKAT+YEVIY
Sbjct: 423 GFDPHHHMRVPAIP---------PNLTGIPGGKPAYSFHVSADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS----PVSQLDCLNRDNYIRSCRLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMENSNVEVLHVTKPDKYQLHLHESCVLSLKFAHCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 773 HSP 2 Score: 204.527 bits (519), Expect = 5.002e-54 Identity = 102/155 (65.81%), Postives = 121/155 (78.06%), Query Frame = 2
Query: 248 MYQNGHTMYPQGRHANFGKWNMGDERQKTPSQPSGQPYPKFSVTEACDRIKEEVSYLQAQTHSLKLEIEKLASDKTDMQRAYVMYYEMSYGLNVEMHKQTEIAKRLNAICNQLLPFLSQEHQQQVMQAIDRAKQVTMSELNAIIGQQLHSQGLPH 712
M ++ MYPQ RH P QP+ QP+ KF+++E+CDRIKEE +LQAQ HSLKLE EKLAS+KT+MQR YVMYYEMSYGLN+EMHKQ EI KRLNAIC Q++PFLSQEHQQQV+QA++RAKQVTM+ELNAIIGQQL +Q L H
Sbjct: 1 MIRDLSKMYPQTRHP-------------APHQPA-QPF-KFTISESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNAICAQVIPFLSQEHQQQVVQAVERAKQVTMAELNAIIGQQLQAQHLSH 140 The following BLAST results are available for this feature:
BLAST of TCONS_00012200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.