TCONS_00010959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010959
Unique NameTCONS_00010959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1004

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010959 ID=TCONS_00010959|Name=TCONS_00010959|organism=Clytia hemisphaerica|type=transcript|length=1004bp
AGTTTACCAGGAATTTATTTCCTCTTCAGGGGGTCAAATGTTTTACGATT
TAGTCTTGAATGCGATGGTTTTTACCCCCGCCTATTGAAATTTTTCACGG
GGGATTTGGGTAGTGCCGGAAGCTGTTTTAAGATATAAAGATTTAAAATG
CCGCCGATGCATGTTGACTTTGTCAAAATTTAAGCATACTCAAACTTGTG
AAGGAAAGCCGTAGAGGAGAAGAAATTCCAACTTGCTAAGGAAAGTTTGG
AAGAAGAGAAGAAATTGAACAGCAATGTCTCTTACTGATGATCAATTGGA
GGAACTGAAAGACGCTTTCACACTTTTCGACAAGAAGGGAGATGACAAAG
TCGAGAGTGTACAAATCATCGACATTTTACGATCACTTAAACTAAACCCG
CTGACCTGCGATGTTGAAAAAGTCATCAAAGATTCCGGCTTAGAAGGCAA
TCGTGTCGATTTCCCAACTTTCGCTAGCATTTACGAACAATTCAAGAAAC
GACCTTCGATTGCAAACTATGATGACATGATTGAAATGTTCAAATGTTTT
GATCGTGAAGGAAGTAAAATGGTTTTCGGAGGTGAATTTCGAATGGTTTT
GGTCAACATGGGTGATAATATGAACCAGGAACAGATTGAAAAAATGATCG
CACCCAATGAAAATGCTGATGGGTATATCCCATACGAATCACTATTGGAC
TTTGTTTTGGCAAAGTAAATGAAGCACCAAAATTCCGTGCTCAAAAACCT
TTAATCTGAAATGCCTAAAATAAGAGCCCTGTGGCTGAAAAATTGTAATT
TATATGGAACTATGAGAATTTTCTTTGTACACGCTGTAAAGGGAGTCATT
AATACATGATTGAGTCAATGCATATCTGGCCCTTGTATTGACCATTTGGT
GTATCAATTTCTACCCGATAAAAAGTTATTATATTCTTAGTATTTAACGC
ACGCATATATGTCTTAAAATGATTTGATCAAAATATAGATAATGGTCAGC
CAAA
Run BLAST on NCBI

protein sequence of TCONS_00010959-protein

>TCONS_00010959-protein ID=TCONS_00010959-protein|Name=TCONS_00010959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MSLTDDQLEELKDAFTLFDKKGDDKVESVQIIDILRSLKLNPLTCDVEKV
IKDSGLEGNRVDFPTFASIYEQFKKRPSIANYDDMIEMFKCFDREGSKMV
FGGEFRMVLVNMGDNMNQEQIEKMIAPNENADGYIPYESLLDFVLAK
Run BLAST on NCBI

transcript from alignment at sc0000119:199389..200678+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010959 ID=TCONS_00010959|Name=TCONS_00010959|organism=Clytia hemisphaerica|type=transcript|length=1290bp|location=Sequence derived from alignment at sc0000119:199389..200678+ (Clytia hemisphaerica)
AGTTTACCAGGAATTTATTTCCTCTTCAGGGGGTCAAATGTTTTACGATT
TAGTCTTGAATGCGATGGTTTTTACCCCCGCCTATTGAAATTTTTCACGG
GGGATTTGGGTAGTGCCGGAAGCTGTTTTAAGATATAAAGATTTAAAATG
CCGCCGATGCATGTTGACTTTGTCAAAATTTAAGCATACTCAAACTTGTG
AAGGAAAGCCGTAGAGGAGAAGAAATTCCAACTTGCTAAGGAAAGTTTGG
AAGAAGAGAAGAAATTGAACAGCAATGTCTCTTACTGATGATCAATTGGA
GGAACTGAAAGTAAGTTTTGAAGATTTGAGATCTAAGTTGTGAGTGTGGT
TTGGTTATATCTTCTATGTCTTATAACTCTCATTTTGCGGTTATCTTAAG
AAGAGTTACCTGGCATACCTTTTAATATTGCTCAAGTAATGTGTAAGGCA
ACGCCTCACCAGAGTTGGCAGatgtcgggtatgtgcggccCAGATCTTCG
AAACTCCGGCCCTTTGAGGTATTTTTCTTAGATTCCTCGATTCCCGACAC
CCATTTTTGCCTGAATGGTAGGAAATCAACTGCTTTCAATTTTTAGGACG
CTTTCACACTTTTCGACAAGAAGGGAGATGACAAAGTCGAGAGTGTACAA
ATCATCGACATTTTACGATCACTTAAACTAAACCCGCTGACCTGCGATGT
TGAAAAAGTCATCAAAGATTCCGGCTTAGAAGGCAATCGTGTCGATTTCC
CAACTTTCGCTAGCATTTACGAACAATTCAAGAAACGACCTTCGATTGCA
AACTATGATGACATGATTGAAATGTTCAAATGTTTTGATCGTGAAGGAAG
TAAAATGGTTTTCGGAGGTGAATTTCGAATGGTTTTGGTCAACATGGGTG
ATAATATGAACCAGGAACAGATTGAAAAAATGATCGCACCCAATGAAAAT
GCTGATGGGTATATCCCATACGAATCACTATTGGACTTTGTTTTGGCAAA
GTAAATGAAGCACCAAAATTCCGTGCTCAAAAACCTTTAATCTGAAATGC
CTAAAATAAGAGCCCTGTGGCTGAAAAATTGTAATTTATATGGAACTATG
AGAATTTTCTTTGTACACGCTGTAAAGGGAGTCATTAATACATGATTGAG
TCAATGCATATCTGGCCCTTGTATTGACCATTTGGTGTATCAATTTCTAC
CCGATAAAAAGTTATTATATTCTTAGTATTTAACGCACGCATATATGTCT
TAAAATGATTTGATCAAAATATAGATAATGGTCAGCCAAA

Coding sequence (CDS) from alignment at sc0000119:199389..200678+

>TCONS_00010959 ID=TCONS_00010959|Name=TCONS_00010959|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0000119:199389..200678+ (Clytia hemisphaerica)
ATGTCTCTTACTGATGATCAATTGGAGGAACTGAAAGACGCTTTCACACT
TTTCGACAAGAAGGGAGATGACAAAGTCGAGAGTGTACAAATCATCGACA
TTTTACGATCACTTAAACTAAACCCGCTGACCTGCGATGTTGAAAAAGTC
ATCAAAGATTCCGGCTTAGAAGGCAATCGTGTCGATTTCCCAACTTTCGC
TAGCATTTACGAACAATTCAAGAAACGACCTTCGATTGCAAACTATGATG
ACATGATTGAAATGTTCAAATGTTTTGATCGTGAAGGAAGTAAAATGGTT
TTCGGAGGTGAATTTCGAATGGTTTTGGTCAACATGGGTGATAATATGAA
CCAGGAACAGATTGAAAAAATGATCGCACCCAATGAAAATGCTGATGGGT
ATATCCCATACGAATCACTATTGGACTTTGTTTTGGCAAAGTAAATGTCT
CTTACTGATGATCAATTGGAGGAACTGAAAGACGCTTTCACACTTTTCGA
CAAGAAGGGAGATGACAAAGTCGAGAGTGTACAAATCATCGACATTTTAC
GATCACTTAAACTAAACCCGCTGACCTGCGATGTTGAAAAAGTCATCAAA
GATTCCGGCTTAGAAGGCAATCGTGTCGATTTCCCAACTTTCGCTAGCAT
TTACGAACAATTCAAGAAACGACCTTCGATTGCAAACTATGATGACATGA
TTGAAATGTTCAAATGTTTTGATCGTGAAGGAAGTAAAATGGTTTTCGGA
GGTGAATTTCGAATGGTTTTGGTCAACATGGGTGATAATATGAACCAGGA
ACAGATTGAAAAAATGATCGCACCCAATGAAAATGCTGATGGGTATATCC
CATACGAATCACTATTGGACTTTGTTTTGGCAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006160XLOC_006160Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010959-proteinTCONS_00010959-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010959-exon-sc0000119-1491911889:199389..199698TCONS_00010959-exon-sc0000119-1491911889:199389..199698Clytia hemisphaericaexon
TCONS_00010959-exon-sc0000119-1510915933:199389..199698TCONS_00010959-exon-sc0000119-1510915933:199389..199698Clytia hemisphaericaexon
TCONS_00010959-exon-sc0000119-1575043694:199389..199698TCONS_00010959-exon-sc0000119-1575043694:199389..199698Clytia hemisphaericaexon
TCONS_00010959-exon-sc0000119-1491911889:199985..200678TCONS_00010959-exon-sc0000119-1491911889:199985..200678Clytia hemisphaericaexon
TCONS_00010959-exon-sc0000119-1510915933:199985..200678TCONS_00010959-exon-sc0000119-1510915933:199985..200678Clytia hemisphaericaexon
TCONS_00010959-exon-sc0000119-1575043694:199985..200678TCONS_00010959-exon-sc0000119-1575043694:199985..200678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:199389..200678 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0573739	0	0.0376055	0.0465805	0	0	0.0296794	0	0	0	0.804269	1.46339	0	0	1.87162	1.51539	203.279	218.936	222.933	184.506	0	0.39183	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00010959 vs. Swiss-Prot (Human)
Match: MYL6B (Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.893e-29
Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 2 
Query:  290 DQLEELKDAFTLFDKKGDDKVESVQIIDILRSLKLNPLTCDVEKVI---KDSGLEGNRVDFPTFASIYEQFKKRPSIANYDDMIEMFKCFDREGSKMVFGGEFRMVLVNMGDNMNQEQIEKMIAPNENADGYIPYESLLDFVLA 712
            DQLEE K+AF LFD+ GD K+   Q  D++R+L  NP   +V KV+   K   L+  RVDF TF  + +   K      Y+D +E F+ FD+EG+  V G E R VL  +G+ M +E++E ++A +E+++G I YE+ L  +L+
Sbjct:   64 DQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHILS 207
The following BLAST results are available for this feature:
BLAST of TCONS_00010959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL6B2.893e-2940.28Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=... [more]
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