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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011376 ID=TCONS_00011376|Name=TCONS_00011376|organism=Clytia hemisphaerica|type=transcript|length=6214bpRun BLAST on NCBI protein sequence of TCONS_00011376-protein >TCONS_00011376-protein ID=TCONS_00011376-protein|Name=TCONS_00011376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1363bp MVVVEILLFVLSLSTQVLANAGDQILFSNRQDIRRFNFGLQNYTLILGGLRun BLAST on NCBI transcript from alignment at sc0000127:73539..99149- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011376 ID=TCONS_00011376|Name=TCONS_00011376|organism=Clytia hemisphaerica|type=transcript|length=25611bp|location=Sequence derived from alignment at sc0000127:73539..99149- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000127:73539..99149- >TCONS_00011376 ID=TCONS_00011376|Name=TCONS_00011376|organism=Clytia hemisphaerica|type=CDS|length=53196bp|location=Sequence derived from alignment at sc0000127:73539..99149- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011376 vs. Swiss-Prot (Human)
Match: LRP6 (Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2) HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0 Identity = 419/1336 (31.36%), Postives = 680/1336 (50.90%), Query Frame = 1
Query: 259 ILLFVLSLSTQVLANAGDQILFSNRQDIRRFNF--GLQNYTLILGGLEYVRSLDYDYKERKLFFISLHNSEKTMIQHTSFVDQNVKPKTIVDTMTQLDNDLKSLSVDWLTKKIYYTDLERKRVEVANYDGTSKRVIVSTGLIQPEGLALFPQKGLMFITDWGSQKKIERFNMDGSNRKVIHNEPTGAWGRSITIDYEASLIYWGDTKSKQIHAMTIDG---KVVKKFELQHPPNYISVSSSMLYWSD---GALXXXXXXXXXXXXTIHMKDFQISDLRVFESYRQPEVTTPCDVNNGNCSHLCLLK--YGGYTCACPTGVSLKEDNKTCEDGMKKFLIIARKFNIRLLSFDADESVDFRLDIAKQNIQMVHGVIYDVEYKRVYWTNYGCAPDTQTTQLKDCSQSGSINSIFINGTGFKQFLTADIEEPDQLACDWVARNIYWTDGMLGRIEVARLDGTARKVIISKNLQRPRGIAIDAADAKIYWSDWGDNPKIERADMNGDNREVLVDSRNIVEPNCIALDTQHRRLYWVDSKKYTVSYIDLYEATRKVRTIYEQCYHPFGITIFEKYAYWTDWSRKLYRMRITDKKNHKERIIIDVIKDVMGVSSVDSNLKYSLNPCYYKTNNCSHFCFVKPTKGRAMCECPSHMELGADERTCKVPSGYLVYSTNTEIHKTSIDTFNFDFRLLSEEMTNHAVFSIDFMREKIIWYVEETQGERSSIRSAYLNGTNVKTVMHVDSASYDIFTLDWISGNIYLAK--SNYIEVVNHDGTFRKKLIYNENLMNPKCIMVDPRLRKLYWIQKRNGSYLYQSNLDGTEIEALVKMNPDI-----CAVDFNTGVIYCLSNHRSLI-AFDPVHRNMTVIRSYVTKWTSLAIFHDTIIFTDYSSNVIGQISTKPTNQEPAKDLLKVDQPFGVQILHRDVQIGTNACFLKNGGCQQFCFAVTEKDVKCGCATHYALGEDGQSCVDPQSFLIANQKNNFIRILFAD-GVPDHLLPVTNATNVDSIAFDYIRDKVYWLDKTTNQIHCINQDGMSGFSTVNLINKKSSKNDIQKPFDFALDPFSNSLFWTDAGRNTINFYNIHTGCRGIVFNHKDYSPRKIVVRPEIGRLFWTSADESKSTQTDLVSISFAGTDKNDLASLKRSKIVDLVIDDSSQLLYYLDTEKNKIVSMSLQGQLQFQTLIEAKFNPVSLATNEQDIFWGD--NHMIYKVSKSATNQNSVVFHGRYESLSEIIAVN--TSRKNFVHPCINNNGGCSHICRISYEVSLSTKNTPPKAICGCPINYRLNENHKNCSIVERC--QLFELFCKEDSRCIPSSKQCDGRKDCSDGQDE 4191
+L +L+ S VL A +L++NR+D+R + G +N T+++GGLE ++D+ + +++ + + I+ T F +V + D L+ DWL +K+Y+TD E R+EV+N DG+ ++V+ L QP +AL P G M+ TDWG KIER MDGS+R +I N W +T+DYE +YW D K IH +DG + V K L HP +++ +LYW+D ++++ + G IH F D+ F RQP T PC ++NG CSHLCL+ Y CACPTGV L E+ KTC+DG + L++AR+ ++R +S D + D L + ++I+ + YD +YWT+ + +I FI+G+G + +TA I PD +A DWVARN+YWTD RIEV RL+GT RK++IS++L+ PR I +D +YW+DWG+ PKIERA ++G +R VLV++ ++ PN +ALD ++YW D+K + ++ R+V + ++ H FG T+ Y YWTDW R+ + K++ + +IID + D+MG+ + + + NPC + CSH C +P R C CP EL +D +TC VP +L++S +I + S++T N + + + + D +I W T +I A++NG+ ++ V+ + +DW+ N+Y A +N IEV DG R+ L++ ++L +P+ + +DP +YW + + ++ +DG+E LV P++ +D+ +Y +LI + + + N VI + L + D I +TD+S I + + K + Q +D + + H Q G N C NG C C AV CGC HY+L D ++C P +FL+ +QK+ R++ + PD +LP+ + NV +I +D + ++YW+D N I +DG GF+ V ++ S+N +P+D ++D +S ++WT N IN + G+V + PR +VV PE G +++T+ E +S + + ++ GT++ L SK + L +D L++ D++ +I S L G + PV L E ++W D MI K+ + + V R LS+I AV ++ HPC +NGGCSHIC + + + C CP++ L ++ +C C Q F F E CIP + +CDG +C D DE
Sbjct: 4 VLRSLLACSFCVLLRAAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYW---SDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG----LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI-YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHP-FALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL--EDIRHAIAIDYDPVEGYIYWTD---------------DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT-SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV-LVEDKIPHIFGFTLLGDYVYWTDWQRR--SIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLR--CACPIGFELISDMKTCIVPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYW----TDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSI-ERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVV--VSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE-RSPKIERAALD--GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKV-QARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTR---------CSCPMHLVLLQDELSCGEPPTCSPQQFTCFTGEID-CIPVAWRCDGFTECEDHSDE 1282 The following BLAST results are available for this feature:
BLAST of TCONS_00011376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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