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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001196 ID=TCONS_00001196|Name=TCONS_00001196|organism=Clytia hemisphaerica|type=transcript|length=2006bpRun BLAST on NCBI transcript from alignment at sc0000007:930008..937677- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001196 ID=TCONS_00001196|Name=TCONS_00001196|organism=Clytia hemisphaerica|type=transcript|length=7670bp|location=Sequence derived from alignment at sc0000007:930008..937677- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00001196 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3) HSP 1 Score: 117.472 bits (293), Expect = 8.045e-27 Identity = 107/381 (28.08%), Postives = 159/381 (41.73%), Query Frame = 2 Query: 869 CPAIKLSLNSIHLDKSCNGVDSSCTSVCRIDCKKGYKLIG-QNHVTCHGSGKWTG--KLGYCKDSEPPTITCPK-LPIPTVNNKPGTNYSIISFPNATATDNSGFPVTITTSHPS--PLKVFVHHPVEVTYTATDAVGNTNKCKRKFIVKDHEAPVVTYCPKKHRIIKTGLFPHRVFWPMPRFTDNVEADNELVFIPSVVNGTKFYQGKHSVDIKARDKSSNTGNCTMTFELQMLKCPVDAPPKHGSATCNIKNNGKVEAFICTAACQKGSWFLEGANIPKVYNLYVCSM-DGAWQGASVFNFDNLVHSPMVPINRGDPMWPDCSVGKSPNGVALDMQIF--SGKCSDQASMEKLKRDFVATLKKDFIWGAAFCSQQQQCD 1984
C ++ + I +C + ++C + C++G+ L G + + C SGKW + CKD E P I CPK + T+ + N +++ TA DNSG V++ HP+ P +F V + YTATD GN C V D E PV+ +C + ++ H W P+F+DN A ELV S G F QG+ V A D S N C + ++ C + P +G C N G CT C +G F EG+ + Y C+ DG W+ WPDC+ + N ++F + +C D M+K F TL K +FCS + D
Sbjct: 498 CSTFQMPKDVIISPHNCGKQPAKFGTICYVSCRQGFILSGVKEMLRCTTSGKWNVGVQAAVCKDVEAPQINCPKDIEAKTLEQQDSAN---VTWQIPTAKDNSGEKVSVHV-HPAFTPPYLFPIGDVAIVYTATDLSGNQASCIFHIKVIDAEPPVIDWC-RSPPPVQVSEKVHAASWDEPQFSDNSGA--ELVITRSHTQGDLFPQGETIVQYTATDPSGNNRTCDIHIVIKGSPCEIPFTPVNGDFICTPDNTG----VNCTLTCLEGYDFTEGST-----DKYYCAYEDGVWKPTYTTE------------------WPDCAKKRFANHGFKSFEMFYKAARCDDTDLMKKFSEAFETTLGKMV---PSFCSDAEDID 841 The following BLAST results are available for this feature:
BLAST of TCONS_00001196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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TCONS_00001196 (transcript) - C. hemisphaerica
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Overview
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