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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001168 ID=TCONS_00001168|Name=TCONS_00001168|organism=Clytia hemisphaerica|type=transcript|length=3465bp
CGAGTTTGtggctcatttatttttctgtgTTAGGGTCCCACTGGGTCCGT
GATATACAGGAAGGCGTGTAATTTTTACACATAGTCTCACGTCACATCTA
CATCCACCTCATCATGAATGTTCTAGTTGCTTCTAGAGGGTAAAAAAGTT
CCACGATGTTTTGAGTAATATTGAAACTATTTGTTTTTTACTAATCCAAA
TGAAATCCACCCTGTCATAAGAAATACCTACATATCACGAAGAAGATCTC
GATGTCCCacaataaacaaaaacaataatTCAGGTAGTTATTTGAATAAA
AGAGGCAAAAACCCTTCAGATTCTTAAATTAATCTTTTGAGGTTTGCTTA
AGAGGTCTTTGAGCAAACAAAATGAAAGAGGTTAGATTGTAAATATATAC
TTGCAAATAATGTGGAAAAATAACCGATTCGAAAACAAGCAACATCATAA
GAAGGAGGAGGTATAGTCGAAATTTTACGAGTTCGCCATTTTGATTCGGT
AAATTTAAAGTCAAGGAGTTGAACACAATTAAAATGGGCGTTGAGGGCGT
CACAAACGAATCGTTCCACCATCAGGGTGAGGACCATCAACATCAACACG
GAACATCTAAACACGCTGACCTCAAACACCTTCAAGAACATTACGATGAA
ATCACAGATACAAAACTCCCTGAAAATCTACACCGTGGTGACATCACAAC
TGTCAACCGTTTCCTTGGTTACCATGATGCCATGATGGCTACCTGCGGTA
CCTTTCTCGTCTTACCATTACGTAATATCAACAACATGGTCAAAGCAAGT
GATTATGACGAGTTAAAAAAGAATCACAAACTGCCCCATGACCCTATCGT
TGTTGATGATTTAGCTGGTTATCTGGACGCAATGAAAACCGAATTCATTA
TGTTCTTCCTTGGTTTTCTTATTATATGCACGATTTGGGAGACCAACATC
ATTCGAACAAACGTCATCAAAAGATACGATGATTTCATGGTGATANTTGG
TTTTCTCATTATTTGCACGATTTGGGAGACCAACATCATTCGAACAAACG
TCATCAAAAGATACGATGATTTTATGGTCATGCTTGGACTCTTCCAGATG
GCAGCCATTGTGGTTCTCCCATTCTCCATCGCTTTGAATGGTGCATACCC
AAGAGAGGATGTGACTGTGCTCCTCACCATAACCATTTTGATcattatca
acattttcgaacTGATCATGATTTTGTACGGATTCTACTGTCCAAGGTTG
CTCAATATGGCTATGAAAGACTGGAGCAATAAGGAGGTCCGACGGTTCAT
GCTGAGAATGTGCATTAAGCCAGTAATGGAGATTCTGCTGGTTGGAGTGG
CAGGGGCTTTCACACTTCTGAATTACCAGATTGCGTGGGCCATGTTAGCC
TTGCTGGTCATTTCTCCGTTGATGCGGAAGTTAGGTTATTATTACGAACG
CCATCATGTGGGTTACGAGAAGAGAGAAAAATGCCgtttcttttatttct
acaCAAAGGGACAGATCAGTAAAGAGAGAGTGGAAGCTATGTCGGATGCA
GCGATCGCAATTATAGcctgtgttttgattttggacATCACAGTGGAAGA
CTTCCCTACAAAACATGCTGTCCATGAAGAAGGTCTGATCAATGTTTTAA
GAGAAATGAAATTCGATTTTGGAGCATTCTTCGGAGCATACTGTGGTGTT
TCCATTTTGTGGTACATCAACCACACTGTGCTCAACCTTTTCCACACTAT
CGACATTGGTACCTTGTATCTTCAAAAGATCTTCCTagctttcctttgtt
ttcttccCATTGTCAATAACATGATGGTAAGATACGGTTTCGGACAGGAA
GGTACGCAAGCGGACCGTCGATTGGCTATTCAATGGTCTGGTGGAATATC
TTTTGCAGCAGGTATCACTCAAACCATGATGGTCGTTTGGGGATATTTCC
GTAAAGAGAAGCTCCTTCACCGTTGGGCCACGTGCAACAAAAGTGAAATG
AATCGCAAGCAACTTTTGTATGTCCGAAGCAAAATTTGCGCTGTTCCCAT
TTGGGCGCTTCTTTGTATTTTCTCATCCTTGGCACCAGGGTCGACGTCAG
TCTATCTGCTCCTGGCGTGTGCCGTGGGTAACCTTCTTACCATGTTGATC
CTGAAGTTCATGTTTATGAACCACATCAATGAGCCAGGTATCTCCATCTT
CGATCATTCCAATCACGGATCCATACTTTCCAACGGTAGTGGTTGCGAAA
TGCGTAAACAGATGAAGCAAGAGATCGCTGATGGTTTCTACGATTCAAGA
GACCATTCTGCGGGCGAATGTGACCTTCGAAAGGGTATGGCGGAAGAGAT
AGCGGATGGGAAAGTTTACCAGGATGAAAATGAGATGGAGAGAGAAGTTC
TGGAAGAGGcggaaaagaaagaaatttaagACGAACAAAAGGAAGAACGG
CAGGAAAATGACATGGCTCAAAACCACCTTCAAGGTGACAAGCAAGACAC
TATCTGTTGACGATTGATCATTGACTGATTCGAGTTTATTTGATAATTGA
TTTTAGGTTATTTCAACAGTAAATATATAACTAAGTAGTATTGCATATAT
TTTTAAGGTTACATTGTTAAGTTATCTTTTCGTAAGTTTAATTCTTGGAT
TTTTTACACTCACTATGTCTAACTGAAATTGTACTACTTTCGTCTCAATT
TACACCTCGTCAAATATTTTGGTTTACTTTTCACTTCAATCGGAGTCAGT
ACTTTGTTTACTCACTCCTTTTTCATTTGGATTAGAATTACCAAATATTT
AAACATTTGTAAAATAAAGATACTGTATAACATATGATTATATAATAATA
GCATGGCTAAGAATTGGTTTTATTAGAAAGAAACAAATTTTGCTACGATT
CTGTACTTAAAGGGCTCGCCACCTACTTGCCTACTTAATTGTAAGTTCAA
ATAAAAGTGGTATTTACATTTCAGAGGGCGTGCCAAAAAATAATGATCGG
tgcaaattcaaaatgaagtgAACTGTGCCTAAccttcgagcatcttccta
tttattttactTGAGAAGCATCTTGGGGGAGGGGGGGGCTTAAAATCTAA
AGATTGAAAAGTAttatgaccttgaaatttctaCCAGTGGTAGGTATGGA
TGATTGGAGATAATTAGCGTTTGGCCACCTGCCTGATTAGTACTTCACAG
ATCAGAATAtaaatttggctaaaatcaCATATTCGCCGATTGACTCGTTC
GATTTGATTAAAATTTGCTGCTGAAAGCTGGTTTGTCAAATAATGCAATC
CCTGGATAAAGTAACCAACCCAGTCCTATTGtcggcattttcaaaaaata
gcgATGTCATCAGGTAGCGATGAAGGTATCAATAATGCCAAAAATGTAAC
CAAGGATGCCAATTCATATAtagaatttcaagtcaattggggaatatttt
caaagttctcaaatt Run BLAST on NCBI transcript from alignment at sc0000007:650377..654241- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001168 ID=TCONS_00001168|Name=TCONS_00001168|organism=Clytia hemisphaerica|type=transcript|length=3865bp|location=Sequence derived from alignment at sc0000007:650377..654241- (Clytia hemisphaerica)
CGAGTTTGTGGCTCATTTATTTTTCTGTGTTAGGGTCCCACTGGGTCCGT
GATATACAGGAAGGCGTGTAATTTTTACACATAGTCTCACGTCACATCTA
CATCCACCTCATCATGAATGTTCTAGTTGCTTCTAGAGGGTAAAAAAGTT
CCACGATGTTTTGAGTAATATTGAAACTATTTGTTTTTTACTAATCCAAA
TGAAATCCACCCTGTCATAAGAAATACCTACATATCACGAAGAAGATCTC
GATGTCCCACAATAAACAAAAACAATAATTCAGGTAGTTATTTGAATAAA
AGAGGCAAAAACCCTTCAGATTCTTAAATTAATCTTTTGAGGTTTGCTTA
AGAGGTCTTTGAGCAAACAAAATGAAAGAGGTTAGATTGTAAATATATAC
TTGCAAATAATGTGGAAAAATAACCGATTCGAAAACAAGCAACATCATAA
GAAGGAGGAGGTATAGTCGAAATTTTACGAGTTCGCCATTTTGATTCGGT
AAATTTAAAGTCAAGGAGTTGAACACAATTAAAGTAAGTATTTCACAGAA
CAATGATTAAACCTTTCAAAAATCATAGCGATGAGTACGACTTTCAAACA
TCTTTTTGTCAGGAAAGAAGAGATCGAAAGATTAGCATGCATTTATTACA
CGTACTTTAAAGTATATACAAAGACAACATGGTATAGATTTCAGTCTTAT
TCAAATAGTTTAGAATAGTCCCTTATTTCTGACTCCCGACTTCCCTCTCA
GTCACATTATATACAACTTATTCAGACATCATTTCTGCTCCAAGAGGACT
CAACCCAAATATTCTCTTTTTGTAGATGGGCGTTGAGGGCGTCACAAACG
AATCGTTCCACCATCAGGGTGAGGACCATCAACATCAACACGGAACATCT
AAACACGCTGACCTCAAACACCTTCAAGAACATTACGATGAAATCACAGA
TACAAAACTCCCTGAAAATCTACACCGTGGTGACATCACAACTGTCAACC
GTTTCCTTGGTTACCATGATGCCATGATGGCTACCTGCGGTACCTTTCTC
GTCTTACCATTACGTAATATCAACAACATGGTCAAAGCAAGTGATTATGA
CGAGTTAAAAAAGAATCACAAACTGCCCCATGACCCTATCGTTGTTGATG
ATTTAGCTGGTTATCTGGACGCAATGAAAACCGAATTCATTATGTTCTTC
CTTGGTTTTCTTATTATATGCACGATTTGGGAGACCAACATCATTCGAAC
AAACGTCATCAAAAGATACGATGATTTCATGGTGATANTTGGTTTTCTCA
TTATTTGCACGATTTGGGAGACCAACATCATTCGAACAAACGTCATCAAA
AGATACGATGATTTTATGGTCATGCTTGGACTCTTCCAGATGGCAGCCAT
TGTGGTTCTCCCATTCTCCATCGCTTTGAATGGTGCATACCCAAGAGAGG
ATGTGACTGTGCTCCTCACCATAACCATTTTGATCATTATCAACATTTTC
GAACTGATCATGATTTTGTACGGATTCTACTGTCCAAGGTTGCTCAATAT
GGCTATGAAAGACTGGAGCAATAAGGAGGTCCGACGGTTCATGCTGAGAA
TGTGCATTAAGCCAGTAATGGAGATTCTANGATTCTACTGTCCAAGGTTG
CTCAATATGGCCATGAAAGACTGGAGCAATAAGGAGGTCCGACGGTTCAT
GCTGAGAATGTGCATTAAGCCAGTAATGGAGATTCTGCTGGTTGGAGTGG
CAGGGGCTTTCACACTTCTGAATTACCAGATTGCGTGGGCCATGTTAGCC
TTGCTGGTCATTTCTCCGTTGATGCGGAAGTTAGGTTATTATTACGAACG
CCATCATGTGGGTTACGAGAAGAGAGAAAAATGCCGTTTCTTTTATTTCT
ACACAAAGGGACAGATCAGTAAAGAGAGAGTGGAAGCTATGTCGGATGCA
GCGATCGCAATTATAGCCTGTGTTTTGATTTTGGACATCACAGTGGAAGA
CTTCCCTACAAAACATGCTGTCCATGAAGAAGGTCTGATCAATGTTTTAA
GAGAAATGAAATTCGATTTTGGAGCATTCTTCGGAGCATACTGTGGTGTT
TCCATTTTGTGGTACATCAACCACACTGTGCTCAACCTTTTCCACACTAT
CGACATTGGTACCTTGTATCTTCAAAAGATCTTCCTAGCTTTCCTTTGTT
TTCTTCCCATTGTCAATAACATGATGGTAAGATACGGTTTCGGACAGGAA
GGTACGCAAGCGGACCGTCGATTGGCTATTCAATGGTCTGGTGGAATATC
TTTTGCAGCAGGTATCACTCAAACCATGATGGTCGTTTGGGGATATTTCC
GTAAAGAGAAGCTCCTTCACCGTTGGGCCACGTGCAACAAAAGTGAAATG
AATCGCAAGCAACTTTTGTATGTCCGAAGCAAAATTTGCGCTGTTCCCAT
TTGGGCGCTTCTTTGTATTTTCTCATCCTTGGCACCAGGGTCGACGTCAG
TCTATCTGCTCCTGGCGTGTGCCGTGGGTAACCTTCTTACCATGTTGATC
CTGAAGTTCATGTTTATGAACCACATCAATGAGCCAGGTATCTCCATCTT
CGATCATTCCAATCACGGATCCATACTTTCCAACGGTAGTGGTTGCGAAA
TGCGTAAACAGATGAAGCAAGAGATCGCTGATGGTTTCTACGATTCAAGA
GACCATTCTGCGGGCGAATGTGACCTTCGAAAGGGTATGGCGGAAGAGAT
AGCGGATGGGAAAGTTTACCAGGATGAAAATGAGATGGAGAGAGAAGTTC
TGGAAGAGGCGGAAAAGAAAGAAATTTAAGACGAACAAAAGGAAGAACGG
CAGGAAAATGACATGGCTCAAAACCACCTTCAAGGTGACAAGCAAGACAC
TATCTGTTGACGATTGATCATTGACTGATTCGAGTTTATTTGATAATTGA
TTTTAGGTTATTTCAACAGTAAATATATAACTAAGTAGTATTGCATATAT
TTTTAAGGTTACATTGTTAAGTTATCTTTTCGTAAGTTTAATTCTTGGAT
TTTTTACACTCACTATGTCTAACTGAAATTGTACTACTTTCGTCTCAATT
TACACCTCGTCAAATATTTTGGTTTACTTTTCACTTCAATCGGAGTCAGT
ACTTTGTTTACTCACTCCTTTTTCATTTGGATTAGAATTACCAAATATTT
AAACATTTGTAAAATAAAGATACTGTATAACATATGATTATATAATAATA
GCATGGCTAAGAATTGGTTTTATTAGAAAGAAACAAATTTTGCTACGATT
CTGTACTTAAAGGGCTCGCCACCTACTTGCCTACTTAATTGTAAGTTCAA
ATAAAAGTGGTATTTACATTTCAGAGGGCGTGCCAAAAAATAATGATCGG
TGCAAATTCAAAATGAAGTGAACTGTGCCTAACCTTCGAGCATCTTCCTA
TTTATTTTACTTGAGAAGCATCTTGGGGGAGGGGGGGGCTTAAAATCTAA
AGATTGAAAAGTATTATGACCTTGAAATTTCTACCAGTGGTAGGTATGGA
TGATTGGAGATAATTAGCGTTTGGCCACCTGCCTGATTAGTACTTCACAG
ATCAGAATATAAATTTGGCTAAAATCACATATTCGCCGATTGACTCGTTC
GATTTGATTAAAATTTGCTGCTGAAAGCTGGTTTGTCAAATAATGCAATC
CCTGGATAAAGTAACCAACCCAGTCCTATTGTCGGCATTTTCAAAAAATA
GCGATGTCATCAGGTAGCGATGAAGGTATCAATAATGCCAAAAATGTAAC
CAAGGATGCCAATTCATATATAGAATTTCAAGTCAATTGGGGAATATTTT
CAAAGTTCTCAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001168-exon-sc0000007-1575043694:653709..654241 | TCONS_00001168-exon-sc0000007-1575043694:653709..654241 | Clytia hemisphaerica | exon |
| TCONS_00001168-exon-sc0000007-1575043694:652664..653416 | TCONS_00001168-exon-sc0000007-1575043694:652664..653416 | Clytia hemisphaerica | exon |
| TCONS_00001168-exon-sc0000007-1575043694:650377..652555 | TCONS_00001168-exon-sc0000007-1575043694:650377..652555 | Clytia hemisphaerica | exon |
| TCONS_00001168-exon-sc0000007-1510915933:653709..654241 | TCONS_00001168-exon-sc0000007-1510915933:653709..654241 | Clytia hemisphaerica | exon |
| TCONS_00001168-exon-sc0000007-1510915933:652664..653416 | TCONS_00001168-exon-sc0000007-1510915933:652664..653416 | Clytia hemisphaerica | exon |
| TCONS_00001168-exon-sc0000007-1510915933:650377..652555 | TCONS_00001168-exon-sc0000007-1510915933:650377..652555 | Clytia hemisphaerica | exon |
| TCONS_00001168-exon-sc0000007-1491911889:653709..654241 | TCONS_00001168-exon-sc0000007-1491911889:653709..654241 | Clytia hemisphaerica | exon |
| TCONS_00001168-exon-sc0000007-1491911889:652664..653416 | TCONS_00001168-exon-sc0000007-1491911889:652664..653416 | Clytia hemisphaerica | exon |
| TCONS_00001168-exon-sc0000007-1491911889:650377..652555 | TCONS_00001168-exon-sc0000007-1491911889:650377..652555 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:650377..654241 - |
Blast
BLAST of TCONS_00001168 vs. Swiss-Prot (Human)
Match: TM175 (Endosomal/lysomomal potassium channel TMEM175 OS=Homo sapiens GN=TMEM175 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.697e-16 Identity = 87/341 (25.51%), Postives = 154/341 (45.16%), Query Frame = 3
Query: 1002 FLIICTIWETNIIRTNVIKRYDDFMVMLGLFQMAAIVVLPFSIALNGAYPREDVXXXXXXXXXXXXXXXXXXXXXYGFYCPRLLNMAMKDWSNKEVRRFMLRMCIKPVMEILLVG-----VAGAFTLLNYQIAWAMLALLVISPLMRKLGYYYERHHVGYEKRE--KCRFFYFYTKGQISKERVEAMSDXXXXXXXCVLILDITVEDFPTKHAVHEE---GLINVLREMKFDFGAFFGAYCGVSILWYINHTVLNLFHTIDIGTLYLQKIFLAFLCFLPIVNNMMVRYGFGQEGTQADRRLAIQWSGGISFAAGITQTMMVVWGYFRKEKLLHRWATCNKS 1994
FLI+ W + V+ + DD + +L L M I LP++ +L +P + + L +I I + + +++ Y F+ P LL+ ++ +++ + R + V+ I+L G A F+L +++ ++ +++ P + K+ + +G+ + F F +SKERVEA SD AI+A +LILDI ++ P V E L+ L F A+FG++ V +LW+ +H++ L + LAF+ LP+ + Q + +R ++ S I F A I Q M W LLH+ T S
Sbjct: 85 FLIVTVAWAAHTRLFQVVGKTDDTLALLNLACMMTITFLPYTFSLMVTFPDVPLGIFLFCVCVIAIGVVQALIVGYAFHFPHLLSPQIQRSAHRALYR-------RHVLGIVLQGPALCFAAAIFSLFFVPLSYLLMVTVILLPYVSKVTGWCRDRLLGHREPSAHPVEVFSFDLHEPLSKERVEAFSDGVYAIVATLLILDICEDNVPDPKDVKERFSGSLVAALSATGPRFLAYFGSFATVGLLWFAHHSLFLHVRKATRAMGLLNTLSLAFVGGLPLAYQQTSAFA-RQPRDELER---VRVSCTIIFLASIFQLAM--W----TTALLHQAETLQPS 408
The following BLAST results are available for this feature:
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