|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011635 ID=TCONS_00011635|Name=TCONS_00011635|organism=Clytia hemisphaerica|type=transcript|length=2463bpRun BLAST on NCBI protein sequence of TCONS_00011635-protein >TCONS_00011635-protein ID=TCONS_00011635-protein|Name=TCONS_00011635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=577bp MSQLSIEIQKDGETTEGPILETLIHLMSQCNLKYDEIKSEEDSSSSVIVTRun BLAST on NCBI transcript from alignment at sc0000131:59469..71940+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011635 ID=TCONS_00011635|Name=TCONS_00011635|organism=Clytia hemisphaerica|type=transcript|length=12472bp|location=Sequence derived from alignment at sc0000131:59469..71940+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000131:59469..71940+ >TCONS_00011635 ID=TCONS_00011635|Name=TCONS_00011635|organism=Clytia hemisphaerica|type=CDS|length=15606bp|location=Sequence derived from alignment at sc0000131:59469..71940+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011635 vs. Swiss-Prot (Human)
Match: IF2B2 (Insulin-like growth factor 2 mRNA-binding protein 2 OS=Homo sapiens GN=IGF2BP2 PE=1 SV=2) HSP 1 Score: 179.104 bits (453), Expect = 1.360e-47 Identity = 130/427 (30.44%), Postives = 208/427 (48.71%), Query Frame = 3
Query: 585 CRLLIPSHMVKVILGKNGTTITSIQKKTNTKIDIHRDKGSGRGRQTDDTLTSIKGDPEAFSNAIKELLTVINAELESEENEDPMPLQLKLLAHDLLCGRIIGKGGNNLKSVRQESGIKKLIISNSIYDEGGQFGPNGMMVSLGERVITVEGTVDAISAAERIISQRLRDYMEKDLKNSTNNQQVSNGY----CGGGQTXXXXXXXXXXXXXXPQMQMMYPASRNXXXXXXXXXXXXXXXXXXXXXXGVLGQGYP-----PFSGVMTSPPQALYGEEETCAILIPTKEVGAVIGRNGGYINKVKQYSNAQVRV--VKGEEGGESRVEIRGTPDAQWRASLCVFGKIK-ETMKVPYSDAQLRTEFMVPGSCVGRIIGKKGQVVQDIQDKAQTDIEVPKDK--QGGDDVPVYITGTFNGTQIALNRIRDI 1823
R+L+P+ V I+GK G TI +I K+T +++DIHR + SG + +I PE S A + +L ++ E + + + +P LK+LAH+ L GR+IGK G NLK + E+G K I +S+ D + + ER ITV+GTV+A ++AE I ++LR+ E D+ + G G T S P +P + + G YP PF P Y E+E + IPT+ VGA+IG+ G +I ++ +++ A +++ +G + E V I G P+AQ++A +FGK+K E P + +L VP S GR+IGK G+ V ++Q+ ++ VP+D+ ++V V I G F +Q A +IR+I
Sbjct: 196 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKP----VTIHATPEGTSEACRMILEIMQKEADETKLAEEIP--LKILAHNGLVGRLIGKEGRNLKKIEHETGTK--ITISSLQD---------LSIYNPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLSPPAGPRGAPPAAPYHPFTTH---------------------SGYFSSLYPHHQFGPF------PHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQRKIREI 578 The following BLAST results are available for this feature:
BLAST of TCONS_00011635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.