TCONS_00011968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011968
Unique NameTCONS_00011968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011968 ID=TCONS_00011968|Name=TCONS_00011968|organism=Clytia hemisphaerica|type=transcript|length=560bp
CAATCGATAGAGAAACATCTAAAGAAAAGAGAAGTTTACACTCAGAACAA
CGTAATCgctaacaaaaaaatcaaccaTATATCAAGAAAGCTCAGTATAA
GAACTACAACAAACACATCAGCAACAACAAAATGCCAGGATTAAACTCAC
TCACCGATAAACATATGAAAAATATGAACCAAACACCTTATTGGAACAAA
GAAAACCCTTTCGCCGGTAACTACGCCAGAGGAGTCGACCATGTCTACAA
TCCGAAAAAAGTTCAACCAAGTTCACCGAGACTGGCTTCAAATCAATATT
CGTACCCTAAACAATATACAATGGCTTCACAAATGGCTCGCGCTTTCATG
AAATACAAACCACACATCTCAAAATTTCTCTaactaaaatttcataaaat
tagaatatttaaattttacaattgaAAACTTGCAGGCAAGGTGTACATAC
TgtacatattttgaaaaatatcttgtataaaattatattatgaGTAGATC
TTTAACTTTaacatttttggtatttttgatttttccgttaaaagctttat
tattttttaa
Run BLAST on NCBI

transcript from alignment at sc0000134:91527..92328-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011968 ID=TCONS_00011968|Name=TCONS_00011968|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at sc0000134:91527..92328- (Clytia hemisphaerica)
CAATCGATAGAGAAACATCTAAAGAAAAGAGAAGTTTACACTCAGAACAA
CGTAATCGCTAACAAAAAAATCAACCATATATCAAGAAAGCTCAGTATAA
GGTAAGCTATAAGCCTTCTTGACTGTTATATAATTGACTAATTCTTCAAA
GTTAAAGTTGCAAGATTTACTTCTAAAGTGAGTTAGGCTTGAATTTACAA
TATTCTTGCATTTTGTAAAGGCTTGAATCTACAATATATTCAAATTTATT
CGGAAGCGAAAAATATAAAAATGAAGTTTAAGACCTTCTTAAAAAAGCAC
ACTTAACTGTAGTCTAAAATTTCTTATTTTCTATTTTCTTCAGAACTACA
ACAAACACATCAGCAACAACAAAATGCCAGGATTAAACTCACTCACCGAT
AAACATATGAAAAATATGAACCAAACACCTTATTGGAACAAAGAAAACCC
TTTCGCCGGTAACTACGCCAGAGGAGTCGACCATGTCTACAATCCGAAAA
AAGTTCAACCAAGTTCACCGAGACTGGCTTCAAATCAATATTCGTACCCT
AAACAATATACAATGGCTTCACAAATGGCTCGCGCTTTCATGAAATACAA
ACCACACATCTCAAAATTTCTCTAACTAAAATTTCATAAAATTAGAATAT
TTAAATTTTACAATTGAAAACTTGCAGGCAAGGTGTACATACTGTACATA
TTTTGAAAAATATCTTGTATAAAATTATATTATGAGTAGATCTTTAACTT
TAACATTTTTGGTATTTTTGATTTTTCCGTTAAAAGCTTTATTATTTTTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006713XLOC_006713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011968-exon-sc0000134-1575043694:92228..92328TCONS_00011968-exon-sc0000134-1575043694:92228..92328Clytia hemisphaericaexon
TCONS_00011968-exon-sc0000134-1575043694:91527..91985TCONS_00011968-exon-sc0000134-1575043694:91527..91985Clytia hemisphaericaexon
TCONS_00011968-exon-sc0000134-1510915933:92228..92328TCONS_00011968-exon-sc0000134-1510915933:92228..92328Clytia hemisphaericaexon
TCONS_00011968-exon-sc0000134-1510915933:91527..91985TCONS_00011968-exon-sc0000134-1510915933:91527..91985Clytia hemisphaericaexon
TCONS_00011968-exon-sc0000134-1491911889:92228..92328TCONS_00011968-exon-sc0000134-1491911889:92228..92328Clytia hemisphaericaexon
TCONS_00011968-exon-sc0000134-1491911889:91527..91985TCONS_00011968-exon-sc0000134-1491911889:91527..91985Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:91527..92328 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.2958	0.0654635	3.74542	2.64737	5.48355	8.84105	24.8004	166.092	16.9639	145.445	6.65896	4.30855	0	0	0	0	0	0.634314	0	0	0.282626	0	11.6516	43.0484	0	8.03768	4.71842	1.19635e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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