TCONS_00012152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012152
Unique NameTCONS_00012152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012152 ID=TCONS_00012152|Name=TCONS_00012152|organism=Clytia hemisphaerica|type=transcript|length=476bp
TGTTGACTCACTGCTAGGAGCATTTTCTTGTTgactgaatatttttataa
gtttgTTGTAGTTTTTTTGACGGCTTTATTGAAAAATTAGGCAACTATGA
GTGCAGAAAAACAGAGTCAATTTCGCCGCGAAGAAGAGGAGATTGCCAAA
GGTGCCAACGCCATGGAGGATCCTGAAAGATGTTCAATTTGTTTACAACC
AAAAACTCCGAATTCTCCATCCAACAAGTGTGATCAATGTTTGGATAAAA
TAGACAAAGTTCCAACAGGATTCGCTTTCAAAGTGGTGGAAGGCCAGGAA
GATAAGGAATTCGAATGTCCCATTTGTTTGTGTTTAATCAAAGGAGCAAC
TGAGCTCCCTTGTGAACATTTGATGTGTGGAGAATGTTTGCTTCACTATG
AGAAAGGACAAACTGAGAAAGCGGAAAAGTAagttcaaacatttttttta
tttagaaaaatcatACTTTCGTTTAG
Run BLAST on NCBI

protein sequence of TCONS_00012152-protein

>TCONS_00012152-protein ID=TCONS_00012152-protein|Name=TCONS_00012152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MSAEKQSQFRREEEEIAKGANAMEDPERCSICLQPKTPNSPSNKCDQCLD
KIDKVPTGFAFKVVEGQEDKEFECPICLCLIKGATELPCEHLMCGECLLH
YEKGQTEKAEK
Run BLAST on NCBI

transcript from alignment at sc0000137:480638..481113

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012152 ID=TCONS_00012152|Name=TCONS_00012152|organism=Clytia hemisphaerica|type=transcript|length=476bp|location=Sequence derived from alignment at sc0000137:480638..481113 (Clytia hemisphaerica)
CTAAACGAAAGTatgatttttctaaataaaaaaaatgtttgaactTACTT
TTCCGCTTTCTCAGTTTGTCCTTTCTCATAGTGAAGCAAACATTCTCCAC
ACATCAAATGTTCACAAGGGAGCTCAGTTGCTCCTTTGATTAAACACAAA
CAAATGGGACATTCGAATTCCTTATCTTCCTGGCCTTCCACCACTTTGAA
AGCGAATCCTGTTGGAACTTTGTCTATTTTATCCAAACATTGATCACACT
TGTTGGATGGAGAATTCGGAGTTTTTGGTTGTAAACAAATTGAACATCTT
TCAGGATCCTCCATGGCGTTGGCACCTTTGGCAATCTCCTCTTCTTCGCG
GCGAAATTGACTCTGTTTTTCTGCACTCATAGTTGCCTAATTTTTCAATA
AAGCCGTCAAAAAAACTACAAcaaacttataaaaatattcagtcAACAAG
AAAATGCTCCTAGCAGTGAGTCAACA

Coding sequence (CDS) from alignment at sc0000137:480638..481113

>TCONS_00012152 ID=TCONS_00012152|Name=TCONS_00012152|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000137:480638..481113 (Clytia hemisphaerica)
tTACTTTTCCGCTTTCTCAGTTTGTCCTTTCTCATAGTGAAGCAAACATT
CTCCACACATCAAATGTTCACAAGGGAGCTCAGTTGCTCCTTTGATTAAA
CACAAACAAATGGGACATTCGAATTCCTTATCTTCCTGGCCTTCCACCAC
TTTGAAAGCGAATCCTGTTGGAACTTTGTCTATTTTATCCAAACATTGAT
CACACTTGTTGGATGGAGAATTCGGAGTTTTTGGTTGTAAACAAATTGAA
CATCTTTCAGGATCCTCCATGGCGTTGGCACCTTTGGCAATCTCCTCTTC
TTCGCGGCGAAATTGACTCTGTTTTTCTGCACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006840XLOC_006840Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012152-proteinTCONS_00012152-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012152-exon-sc0000137-1491911889:480638..481113TCONS_00012152-exon-sc0000137-1491911889:480638..481113Clytia hemisphaericaexon
TCONS_00012152-exon-sc0000137-1510915933:480638..481113TCONS_00012152-exon-sc0000137-1510915933:480638..481113Clytia hemisphaericaexon
TCONS_00012152-exon-sc0000137-1575043694:480638..481113TCONS_00012152-exon-sc0000137-1575043694:480638..481113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:480638..481113 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132875	0.273558	0.473279	0.14719	0.916725	0.283197	0.349337	0.576998	1.33334	1.24302	1.52139	1.20947	10.3451	10.4368	9.44665	8.33516	4.77521	5.86223	14.3402	14.2748	4.90392	4.21281	3.41812	3.53786	4.66676	3.13179	6.87224	6.51927	11.0304	9.5691
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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