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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011059 ID=TCONS_00011059|Name=TCONS_00011059|organism=Clytia hemisphaerica|type=transcript|length=1271bp
ccctattACCCCCCGGATACATTTCATGCACGTGTTGAAGGTATTTGAAG
TTGTTGAAGAATTCAATATCATAACgcagtgaatctaaaaatagagtACG
TAAAAACTTTTTGTACGACTTTCAATCCCATCCTCCTTTGCGTTGATCGT
TGATTGTTTGCATCTTTTAAAAGTGAACTTTAGGCTTGAACGTCGTACCA
GTCGTACACTTTCAGCTAAAACAATTATGAGGTTTctaatttcttttcat
ttaataaatttttaGGAAGTGAAAATGCTGACTGACGTTAAAGACCGAAA
CCCGGCTGTCTTTAACGAATTGCAACTTCAAAGGTCATTTGTCGATATTA
AAGGACAGCAGAAAGAATGCACTGTCGCTAGCAAATTTCCAATCAAAGGA
CAGCAGCAAGAATGCACTGTCGCTAGCAAATTGCCAATCAAAGAACAGCA
GCAAGAATGCACTGTCGCTATCAAATTGCCAATCAAAGGACAGCAGCAAA
AATCGATTGTCGCTGGCAAATTTCCAATCAAAGGACAGCAGAAAGAATGC
ACTGTCGCTAGCAAATTGCCAATCAAAAAACAGCAGCAAGAATGCACTGT
CGCTAGCAAATTTCCAATCAAAGAACAGCAGCAAGAATGCACTGTCGCTA
GCAAATTGCTTATCAAAGGACAGCAGCAAAAATCGATTGTCGCTGACAAG
TTTCCAATCAAAGGACAGCAGCAAGAATGCACTGTTGCTAGAAAATTGCC
AATCAAAGAACAACAGCAAGAACGCACTGTTGCTAGCAAAATTCCAATCA
AAGGACAGCAGCAAGAATACACTGTCGCTAGCAAATTTCCAATCAAAGAA
CAGCAGCAAGAATACACTGTCGCTAGCAAAATTCCAACCAAAGGACAGCA
GCAAGAATGCACTGTCGCTAGCAAATTTCCAATCAAAGGACAGCAGAAAG
AATGCACTGTCGCTGACAAATTACCAATCAAAGGACAGCAGCAAAACCGA
AACGCCAAAAAGCgtcgacgacgacgacgacgaaattgagaaaatataaa
atcaaattccttttaaatttataaaagattttcacCTTGGAACTTTATCA
ATTTATTTACTATGCTTATTTTATGATccacaaaaaaagaagaaaaaaaa
tttgaattaggACTTATTTGTTAGGAATTATTTGATTTAggactttattt
atttatttgatttgatttgtgtATTTTATCCACCATTGTAAATAACTATA
TGAAAAATTTTAATACCgggt Run BLAST on NCBI protein sequence of TCONS_00011059-protein >TCONS_00011059-protein ID=TCONS_00011059-protein|Name=TCONS_00011059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MLTDVKDRNPAVFNELQLQRSFVDIKGQQKECTVASKFPIKGQQQECTVA
SKLPIKEQQQECTVAIKLPIKGQQQKSIVAGKFPIKGQQKECTVASKLPI
KKQQQECTVASKFPIKEQQQECTVASKLLIKGQQQKSIVADKFPIKGQQQ
ECTVARKLPIKEQQQERTVASKIPIKGQQQEYTVASKFPIKEQQQEYTVA
SKIPTKGQQQECTVASKFPIKGQQKECTVADKLPIKGQQQNRNAKKRRRR
RRRN Run BLAST on NCBI transcript from alignment at sc0000119:241252..242522 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011059 ID=TCONS_00011059|Name=TCONS_00011059|organism=Clytia hemisphaerica|type=transcript|length=1271bp|location=Sequence derived from alignment at sc0000119:241252..242522 (Clytia hemisphaerica)
acccGGTATTAAAATTTTTCATATAGTTATTTACAATGGTGGATAAAATa
cacaaatcaaatcaaataaataaataaagtccTAAATCAAATAATTCCTA
ACAAATAAGTcctaattcaaattttttttcttctttttttgtggATCATA
AAATAAGCATAGTAAATAAATTGATAAAGTTCCAAGgtgaaaatctttta
taaatttaaaaggaatttgattttatattttctcaatttcgtcgtcgtcg
tcgtcgacGCTTTTTGGCGTTTCGGTTTTGCTGCTGTCCTTTGATTGGTA
ATTTGTCAGCGACAGTGCATTCTTTCTGCTGTCCTTTGATTGGAAATTTG
CTAGCGACAGTGCATTCTTGCTGCTGTCCTTTGGTTGGAATTTTGCTAGC
GACAGTGTATTCTTGCTGCTGTTCTTTGATTGGAAATTTGCTAGCGACAG
TGTATTCTTGCTGCTGTCCTTTGATTGGAATTTTGCTAGCAACAGTGCGT
TCTTGCTGTTGTTCTTTGATTGGCAATTTTCTAGCAACAGTGCATTCTTG
CTGCTGTCCTTTGATTGGAAACTTGTCAGCGACAATCGATTTTTGCTGCT
GTCCTTTGATAAGCAATTTGCTAGCGACAGTGCATTCTTGCTGCTGTTCT
TTGATTGGAAATTTGCTAGCGACAGTGCATTCTTGCTGCTGTTTTTTGAT
TGGCAATTTGCTAGCGACAGTGCATTCTTTCTGCTGTCCTTTGATTGGAA
ATTTGCCAGCGACAATCGATTTTTGCTGCTGTCCTTTGATTGGCAATTTG
ATAGCGACAGTGCATTCTTGCTGCTGTTCTTTGATTGGCAATTTGCTAGC
GACAGTGCATTCTTGCTGCTGTCCTTTGATTGGAAATTTGCTAGCGACAG
TGCATTCTTTCTGCTGTCCTTTAATATCGACAAATGACCTTTGAAGTTGC
AATTCGTTAAAGACAGCCGGGTTTCGGTCTTTAACGTCAGTCAGCATTTT
CACTTCCtaaaaatttattaaatgaaaagaaattagAAACCTCATAATTG
TTTTAGCTGAAAGTGTACGACTGGTACGACGTTCAAGCCTAAAGTTCACT
TTTAAAAGATGCAAACAATCAACGATCAACGCAAAGGAGGATGGGATTGA
AAGTCGTACAAAAAGTTTTTACGTactctatttttagattcactgcGTTA
TGATATTGAATTCTTCAACAACTTCAAATACCTTCAACACGTGCATGAAA
TGTATCCGGGGGGTaataggg Coding sequence (CDS) from alignment at sc0000119:241252..242522 >TCONS_00011059 ID=TCONS_00011059|Name=TCONS_00011059|organism=Clytia hemisphaerica|type=CDS|length=765bp|location=Sequence derived from alignment at sc0000119:241252..242522 (Clytia hemisphaerica)
tcaatttcgtcgtcgtcgtcgtcgacGCTTTTTGGCGTTTCGGTTTTGCT
GCTGTCCTTTGATTGGTAATTTGTCAGCGACAGTGCATTCTTTCTGCTGT
CCTTTGATTGGAAATTTGCTAGCGACAGTGCATTCTTGCTGCTGTCCTTT
GGTTGGAATTTTGCTAGCGACAGTGTATTCTTGCTGCTGTTCTTTGATTG
GAAATTTGCTAGCGACAGTGTATTCTTGCTGCTGTCCTTTGATTGGAATT
TTGCTAGCAACAGTGCGTTCTTGCTGTTGTTCTTTGATTGGCAATTTTCT
AGCAACAGTGCATTCTTGCTGCTGTCCTTTGATTGGAAACTTGTCAGCGA
CAATCGATTTTTGCTGCTGTCCTTTGATAAGCAATTTGCTAGCGACAGTG
CATTCTTGCTGCTGTTCTTTGATTGGAAATTTGCTAGCGACAGTGCATTC
TTGCTGCTGTTTTTTGATTGGCAATTTGCTAGCGACAGTGCATTCTTTCT
GCTGTCCTTTGATTGGAAATTTGCCAGCGACAATCGATTTTTGCTGCTGT
CCTTTGATTGGCAATTTGATAGCGACAGTGCATTCTTGCTGCTGTTCTTT
GATTGGCAATTTGCTAGCGACAGTGCATTCTTGCTGCTGTCCTTTGATTG
GAAATTTGCTAGCGACAGTGCATTCTTTCTGCTGTCCTTTAATATCGACA
AATGACCTTTGAAGTTGCAATTCGTTAAAGACAGCCGGGTTTCGGTCTTT
AACGTCAGTCAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011059-exon-sc0000119-1491911889:241252..242522 | TCONS_00011059-exon-sc0000119-1491911889:241252..242522 | Clytia hemisphaerica | exon |
| TCONS_00011059-exon-sc0000119-1510915933:241252..242522 | TCONS_00011059-exon-sc0000119-1510915933:241252..242522 | Clytia hemisphaerica | exon |
| TCONS_00011059-exon-sc0000119-1575043694:241252..242522 | TCONS_00011059-exon-sc0000119-1575043694:241252..242522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000119 | supercontig | sc0000119:241252..242522 . |
Blast
The following BLAST results are available for this feature:
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