TCONS_00011378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011378
Unique NameTCONS_00011378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011378 ID=TCONS_00011378|Name=TCONS_00011378|organism=Clytia hemisphaerica|type=transcript|length=625bp
cTCACGCGAACGAAAAGAGATTGGTAATGAGTCTGGCTGTCATTCACGGA
AAAAAGCCATCACATTGTAAATCGAATGTCTTCGATAAAAacacggagaa
aatttttgaggcGGATTgggtaaaaaaaacaacaaaaataatggTCATTG
AAGCTTCAAGGGCTGAAAATCTTCAACTCGGTGAAAAATGTCATGCCAGA
GTACTAGGAGAACAAGATGATTTGGCAAGTTTTTACATTTTGGATCCAAT
GCTTGGCTTTGAGACTCATAAAATGAAGCTTGTACCACTTCCAAAAAGAA
AACCCGATTTGAAAGCCGTGAAGAATATCGTCTCGTTGTACCGAAAGTAT
GGTGACGAACATTCAGTCCTCAATGAATTGATCATCTTACTTGGTGAATA
TTGGAATGCTTATTGCAGGAATAACATCATATCTGATATGATGGGCTTAA
AAGAACATcttTTAAGGTATATGCGTATATTCGATCCAAATGCTGGATTT
GTAATTGTTGGATGTCATAGATATTCATCTGAAAGCAACGGTGGAAAAGT
TCTAAGCACAAGAAAGTGGTATGGTTTTTAAATTTATCTATAAAATTGTA
AACCTTTTCAATTTATGAAGCTATC
Run BLAST on NCBI

protein sequence of TCONS_00011378-protein

>TCONS_00011378-protein ID=TCONS_00011378-protein|Name=TCONS_00011378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
HANEKRLVMSLAVIHGKKPSHCKSNVFDKNTEKIFEADWVKKTTKIMVIE
ASRAENLQLGEKCHARVLGEQDDLASFYILDPMLGFETHKMKLVPLPKRK
PDLKAVKNIVSLYRKYGDEHSVLNELIILLGEYWNAYCRNNIISDMMGLK
EHLLRYMRIFDPNAGFVIVGCHRYSSESNGGKVLSTRKWYGF
Run BLAST on NCBI

transcript from alignment at sc0000127:107762..113329-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011378 ID=TCONS_00011378|Name=TCONS_00011378|organism=Clytia hemisphaerica|type=transcript|length=5568bp|location=Sequence derived from alignment at sc0000127:107762..113329- (Clytia hemisphaerica)
CTCACGCGAACGAAAAGAGATTGGTAATGAGTCTGGCTGTCATTCACGGA
AAAAAGCCATCACATTGTAAATCGAATGTCTTCGATAAAAACACGGAGAA
AATTTTTGAGGCGGATTGGGTAAAAAAAACAACAAAAATAATGGTCATTG
AAGCTTCAAGGGCTGAAAATCTTCAACTCGGTGAAAAATGTCATGCCAGA
GTACTAGGAGAACAAGATGATTTGGCAAGTTTTTACATTTTGGATCCAAT
GCTTGGCTTTGAGACTCATAAAATGAAGCTTGTACCACTTCCAAAAAGAA
AACCCGATTTGAAAGCCGTGAAGAATATCGTCTCGTTGTACCGAAAGTAT
GGTGACGAACATTCAGTCCTCAATGAATTGATCATCTTACTTGGTGAATA
TTGGAATGCTTATTGCAGGAATAACATCATATCTGATATGATGGGCTTAA
AAGAACATGTAAGTGTTATATTCGTTTTCAATCGAGGTGAATCGATTCCT
CTTGCGCAATGACGAGTTGTTTTGATCACGTGACCTTCGGTAGATAAGGA
AAAAAGGCTCTTGTGTTGTGTAAAACTTTCCTCCCAGATGATGAAAGAAA
CCTTGAAATCTGAACTTTGGCCCTCCCTTAATAGCAAAAAAGATTGCTCA
GATGACTGATACAAAATCTCAAAATTTAAAATGCTATCTATGAGGCCAGA
CCTACGTAATCAATTAAACTTTTCGAACTAATCCCAGAGCCAGACGGTAC
TGTAAGTTCTAATGTCGACATTCCTCATCTAATTCCGACACCCTTTTCGG
AGATAAGAATAGCAGGAAGGTTTTCCCTTCTGACCACTAAGTAAAGAAAA
AAAGTTTCAATCAAGGATTCCGACCTTTCAATACACCTTTCCTGTAATTC
GTAAAACAGAATGTGGATGCATTATTTTGATGCTCTCCCACATGCACCGT
TTGGTCTCTACAAACCTAGACATAACTAATCGAACAATTCGAATTAATTG
AATTTAGTCGAAGGTATTCGCAGTATTAGAATGCGATTAATCGAACTAAT
AGAAATCAGAAAAATCTTGGAAAATTCAACTAGTTTGATGAATTTGATAA
GTCTTCAATTAGTTCGATTAGTTCGATTATTGTTCGATAAGCGTTCGATT
AAGGTTCGATTAATATTCTATCACTGTTTGATTATAGTTTGATGACTTTG
AATAAAGTTTGATTATTTTGTTTTCTTAAATGCGCCACCATAGCGGCAAC
TACAAGCGTGATTTCCATTTACTTTAAATCCCAGAGAGGTGAAACACTTG
GATGGGAAATAAATCTACTTAATTTTCCATTCGGAACACCCGTGCGTGGC
TTTTGCACAAATGCTGGAATCAAAGTATAATCGAATGTTAATCGAAGTAA
ATCGATCAATAATCGAAGTAATTGAGAAAAAAAGTTGGAAAATTCAATAA
CTTTGATTATCGTTCGATGGCTTCGTAGGGTGTCCACGGGACCTTGAAAA
CCTTGAAAACCTTGAAAATGAACCACCTAACCTTGAAAACCTTGAAAACT
ATCAATTTTCTGGGAAAAACCTTGAAAACCTTGAAAAATCGTTAAAAACC
TTGAAAAGCACTTCTTCCTATTCATCCTTTTATCATACAATTTTTCAATA
GGGCAGTGGCGAGTAACTCTTATAGGTTCAGATTAGTTTTGAGTTTGAGT
GCTAGATTTTTTTCATTCATTATATACTGTATACTATATTACATGTTTTT
CTTTATAAGCAAGCGTATGTCCCTTGGTTAGGCTCGTGTATGCTTAAGTT
CTCAAAGCATTCAGGCATAGCTTATGCTTATTATATGCTTATGAATCATG
CTTATGATTCACCTCGAGCCAAGTTTTTAGTGAAATTTCAGAAATTTTGT
AAAAATTTGTTCAGATTTTGGGAGCAGTGGAATGTAGGAAACCAGAGGAA
ACCGTGGAAAGTCTTTTTTTTACTTGACCTCTACCAAACCTTTTTAAACA
GATAAAACAACTGGAAAAATATTTCAGGCTGACATGCTTATGTTATGTTT
AGGAATTCTGCAAATCTGAGCCTTCATATGCTTAAAAACGTTATGCTCAT
AAAAAAAACAACATGTATGTTGGTTATTATCATGAACATATAAAGTACTG
GACCTCTAATTCCTTTGTATTTTTGTAATAAGTACTGCTAGTTCGTTGCC
CTCTCTTAGAAACATAAAATGAACAATAAATTTGGATGATATAGCTCTTG
GGAATACCTTGCTAACGACCTCAAAACTTGGACTAAAGTCTCTGTTGTTC
TACTCTTCTCAAGTCTTTTATCTATATCATCCGACTAATATTTCTAAATT
TTGACTCAAAAGTATGGAATAATTTCACATCAGTTTGGGGTTCAAATTAT
AATATTCGTAAGACACAAGGCTCTCAACTTTGGCTTACTATATCTTCAAG
TCATAAAAAAGTGATTCAAAAGTATACACACAGTTGAAATTCTGAATTTA
GCGTTGAAAAATGTTTATAAAACTATGTTTAGCAAACTTATGAAAAAATT
TCGTCAAATTTCACCGGCTCAATACTCGTAAAAAAATAAATTTGCCGGTC
TCGAAAATCTATTCGCCTAATCTAACTTATTTTTATCCAGACATTCAATA
AGTGAAGGAAATTTCCAAAAAACTGTCTCCCGCGCTTAAAACATTTAGAG
AATTCCATATTCACCTGTTTCTGTTGCAATTCTGTCGCAACGAATGCAAC
ATATTCTTTTATCATTAGCTGAGTTTTTCTCACTAGTTTTCAGTTTGCAT
GAGCCCTAAGAAATCGACTGTTCCCCAATTTTCAAATCGCTTCAGGGCCG
TTCATCAATAAATAATTTCCTTAAAACAACTCTTTTGCCGACTGATTTTT
GTAGAAAAAAAACAATCAAAAACAAGGCCTTTTTTATCAAAATCAAAATT
TTCTCTCGTCGGCCACTGTAAACATTTGATTTTTGCTTCTTTCTTTATTT
CTACAGTTGGAAGACTAGGGAACTGGAGTCAAAAATTCTTTTTGTGGTAT
CGTTTTCGAGAGGGAGATAGGAATTTAACTGTGGAAATAATTCCCCGGCC
ACCAAAAGCGAATAAATTTGCCGTCCTCTATTTTTCTTTCACCAACCACT
CTGAAAAAAAAACAAAACCACTGTAGAGAGCCATGTCAACTGAGTATCAA
AAAACCTTGAAAAGTGCCAAGATCTTTGCCAAAAAACCTTGAAAAACCAC
TTAAAATGCGTTGTTACTAAAAGTGGTAACGGTAGGTAACGATAGGTAAT
GACAGAGCTAATGGTTCCGGTGATTTTGGGAGAACCTAACGACTCTGGTT
AATCTATTCAAGAATTTTGGAAATCTGATGATTGTACAGCAGGATCTGAT
CGTTCTGGTGAATATGACTGCGGAGATAATAAATCCAATCGTTTTTATTG
TAAATTGGTGTTTGTGAATCGCCATCATCGCCTCATCGCCGAAAGTCAAT
ACCCCTTGAATCGAAAATTATCGATGGATTTCTTATAAAGATGATGCTTA
CAAAAAATGCACAATCCCTAACTTGCATTCACCTGCACAACAGTACCATT
GGTGAGTGCAGCATTGCATTCACCAGTACATCATCATCGATTCCACCATT
GAATTCACCAGAACCATTGATTCCCCATCATTGCATTGACCAGCACCATT
GATTCCATCATTGTATTGACCAGCACCATTGATTCTATCATTGCATTGAC
CAGCACCATTAATTCCATCATTGCATTGACCAGCACCGTTTATTCCATCA
TTTCATTGACCAGCACCATTGATTCCATCATTGTATTGACCAGCACCATT
GATTCCATCATTACATTGAACAGCACCATTTATTTCATCATTGCATTGAC
CAACACCATTGATTCACCAAAGCCGTCAAATCTTTCAGTTTATTCACAAA
CACCAATTTACAATAAAAACGATTGGATTTATTATCTCCAGAGTCATATT
CACCAGAACGATCAGATCCTGCTGTACAATCATCAGATTTCCAAAATTCT
TGAATAGATTAACCAGAGTCTTTAGGTTTTCCCAAAATCACCGGAACCAT
TAGCTCTGGCGCAGAAACTTACAAATTTTGATAGTTCGACACCTCAGGGC
CACCATTTTCAGCTTTTTCCCCATCGTTACTTCGTTACTTTTTCGTTACC
CCTCGTTACTTGTGTTACTTCATCGTTACCAACTGTTACTTCATCGTTAC
CTGTCATTACCTACCGTTACTTGTCGTTACCTATCGTTACCTACCGTTAC
CACTTTTAGTAACAACGCTTAAATTGACTAAAAAAATCCGTAGACACCCT
GCTTCGATTTATTGAGAATCAATCGAAGGATAAAATTTGGGGGAAACCAA
TTTTCCAATTTTGAATAGGTGAGGGGGAAAGTGAAAATTTGAATAGTAAA
GGGGGGAAAAAAAGAGGGGGGAAAACATCGATAGTTGGCAAATTTGGTGG
GGGGAAGTGTGAAGTCACTTCGACTTTATCTCAGCAACCAAGGTCAGTCC
ACATGATATCATGTGATTAGATCATGATTGAAACATTAACCAATTTTCGT
TCTATTTTGTCTAGTATTCCTTTTGCAGCAAAATTTTACGTTTGTGTCAG
GTTGAAATTTGAGAAATTTATATCGGTATATGGGGGGAACTGATATTTTC
AGAATTTTCTGGGGGTGAGCAAAAAACCCTGGAGGACACTATGGTACTAA
ATTTGGTCTTATTTGTTTGGATATTCGTAGTCTAAACTTAACTAATGAAC
TCTTCAGATGACTGCAAAGTTGAAAATTGTTAGAAAAAAAAATATTTTTC
AGAAATTTTGGTTGCTAGGCAACCTAGGCTGGTTGCTAGGAGCAAATATC
ATTAACTTTCGATTATGTATTCTTCAGACTCTACATTTCATATGCTTTCA
GAAAATATATAGTTTTACAGGTGTATATAAAACCATCAAAAAGTCATTCT
TCATCGCATTCGTGTAGGTGTCAAAAAACCCTAAAATACCAAAATAATGT
GCGGATCCAAAGGGTTAACAAGCAGTTCTTAAATCTACATAATAGGCTAG
TACACTTCTTTTGACGTATAAATGGCCATGCCAAAGGCCCCCAGTTTTTA
ACGCCAAACTTATGTCCTTTTTGGAGTTGGACATGCCATAAGTTACACGA
GAACCATGGAGGTTTGGCCTAATAAAGGGGATTTTGAAAAATTTAGTGCA
AGATGGCTGGAAAATGTACGTAAAGAAAATGAAGATTTTTTTGCAGAAAT
ATAATGAAAATCTATATTATATCTGAAATTAATTATTAGTAGCTCTCGCC
TTGCATGATGAGTACAATATATTCAAAGTACATATCTTTTTTCAATTTCA
GCTTTTAAGGTATATGCGTATATTCGATCCAAATGCTGGATTTGTAATTG
TTGGATGTCATAGATATTCATCTGAAAGCAACGGTGGAAAAGTTCTAAGC
ACAAGAAAGTGGTATGGTTTTTAAATTTATCTATAAAATTGTAAACCTTT
TCAATTTATGAAGCTATC

Coding sequence (CDS) from alignment at sc0000127:107762..113329-

>TCONS_00011378 ID=TCONS_00011378|Name=TCONS_00011378|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at sc0000127:107762..113329- (Clytia hemisphaerica)
CTTTTAAGGTATATGCGTATATTCGATCCAAATGCTGGATTTGTAATTGT
TGGATGTCATAGATATTCATCTGAAAGCAACGGTGGAAAAGTTCTAAGCA
CAAGAAAGTGGTATGGTTTTTAACACGCGAACGAAAAGAGATTGGTAATG
AGTCTGGCTGTCATTCACGGAAAAAAGCCATCACATTGTAAATCGAATGT
CTTCGATAAAAACACGGAGAAAATTTTTGAGGCGGATTGGGTAAAAAAAA
CAACAAAAATAATGGTCATTGAAGCTTCAAGGGCTGAAAATCTTCAACTC
GGTGAAAAATGTCATGCCAGAGTACTAGGAGAACAAGATGATTTGGCAAG
TTTTTACATTTTGGATCCAATGCTTGGCTTTGAGACTCATAAAATGAAGC
TTGTACCACTTCCAAAAAGAAAACCCGATTTGAAAGCCGTGAAGAATATC
GTCTCGTTGTACCGAAAGTATGGTGACGAACATTCAGTCCTCAATGAATT
GATCATCTTACTTGGTGAATATTGGAATGCTTATTGCAGGAATAACATCA
TATCTGATATGATGGGCTTAAAAGAACATCTTTTAAGGTATATGCGTATA
TTCGATCCAAATGCTGGATTTGTAATTGTTGGATGTCATAGATATTCATC
TGAAAGCAACGGTGGAAAAGTTCTAAGCACAAGAAAGTGGTATGGTTTTT
AACACGCGAACGAAAAGAGATTGGTAATGAGTCTGGCTGTCATTCACGGA
AAAAAGCCATCACATTGTAAATCGAATGTCTTCGATAAAAACACGGAGAA
AATTTTTGAGGCGGATTGGGTAAAAAAAACAACAAAAATAATGGTCATTG
AAGCTTCAAGGGCTGAAAATCTTCAACTCGGTGAAAAATGTCATGCCAGA
GTACTAGGAGAACAAGATGATTTGGCAAGTTTTTACATTTTGGATCCAAT
GCTTGGCTTTGAGACTCATAAAATGAAGCTTGTACCACTTCCAAAAAGAA
AACCCGATTTGAAAGCCGTGAAGAATATCGTCTCGTTGTACCGAAAGTAT
GGTGACGAACATTCAGTCCTCAATGAATTGATCATCTTACTTGGTGAATA
TTGGAATGCTTATTGCAGGAATAACATCATATCTGATATGATGGGCTTAA
AAGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006380XLOC_006380Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011378-proteinTCONS_00011378-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011378-exon-sc0000127-1575043694:112872..113329TCONS_00011378-exon-sc0000127-1575043694:112872..113329Clytia hemisphaericaexon
TCONS_00011378-exon-sc0000127-1575043694:107762..107928TCONS_00011378-exon-sc0000127-1575043694:107762..107928Clytia hemisphaericaexon
TCONS_00011378-exon-sc0000127-1510915933:112872..113329TCONS_00011378-exon-sc0000127-1510915933:112872..113329Clytia hemisphaericaexon
TCONS_00011378-exon-sc0000127-1510915933:107762..107928TCONS_00011378-exon-sc0000127-1510915933:107762..107928Clytia hemisphaericaexon
TCONS_00011378-exon-sc0000127-1491911889:112872..113329TCONS_00011378-exon-sc0000127-1491911889:112872..113329Clytia hemisphaericaexon
TCONS_00011378-exon-sc0000127-1491911889:107762..107928TCONS_00011378-exon-sc0000127-1491911889:107762..107928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:107762..113329 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.1517	32.6004	7.43526	2.55071	19.7815	16.904	23.2447	21.2482	11.4268	12.5516	10.3684	8.97409	13.1021	11.8396	11.7192	15.071	11.3959	16.0769	13.6893	12.3327	15.4194	12.6691	54.27	46.6723	16.6648	21.4922	13.3312	10.2337	40.7974	48.2205
Blast
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BLAST of TCONS_00011378 vs. Swiss-Prot (Human)
Match: KMT5C (Histone-lysine N-methyltransferase KMT5C OS=Homo sapiens GN=KMT5C PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.479e-21
Identity = 48/129 (37.21%), Postives = 73/129 (56.59%), Query Frame = 3 
Query:  183 EKCHARVLGEQDDLASFYILDPMLGFETHKMKLVPLPKRKPDLKAVKNIVSLYRKYGDEHSVLNELIILLGEYWNAYCRNNIISDMMGLKEHLLRYMRIFDPNAGFVIVGCHRYSSESNGGKVLSTRKW 569
            ++  AR L E DDLA+  +LDP LGF THKM + P+P  +   + +++ +  + +  D  +    L   LG +   Y ++        LK H+ RY+R F P +GF I+ C RYS E+NG K++STR W
Sbjct:    4 DRVTARELCENDDLATSLVLDPYLGFRTHKMNVSPVPPLR-RQQHLRSALETFLRQRDLEAAYRALT--LGGWTARYFQSRGPRQEAALKTHVYRYLRAFLPESGFTILPCTRYSMETNGAKIVSTRAW 129
The following BLAST results are available for this feature:
BLAST of TCONS_00011378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KMT5C2.479e-2137.21Histone-lysine N-methyltransferase KMT5C OS=Homo s... [more]
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