|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011530 ID=TCONS_00011530|Name=TCONS_00011530|organism=Clytia hemisphaerica|type=transcript|length=1204bp
AACGGTTGCATGTAACATATATCTCTAACCAGGACCCTTGTTAACTGGCA
TAACACAATctaatcaaaaaatacaaaatcaaataattaatttattgttt
ggTAATCTACTCAGAAACAGAcgaaaaactattttcaaatACTCAATAAT
AGACAGAAATATAGGCAATTCTTTTGAGAATAGATTGTctgattgaattt
tttctgGACCCAAAAAACTCTGAGGATTTAATTGACGATTGAAAAAGATA
CTTAGATGATAAAATAAAGACAATGTCAGAATGTAGTTAATCCCTTACAC
AGCATTGAAATTGTtatatatACaaataatttaaataaaattaaacaaTC
AAAGCATTTCACAAAATTAAGAACTCTGCCAAAAAAAGTATATACctctc
aaaattaatttcattatgatTACTAACTGATTAATTAAGAAATATAGTTT
GCTTTCTATAATTTGTTAAATTAGCCAAAGGATTCATCTAATTTGTTCAA
AGTTATCTAGGCAATCATTTTCTCATTTGCAAGAAACCAGTCTCGCTGAA
TTAAAAATTTGGCACACTATTCTTAAAATAATTTCCAAGCTTTTTATatt
ctttccaaatttttagccaatctaatGTACATAATTTTGTAAATCTCAAA
TTCTGTCCATGAGATAGCAGATGGCACTTATTTAGTCAATGACCCAGGCA
TAATCAACATGTGTATTTTAGCCCACTCTCTTCTGCAAATGACATAATCA
CAATTTTACCAAATacgtcaaaatatttacaaaaaccGATGCAATAACCC
TCACAATTTCAGTTTGTAGCATACTGTAAGCTCTGTTTCTGGTGACAGGT
GTGAACAATATATTATCCAAATTTTACGACATTCCAAATATTGTTAGTGT
TAGAAGCAATCCAATCTACCAAGTCTCCAGCCAAGCCACGATATATATCA
AGATATCCCAAAAATCAATCCAGCAGTGACAAATTGAGTGGTGTTAGAtg
tatatattttatttctaaTCACATTTCATCATGTCTGTTGAAGATATCCT
AGTTAAAAGAGAAGTTATCCTCTTGTAGTCTTGTTGCCATCTGTTTTTGA
AATACCTTTTCGTACACACAagaatgtttgatttttttgagcttttttta
tATAGGTATTTTacatctaaataaataaaaaacattatatcaaaatcaat
tgaa Run BLAST on NCBI transcript from alignment at sc0000130:44570..45938+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011530 ID=TCONS_00011530|Name=TCONS_00011530|organism=Clytia hemisphaerica|type=transcript|length=1369bp|location=Sequence derived from alignment at sc0000130:44570..45938+ (Clytia hemisphaerica)
AACGGTTGCATGTAACATATATCTCTAACCAGGACCCTTGTTAACTGGCA
TAACACAATctaatcaaaaaatacaaaatcaaataattaatttattgttt
ggTAATCTACTCAGAAACAGAcgaaaaactattttcaaatACTCAATAAT
AGACAGAAATATAGGCAATTCTTTTGAGAATAGATTGTctgattgaattt
tttctgGACCCAAAAAACTCTGAGGATTTAATTGACGATTGAAAAAGATA
CTTAGATGATAAAATAAAGACAATGTCAGAATGTAGTTAATCCCTTACAC
AGCATTGAAATTGTtatatatatatgtgaagaaattcaaagaatttctgt
ccaactattttctttcaggagatttgggtggcagagcagaaTATGCATTt
tgtccttattaggactcgtcagcactgcatactgcaccctggctagGCAG
ATCAAATTGCCTAGCATCTCACAAATATATATATACACaaataatttaaa
taaaattaaacaaTCAAAGCATTTCACAAAATTAAGAACTCTGCCAAAAA
AAGTATATACctctcaaaattaatttcattatgatTACTAACTGATTAAT
TAAGAAATATAGTTTGCTTTCTATAATTTGTTAAATTAGCCAAAGGATTC
ATCTAATTTGTTCAAAGTTATCTAGGCAATCATTTTCTCATTTGCAAGAA
ACCAGTCTCGCTGAATTAAAAATTTGGCACACTATTCTTAAAATAATTTC
CAAGCTTTTTATattctttccaaatttttagccaatctaatGTACATAAT
TTTGTAAATCTCAAATTCTGTCCATGAGATAGCAGATGGCACTTATTTAG
TCAATGACCCAGGCATAATCAACATGTGTATTTTAGCCCACTCTCTTCTG
CAAATGACATAATCACAATTTTACCAAATacgtcaaaatatttacaaaaa
ccGATGCAATAACCCTCACAATTTCAGTTTGTAGCATACTGTAAGCTCTG
TTTCTGGTGACAGGTGTGAACAATATATTATCCAAATTTTACGACATTCC
AAATATTGTTAGTGTTAGAAGCAATCCAATCTACCAAGTCTCCAGCCAAG
CCACGATATATATCAAGATATCCCAAAAATCAATCCAGCAGTGACAAATT
GAGTGGTGTTAGAtgtatatattttatttctaaTCACATTTCATCATGTC
TGTTGAAGATATCCTAGTTAAAAGAGAAGTTATCCTCTTGTAGTCTTGTT
GCCATCTGTTTTTGAAATACCTTTTCGTACACACAagaatgtttgatttt
tttgagctttttttatATAGGTATTTTacatctaaataaataaaaaacat
tatatcaaaatcaattgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011530-exon-sc0000130-1491911889:44570..44890 | TCONS_00011530-exon-sc0000130-1491911889:44570..44890 | Clytia hemisphaerica | exon |
| TCONS_00011530-exon-sc0000130-1510915933:44570..44890 | TCONS_00011530-exon-sc0000130-1510915933:44570..44890 | Clytia hemisphaerica | exon |
| TCONS_00011530-exon-sc0000130-1575043694:44570..44890 | TCONS_00011530-exon-sc0000130-1575043694:44570..44890 | Clytia hemisphaerica | exon |
| TCONS_00011530-exon-sc0000130-1491911889:45056..45938 | TCONS_00011530-exon-sc0000130-1491911889:45056..45938 | Clytia hemisphaerica | exon |
| TCONS_00011530-exon-sc0000130-1510915933:45056..45938 | TCONS_00011530-exon-sc0000130-1510915933:45056..45938 | Clytia hemisphaerica | exon |
| TCONS_00011530-exon-sc0000130-1575043694:45056..45938 | TCONS_00011530-exon-sc0000130-1575043694:45056..45938 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:44570..45938 + |
Blast
The following BLAST results are available for this feature:
|
