TCONS_00011028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011028
Unique NameTCONS_00011028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011028 ID=TCONS_00011028|Name=TCONS_00011028|organism=Clytia hemisphaerica|type=transcript|length=408bp
tgGAGCCTTTGGTGAAACGATCAAAATTTGGCAGAGAACGGATGCGTTGC
ATGGGTTGTCGGAATTTTCAATTGAAAGTTCAAAGGTTGAATGAAAGCCA
GAAGGCAAACGAGTATGTTAAAGAACAACTTCGAAGTCAACTGAATGAGA
TGTTTGAGTATAAAACCAATTACAACATGCTTGCTGATCAATATCAAATT
GTTTCAACACAAAACCAAGAGCTGAAAAGATGCGAAACTCAATGGCAGCA
AAACTTCCGACTTGGTTATGACGAATTTGTACTGCTCAGGGAGCGTAATT
CATCTCTTGAgcaagaaaatatgaaattgaaaGCCACGATGAAAAAAGGA
TGTGAAAAATATGGTGAACTTCACAATTCGAGTCAAATAGCAAACGAAAG
AATTGCCA
Run BLAST on NCBI

protein sequence of TCONS_00011028-protein

>TCONS_00011028-protein ID=TCONS_00011028-protein|Name=TCONS_00011028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
EPLVKRSKFGRERMRCMGCRNFQLKVQRLNESQKANEYVKEQLRSQLNEM
FEYKTNYNMLADQYQIVSTQNQELKRCETQWQQNFRLGYDEFVLLRERNS
SLEQENMKLKATMKKGCEKYGELHNSSQIANERIA
Run BLAST on NCBI

transcript from alignment at sc0000119:221525..223643-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011028 ID=TCONS_00011028|Name=TCONS_00011028|organism=Clytia hemisphaerica|type=transcript|length=2119bp|location=Sequence derived from alignment at sc0000119:221525..223643- (Clytia hemisphaerica)
TGGAGCCTTTGGTGAAACGATCAAAATTTGGCAGAGAACGGATGCGTTGC
ATGGGTTGTCGGAATTTTCAATTGAAAGTTCAAAGGTTGAATGAAAGCCA
GAAGGTAATAATACATTTTATAGCCCTGCAATACAACTGTCAATCATTTT
TAAGAAAACTGATTGGATGATTAATGTCACGTGGCCGGTCAATATTTCTC
CATAGTGACCAGTTATGAAATTGACATCATTAAAATGTCAATTACTTTAT
TTTTTCAGGGCTATAAATGGATTATTAACCTCAGAAGCCGGTCTCTCTTG
CAAAATATCGACCTCGTTCGCTCGTTCCAATACGTCGCGAACTCGGTCGA
TATTTTGCCAGAGAGACCGGCTTTTCGGTTAATAATCCATAAAAAGTTCG
TAAGTAGGCTGGCTCACTGAGTACCAACTCATCTATCATTCAGACTAGAT
AAGGGCTGACTATTAAGTTCAAACCCGAAGGTCTAATCTTCGAAGAAAAA
AGTGAAGCTCTAAGATTTGCACCATAGAATAAGAAAACCACGGCTTCCTT
ATACTATGGCACCACTTTTGAGATGATAGTTGTTTTCCATGCGATGGGTT
TTATTTTCCATCTGGTGTTCGTGTTGTGAAAACTAACTGCGAGTCACCCG
TTTCAGTTGAGAAATGACAGGCTTTATTTCTCATCAAAGCTCCATCAACT
CCTTTGCGGTTTTAAACTCAAAAAAACTAAATTATTGGACTGAAACCGTT
TTTAAACAATCCCTAATACCAGTGGTAGGTAGTGGGGGAATGGGGTTGGG
ATTGAGTCTAAGCGCTTGCTTTGTTTCCCATACGATGGGCTTTATTTCTC
ATCAAAGCGGCTCAATTCCTTTGCAACTTTAAACTCAACAAAACTAAAAC
ATCAGAATGAAATTTCTTCAGACTGGATCAGCTTTTAGACAATCACTAAT
AGCAGTGGTAGGAAATGGGGGGAGTGTCACTAGATTAAAAGGACAGCGTA
TCAGCAATATTTTTTCGTCCCTTTCATGACACAGGCAAACGAGTATGTTA
AAGAACAACTTCGAAGTCAACTGAATGAGATGTTTGAGTATAAAACCAAT
TACAACATGCTTGCTGATCAATATGTAAGTTATCTATCCTTGTTTAAAGC
CCCTGGGTACTAGGTTCGCGAGGTGACAGGTATGTCCCAAGCCAAAATCG
AAAATTGACCCGAGAAACATTTTGACATTTTTGAGACCGTTTGAGAGAAT
TTTTGTCTTCCAGAAAATTGTGACCCTTGAGAGGGAAATTATCGATTTTA
ATGATTTTGAGACCCTTTCAGCGACTAACCTATGAATTTGTACCCATTTG
AGGGATTATCTTCTTTTAACTTTTAGCAAATTGTTTCAACACAAAACCAA
GAGCTGAAAAGATGCGAAACTCAATGGCAGCAAAACTTCCGACTTGGTTA
TGACGAATTTGTAAGTTACTAAACTGTTACAGTTTTCTTTCTGTCTGGGC
TTTTCTAGAATAGGAAAAACCCCATTTTTTGATAATTTTGTGACCCTTAT
TGGGATGATAGAAGACTAGAAAACTAGTCTGTTAATTAATCATGTCACAG
GCTAAAATAGGAGCTGTGTTAGAGTGAAAGGAAAAGTTGGTTAGAGGATC
TGATCATACCAAAAAAAATTCTTCCTACGCTTACATCCAATCAAATTTTG
GCTTGACTACTTATTTGCTACTCACCACGCCCATATCCAGACTGCAGAAA
AACAGATTTTTCCAGAGACAATTTCGCATAACTTTCGAGTGTACTTTCTT
TGTAGGTACTGCTCAGGGAGCGTAATTCATCTCTTGAGCAAGAAAATATG
AAATTGAAAGCCACGATGAAAAAAGGATGTGAAAAATATGTAAGTATTTT
CAATGGGTGGTTATTTGCTTTTAAATCTAAGAAGTTCGACCTGGTTCGAT
ATTGAGCGAAAGTTTTTTCTCGTTTATAAAATAAATCATATCGGCTCACA
ACAAAAGTCCAACAACTATTTTATACTCCTTTTAATCCTTAACATTTAAT
TTAAAGCTCAAAACAAATTTCAGGGTGAACTTCACAATTCGAGTCAAATA
GCAAACGAAAGAATTGCCA

Coding sequence (CDS) from alignment at sc0000119:221525..223643-

>TCONS_00011028 ID=TCONS_00011028|Name=TCONS_00011028|organism=Clytia hemisphaerica|type=CDS|length=2025bp|location=Sequence derived from alignment at sc0000119:221525..223643- (Clytia hemisphaerica)
GGTGAACTTCACAATTCGAGTCAAATAGCAAACGAAAGAATTGCCGTACT
GCTCAGGGAGCGTAATTCATCTCTTGAGCAAGAAAATATGAAATTGAAAG
CCACGATGAAAAAAGGATGTGAAAAATATCAAATTGTTTCAACACAAAAC
CAAGAGCTGAAAAGATGCGAAACTCAATGGCAGCAAAACTTCCGACTTGG
TTATGACGAATTTGCAAACGAGTATGTTAAAGAACAACTTCGAAGTCAAC
TGAATGAGATGTTTGAGTATAAAACCAATTACAACATGCTTGCTGATCAA
TATGAGCCTTTGGTGAAACGATCAAAATTTGGCAGAGAACGGATGCGTTG
CATGGGTTGTCGGAATTTTCAATTGAAAGTTCAAAGGTTGAATGAAAGCC
AGAAGGGTGAACTTCACAATTCGAGTCAAATAGCAAACGAAAGAATTGCC
GTACTGCTCAGGGAGCGTAATTCATCTCTTGAGCAAGAAAATATGAAATT
GAAAGCCACGATGAAAAAAGGATGTGAAAAATATCAAATTGTTTCAACAC
AAAACCAAGAGCTGAAAAGATGCGAAACTCAATGGCAGCAAAACTTCCGA
CTTGGTTATGACGAATTTGCAAACGAGTATGTTAAAGAACAACTTCGAAG
TCAACTGAATGAGATGTTTGAGTATAAAACCAATTACAACATGCTTGCTG
ATCAATATGAGCCTTTGGTGAAACGATCAAAATTTGGCAGAGAACGGATG
CGTTGCATGGGTTGTCGGAATTTTCAATTGAAAGTTCAAAGGTTGAATGA
AAGCCAGAAGGGTGAACTTCACAATTCGAGTCAAATAGCAAACGAAAGAA
TTGCCGTACTGCTCAGGGAGCGTAATTCATCTCTTGAGCAAGAAAATATG
AAATTGAAAGCCACGATGAAAAAAGGATGTGAAAAATATCAAATTGTTTC
AACACAAAACCAAGAGCTGAAAAGATGCGAAACTCAATGGCAGCAAAACT
TCCGACTTGGTTATGACGAATTTGCAAACGAGTATGTTAAAGAACAACTT
CGAAGTCAACTGAATGAGATGTTTGAGTATAAAACCAATTACAACATGCT
TGCTGATCAATATGAGCCTTTGGTGAAACGATCAAAATTTGGCAGAGAAC
GGATGCGTTGCATGGGTTGTCGGAATTTTCAATTGAAAGTTCAAAGGTTG
AATGAAAGCCAGAAGGGTGAACTTCACAATTCGAGTCAAATAGCAAACGA
AAGAATTGCCGTACTGCTCAGGGAGCGTAATTCATCTCTTGAGCAAGAAA
ATATGAAATTGAAAGCCACGATGAAAAAAGGATGTGAAAAATATCAAATT
GTTTCAACACAAAACCAAGAGCTGAAAAGATGCGAAACTCAATGGCAGCA
AAACTTCCGACTTGGTTATGACGAATTTGCAAACGAGTATGTTAAAGAAC
AACTTCGAAGTCAACTGAATGAGATGTTTGAGTATAAAACCAATTACAAC
ATGCTTGCTGATCAATATGAGCCTTTGGTGAAACGATCAAAATTTGGCAG
AGAACGGATGCGTTGCATGGGTTGTCGGAATTTTCAATTGAAAGTTCAAA
GGTTGAATGAAAGCCAGAAGGGTGAACTTCACAATTCGAGTCAAATAGCA
AACGAAAGAATTGCCGTACTGCTCAGGGAGCGTAATTCATCTCTTGAGCA
AGAAAATATGAAATTGAAAGCCACGATGAAAAAAGGATGTGAAAAATATC
AAATTGTTTCAACACAAAACCAAGAGCTGAAAAGATGCGAAACTCAATGG
CAGCAAAACTTCCGACTTGGTTATGACGAATTTGCAAACGAGTATGTTAA
AGAACAACTTCGAAGTCAACTGAATGAGATGTTTGAGTATAAAACCAATT
ACAACATGCTTGCTGATCAATATGAGCCTTTGGTGAAACGATCAAAATTT
GGCAGAGAACGGATGCGTTGCATGGGTTGTCGGAATTTTCAATTGAAAGT
TCAAAGGTTGAATGAAAGCCAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006182XLOC_006182Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011028-exon-sc0000119-1575043694:223540..223643TCONS_00011028-exon-sc0000119-1575043694:223540..223643Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1575043694:222520..222609TCONS_00011028-exon-sc0000119-1575043694:222520..222609Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1575043694:222184..222267TCONS_00011028-exon-sc0000119-1575043694:222184..222267Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1575043694:221755..221838TCONS_00011028-exon-sc0000119-1575043694:221755..221838Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1575043694:221525..221570TCONS_00011028-exon-sc0000119-1575043694:221525..221570Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1510915933:223540..223643TCONS_00011028-exon-sc0000119-1510915933:223540..223643Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1510915933:222520..222609TCONS_00011028-exon-sc0000119-1510915933:222520..222609Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1510915933:222184..222267TCONS_00011028-exon-sc0000119-1510915933:222184..222267Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1510915933:221755..221838TCONS_00011028-exon-sc0000119-1510915933:221755..221838Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1510915933:221525..221570TCONS_00011028-exon-sc0000119-1510915933:221525..221570Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1491911889:223540..223643TCONS_00011028-exon-sc0000119-1491911889:223540..223643Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1491911889:222520..222609TCONS_00011028-exon-sc0000119-1491911889:222520..222609Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1491911889:222184..222267TCONS_00011028-exon-sc0000119-1491911889:222184..222267Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1491911889:221755..221838TCONS_00011028-exon-sc0000119-1491911889:221755..221838Clytia hemisphaericaexon
TCONS_00011028-exon-sc0000119-1491911889:221525..221570TCONS_00011028-exon-sc0000119-1491911889:221525..221570Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011028-proteinTCONS_00011028-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:221525..223643 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.17828	0.347702	0.605574	1.77738	0.721262	1.1399	0	0.214581	0	0.186088	0	0	0	0	0	0	0	0.137176	0	0	0.517114	0	0	0.185841	0.382823	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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