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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011646 ID=TCONS_00011646|Name=TCONS_00011646|organism=Clytia hemisphaerica|type=transcript|length=2765bpRun BLAST on NCBI protein sequence of TCONS_00011646-protein >TCONS_00011646-protein ID=TCONS_00011646-protein|Name=TCONS_00011646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp MNVKAFQKILPCSTQFSLFNSTSDRILEDLEVYTGQSNTPQSPEQVGHEFRun BLAST on NCBI transcript from alignment at sc0000131:171510..188987+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011646 ID=TCONS_00011646|Name=TCONS_00011646|organism=Clytia hemisphaerica|type=transcript|length=17478bp|location=Sequence derived from alignment at sc0000131:171510..188987+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000131:171510..188987+ >TCONS_00011646 ID=TCONS_00011646|Name=TCONS_00011646|organism=Clytia hemisphaerica|type=CDS|length=32304bp|location=Sequence derived from alignment at sc0000131:171510..188987+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011646 vs. Swiss-Prot (Human)
Match: ANKZ1 (Ankyrin repeat and zinc finger domain-containing protein 1 OS=Homo sapiens GN=ANKZF1 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 1.996e-48 Identity = 129/378 (34.13%), Postives = 202/378 (53.44%), Query Frame = 1
Query: 535 GEEVASQHSNNIQLSGSKNSEG----EVPLKVS----CTTCDVWFDSPFLQREHFKLDWHRYNIKQKCLGKPLLTEDEFEEQVS-GELXXXXXXXXXXXXXXXXXPTSAITRQMSDVEIKEETSIFSMHPTKKFYITQDLMLVSFHRGVL----NQPEEAYQKSFSVIKQCKSSCIWTYLLISGGHFAAAVFDKKTVIAHKTFHRYTVRAKRGTIQGVQDKKSGVAKSAGGQIRRYNEAALAEDIKNLLIG--WTKELQTSDKIFYKCSSYHMNVLFNDK-TPVKRDDERVSKISMQTNRPTFKEVQRIHQLFSTFDHYGLCSITEKNLEDLIENSTPQKQTQKGLPVKTNQNKNTDKETASPKQDHLKKRKENQKKP 1620
GE +A + SG + S + P+ +S C+TCD F + QREH+KLDWHR+N+KQ+ KPLL+ +FE+Q S G+LSSISGS+ D E+ T + R+ + E F +P + + + +R VL + PEEA ++ + C+ L+ + GHFA A+F + V+ HKTFHRYTVRAKRGT QG++D + G + SAG +RRYNEA L +D+++LL G W K L+ + I + ++ F K P++R D R+ I + T RPTF+E+QR+ +T Y E++ + + +PQ + V+ + K T++E +D + +N++ P
Sbjct: 37 GEALARAPRTSCSGSGERESPERKLLQGPMDISEKLFCSTCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALDFEKQSSTGDLSSISGSEDSDSASEEDLQT--LDRERATFEKLSRPPGF--YPHRVLFQNAQGQFLYAYRCVLGPHQDPPEEAELLLQNLQSRGPRDCV--VLMAAAGHFAGAIFQGREVVTHKTFHRYTVRAKRGTAQGLRDARGGPSHSAGANLRRYNEATLYKDVRDLLAGPSWAKALEEAGTILLRAPRSGRSLFFGGKGAPLQRGDPRLWDIPLATRRPTFQELQRVLHKLTTLHVY------EEDPREAVRLHSPQTHWKT---VREERKKPTEEEIRKICRDEKEALGQNEESP 399 The following BLAST results are available for this feature:
BLAST of TCONS_00011646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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