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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012158 ID=TCONS_00012158|Name=TCONS_00012158|organism=Clytia hemisphaerica|type=transcript|length=861bp
TTTTATTTGTCCTTGTTTATGTCTGAGTCTCTGTATGTTTGTTGATGCTG
TTTAAGAAAAAATGAATCCTGGAGATGAAAAAAATTTAGCGCACAGTGCT
GTCGGTAGAAATGCAATGGTAGAAATGGATAGTGGAGAGATTGTGAaact
gaaaaaagaacatcaaaaagAGATTGAGAAACTCAAAATGGAATTTAAGA
TTCAACAACTGGAATCTGAGAAcgagaaaactttgaaaatcatgcagtta
gaaaaagaaaatcaaactttATCTCATCAATTTGAgattttcaaattaaa
gaattcttattaTTCTCAATCAAGTCAAGCTCAAGCTGATCAACAACTCC
AAAATAAGTTAGTTGAAAAGGAGAAACAATTGGTAGCCAAAGAGCACGAA
ATGGTTCTGTACAAGAAAGAACAagaaaatgaatggaaaatgaaaataaa
agatttggaaaatgaatggaaaatgaaaatgaaagatttagaaaatgaat
ggaaaatgaaaatgaaagatttagaaaatgaacacaaaatcaaaatctta
caAACGGAGACAAAATTGAACGAGATGGAGAAAGAAATGACAGAGAAAGA
AGCAACTGTCCAACATTTAAAccgagaaattgaaaatttgaaaagggtCA
TTCAAAAGCAAAACCAAGCTGCGGATAAAGTTGAGGAAAATATGACGACG
ATCGATCGTTTGGTTTGGGGAGCAGAATATTTTCACGAAGGAAACAAATC
TTCACTTTTGTACCCTTCTTATGGTGACTGGTACAAAGCGATTTCCGGGA
TGATGGGAAATAAAAAAGTGTTCAAGAAGGATAAATATTTGTTCATGAGA
AAGGAATTCAA Run BLAST on NCBI protein sequence of TCONS_00012158-protein >TCONS_00012158-protein ID=TCONS_00012158-protein|Name=TCONS_00012158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MNPGDEKNLAHSAVGRNAMVEMDSGEIVKLKKEHQKEIEKLKMEFKIQQL
ESENEKTLKIMQLEKENQTLSHQFEIFKLKNSYYSQSSQAQADQQLQNKL
VEKEKQLVAKEHEMVLYKKEQENEWKMKIKDLENEWKMKMKDLENEWKMK
MKDLENEHKIKILQTETKLNEMEKEMTEKEATVQHLNREIENLKRVIQKQ
NQAADKVEENMTTIDRLVWGAEYFHEGNKSSLLYPSYGDWYKAISGMMGN
KKVFKKDKYLFMRKEF Run BLAST on NCBI transcript from alignment at sc0000141:94026..98482+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012158 ID=TCONS_00012158|Name=TCONS_00012158|organism=Clytia hemisphaerica|type=transcript|length=4457bp|location=Sequence derived from alignment at sc0000141:94026..98482+ (Clytia hemisphaerica)
TTTTATTTGTCCTTGTTTATGTCTGAGTCTCTGTATGTTTGTTGATGCTG
TTTAAGAAAAAATGAATCCTGGAGATGAAAAAAATTTAGCGCACAGTGCT
GTCGGTAGAAATGCAATGGTAGAAATGGATAGTGGAGAGATTGTGAaact
gaaaaaagaacatcaaaaagAGATTGAGAAACTCAAAATGGAATTTAAGA
TTCAACAACTGGAATCTGAGAAcgagaaaactttgaaaatcatgcagtta
gaaaaagaaaatcaaactttATCTCATCAATTTGAgattttcaaattaaa
gaattcttattaTTCTCAATCAAGTCAAGCTCAAGCTGATCAACAACTCC
AAAATAAGTTAGTTGAAAAGGAGAAACAATTGGTAGCCAAAGAGCACGAA
ATGGTTCTGTACAAGAAAGAACAagaaaatgaatggaaaatgaaaataaa
agatttggaaaatgaatggaaaatgaaaatgaaagatttagaaaatgaat
ggaaaatgaaaatgaaagatttagaaaatgaacacaaaatcaaaatctta
caAACGGAGACAAAATTGAACGAGATGGAGAAAGAAATGACAGAGAAAGA
AGCAACTGTCCAACATTTAAAccgagaaattgaaaatttgaaaaggcTTA
TTCCAAACGAAAACCAAGCTGCGGAAAAAGTTGAGGAAAATATGACGACG
ATCGATCGTTTGATTTGGGGAGCAGAATATTTTCACGAAGGAAATAAATC
TTCACTTTTGTACCCTTCTTATGGTGACTGGTACAAAGCGATTTCCGCGA
TGATGGGAAATAAAAAAGTGTTCAAGAAGGATAAATATTTGTTCATGAGA
AGGGAATTCAATAAGGCCTATGACTATCTGTATTTCGCGAACAGAAAAGA
CAACAGTTACGAAGAACAGTTGAAGGATTTTATGGTTGAAGATTCGAAAA
TTGTATGGGAAACTGCaactttctttcttcttcataCAAAGgattttgga
aaacatttaaAGTTTGGACGAATGAGTCAGGAAGTTTCTTTTGAATATTG
GCGCGTTGTTAATGTTTCAGGTTCTTATTTCGGTGCTAAACAATCTGCAA
TTGTTTTCGGAATTTTAAAGTGAATCAAATATACCAAAGATTGTAACGAA
TAAAACATTTTAATCAGAGAGTCTAGGCTTTGATTGTTTTACAATTTTGT
AAGTTCATTTTTGAGAGCAGAATTTAATCAGGTCGGATCAGtaccagctg
gcacaaaacgttcTTTTAACGTACATTTAACGTTTAATGGACGTTAGGGA
TGTCAGATGGACGTTATTGTGACATTCTGTGCCAGCCAAGTCATGACCCT
TTTTAGTGACGTGTTTGTATACGGAACCCCAGCTTCACTCGAAAAGAAAG
CAATTGCACTACAAAACCTTTCCCACAGTTTTGTGAACCTGAGGACAAAA
GaacttctatccccattggcatttcgATAGAAATCTTCATTCCCACTCTG
GAAAGAGGCTCCcttggggctgtgagacaggggtgttttggtGTCATttg
gtactaaaataccaaaatggtTGTATAAAAAGGAAGACACGAGAAATCTT
ACTACATTTTATTACTAAAACTagcaatttcatttttctttaagtttttt
ttttaaataccacTTCTTATAATAGTGGGTGCACTTTATACGAAAATTTT
AGTATCTTTAGATTTAAGTACAGTATGGAAAAACTTTTCCAAAAGGAAGA
AATATTATTGGATCATTCATTATAGCTTGTTTCTTGTCTCGAATATTTTG
TGTCCTACCTTATACTGTATTGAGAAAGATCCGACTTTTCTTTANATACa
ttatggaaaaaaattttacaaaagaaagaaattttattgaatcatTCATT
ATGGCTTGTTTCTTGTCTCGAATATTTTGTGTCCTACCTTTTACTGTATT
GAGAAGATCCGACTTTTCTTTAGGAAGGCGAGATCGCAAAAAAAGTGTTA
GTGCTAGTGGGAGGAATGTGCACAAAGTTGCTGACGATCAGCAAATTACA
AAGCTCaaaaaagaacatcaaaaagAGATCGAAAAACTCAAAATGNcata
ttgacaaaaaatttcgaggattttttgtttgcagcaaacaactttccaac
agaaaattttttcaaattataaaaatcttcagatattttttcggaaaagt
catccaaaaaattgagaGAATTACAATAATagagctaaaatttgctaatt
ttaccagtttaactacccaggtagtaaaattttttcaacatttaacacat
agataccacccattttagtatttaNTGAGAAACTCAAAATGGAATTTAAG
ATTCAACAACTGGAATCTGAGAACGAGAAAACGTTGAAAACCATGCAGCT
AGAAAAAGAATTATTAGGCAATCGAATTATTCTCCGATAAGGTTTACTCA
AACCGAGAACTAACGAACGAGAAATATAGCTCATTAACTTTGACAATTTT
TCGGCAGAAATGAACAATAGCTTTATCCTTATCTGAGTGATGTGAAAATG
ATATGTGCTCGATTTGAATTGAGGGTAATTGtttaaaaactaaaactaaa
gtctgtctcaatataatttgcaggggagacaaaaatggctataactgttg
atagaatttgaattatatcaggggggggggggggggggggaaaaNtaaaa
gtttttttcgatttttcgtcacaccaccaccgtagtaaacgtcattatgt
ctgagattttactaccgaccccccccctgattaTATAGTGGTGTTGTGTT
TGTTGAAAcgacaaacaggagtggaatattatcataaagaaaaaactcaa
aaaagatcggaaaataaagattgaaaatgaagaagaagaaaatcaacttc
ttcaataattgtgctatgattatcattttcacacgagtgattcttagatc
ttagaacatcattaatgtgaaaaacttttgaatatTGATTTATTATTCAA
TCGAAAGATCAATCACTGATTGACTACAAATACCATCAAACAAATAACGA
AAAAGAGCccttttttaaccctttaagtgccaatgtcgtatatatcagac
atggtcTATGTAGGAGGACGAAGCCCTCTTGTAAtacccagtttgagtta
gaaatcatcatttttggtctaacttgTAGAAatcggattgggcttcatgg
ccaagcaaaaaaacaaatcaaaagtgagtcttttcagcgagattttaagc
taaaaagtcaaaaaaaacacaaaaatttgacaaaaatccacttttttaag
attttgaccgtcttttgaccatttttggtcaacgagtgatccaagaacct
ccaaatttggccctgattaacttgattctgtcctccagcaaattagtttg
aagttttaccactaggcgcctttctatcattcagtcaggtccgcgcagcg
gtcAACTGAAGTTGTCATGACAtctaaaatttgttttgtttgagCAAGAA
TGACATATGAAACTAAATCAATAGAAAGACAGAGGGGGGAGCATAATTTG
ATGTTATTTTAAAAACAGTTTGGGTGATTTGAGACAACTACTTGcgtttt
tgaagccttgagtTTTTATTCGTCCTTGTTTGTGTCTGAGTCTCTGTATG
TACGGTGTTTGTTGATGCTGTTTAAGAAAAAATGAATCCTGAAGATAAAA
GAAATTTAGCTCACAGTGCTGTCGGTAGAAATCCGATGGTGGAAATGGAT
AGTGGAGAGATTGTGAAACTcaaagaagaacatcaaaaagaaattcaaaa
actgACCTATGAATCAAAGATAGAATTGATGGAATCACAAATGAAAACCA
TGCagctagaaaaagaaaatcaaactttATCTCATCAATTTGAGATGTTC
AAATTAAAGAATTCTCGTGAATCTCAATCAAGTCAAGTTCAAGCCGATCA
ACAActccaaaaacaaaacatcgAGCTGCAAAATAACTTGGTTGAAAAGG
AGAAACAATTGCTAGCCAAAGAGCACGAAATGGTTCTGTACAAGAAAGAA
CAagaaaatgaatggaaaatgaaaataaaagacttggaaaatgaatggaa
aatgaaaatgaaagatttagaaaatgaacacaaaattaaaatcttacTAA
CGGAGACAAAATTGAACGAGAGGGAGAAAGAAATAACAGAGAAAGAAGCA
ACTGTCCAACATTTGAAtagagaaattgaaaatttgaaaagggtCATTCA
AAAGCAAAACCAAGCTGCGGATAAAGTTGAGGAAAATATGACGACGATCG
ATCGTTTGGTTTGGGGAGCAGAATATTTTCACGAAGGAAACAAATCTTCA
CTTTTGTACCCTTCTTATGGTGACTGGTACAAAGCGATTTCCGGGATGAT
GGGAAATAAAAAAGTGTTCAAGAAGGATAAATATTTGTTCATGAGAAAGG
AATTCAA Coding sequence (CDS) from alignment at sc0000141:94026..98482+ >TCONS_00012158 ID=TCONS_00012158|Name=TCONS_00012158|organism=Clytia hemisphaerica|type=CDS|length=1596bp|location=Sequence derived from alignment at sc0000141:94026..98482+ (Clytia hemisphaerica)
ATGAATCCTGGAGATGAAAAAAATTTAGCGCACAGTGCTGTCGGTAGAAA
TGCAATGGTAGAAATGGATAGTGGAGAGATTGTGAaactgaaaaaagaac
atcaaaaagAGATTGAGAAACTCAAAATGGAATTTAAGATTCAACAACTG
GAATCTGAGAAcgagaaaactttgaaaatcatgcagttagaaaaagaaaa
tcaaactttATCTCATCAATTTGAgattttcaaattaaagaattcttatt
aTTCTCAATCAAGTCAAGCTCAAGCTGATCAACAACTCCAAAATAAGTTA
GTTGAAAAGGAGAAACAATTGGTAGCCAAAGAGCACGAAATGGTTCTGTA
CAAGAAAGAACAagaaaatgaatggaaaatgaaaataaaagatttggaaa
atgaatggaaaatgaaaatgaaagatttagaaaatgaatggaaaatgaaa
atgaaagatttagaaaatgaacacaaaatcaaaatcttacaAACGGAGAC
AAAATTGAACGAGATGGAGAAAGAAATGACAGAGAAAGAAGCAACTGTCC
AACATTTAAAccgagaaattgaaaatttgaaaagggtCATTCAAAAGCAA
AACCAAGCTGCGGATAAAGTTGAGGAAAATATGACGACGATCGATCGTTT
GGTTTGGGGAGCAGAATATTTTCACGAAGGAAACAAATCTTCACTTTTGT
ACCCTTCTTATGGTGACTGGTACAAAGCGATTTCCGGGATGATGGGAAAT
AAAAAAGTGTTCAAGAAGGATAAATATTTGTTCATGAGAAAGGAATTCAT
GAATCCTGGAGATGAAAAAAATTTAGCGCACAGTGCTGTCGGTAGAAATG
CAATGGTAGAAATGGATAGTGGAGAGATTGTGAaactgaaaaaagaacat
caaaaagAGATTGAGAAACTCAAAATGGAATTTAAGATTCAACAACTGGA
ATCTGAGAAcgagaaaactttgaaaatcatgcagttagaaaaagaaaatc
aaactttATCTCATCAATTTGAgattttcaaattaaagaattcttattaT
TCTCAATCAAGTCAAGCTCAAGCTGATCAACAACTCCAAAATAAGTTAGT
TGAAAAGGAGAAACAATTGGTAGCCAAAGAGCACGAAATGGTTCTGTACA
AGAAAGAACAagaaaatgaatggaaaatgaaaataaaagatttggaaaat
gaatggaaaatgaaaatgaaagatttagaaaatgaatggaaaatgaaaat
gaaagatttagaaaatgaacacaaaatcaaaatcttacaAACGGAGACAA
AATTGAACGAGATGGAGAAAGAAATGACAGAGAAAGAAGCAACTGTCCAA
CATTTAAAccgagaaattgaaaatttgaaaagggtCATTCAAAAGCAAAA
CCAAGCTGCGGATAAAGTTGAGGAAAATATGACGACGATCGATCGTTTGG
TTTGGGGAGCAGAATATTTTCACGAAGGAAACAAATCTTCACTTTTGTAC
CCTTCTTATGGTGACTGGTACAAAGCGATTTCCGGGATGATGGGAAATAA
AAAAGTGTTCAAGAAGGATAAATATTTGTTCATGAGAAAGGAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012158-exon-sc0000141-1491911889:94026..94670 | TCONS_00012158-exon-sc0000141-1491911889:94026..94670 | Clytia hemisphaerica | exon |
| TCONS_00012158-exon-sc0000141-1510915933:94026..94670 | TCONS_00012158-exon-sc0000141-1510915933:94026..94670 | Clytia hemisphaerica | exon |
| TCONS_00012158-exon-sc0000141-1575043694:94026..94670 | TCONS_00012158-exon-sc0000141-1575043694:94026..94670 | Clytia hemisphaerica | exon |
| TCONS_00012158-exon-sc0000141-1491911889:98267..98482 | TCONS_00012158-exon-sc0000141-1491911889:98267..98482 | Clytia hemisphaerica | exon |
| TCONS_00012158-exon-sc0000141-1510915933:98267..98482 | TCONS_00012158-exon-sc0000141-1510915933:98267..98482 | Clytia hemisphaerica | exon |
| TCONS_00012158-exon-sc0000141-1575043694:98267..98482 | TCONS_00012158-exon-sc0000141-1575043694:98267..98482 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000141 | supercontig | sc0000141:94026..98482 + |
Blast
The following BLAST results are available for this feature:
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