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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010931 ID=TCONS_00010931|Name=TCONS_00010931|organism=Clytia hemisphaerica|type=transcript|length=2421bpRun BLAST on NCBI protein sequence of TCONS_00010931-protein >TCONS_00010931-protein ID=TCONS_00010931-protein|Name=TCONS_00010931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp QNVGAASSPRVPPERSPPQEAALNTGPTFPKLPNFTLTKEELGLTHIGDLRun BLAST on NCBI transcript from alignment at sc0000118:538222..547838- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010931 ID=TCONS_00010931|Name=TCONS_00010931|organism=Clytia hemisphaerica|type=transcript|length=9617bp|location=Sequence derived from alignment at sc0000118:538222..547838- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000118:538222..547838- >TCONS_00010931 ID=TCONS_00010931|Name=TCONS_00010931|organism=Clytia hemisphaerica|type=CDS|length=16884bp|location=Sequence derived from alignment at sc0000118:538222..547838- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010931 vs. Swiss-Prot (Human)
Match: RHG18 (Rho GTPase-activating protein 18 OS=Homo sapiens GN=ARHGAP18 PE=1 SV=3) HSP 1 Score: 237.269 bits (604), Expect = 5.316e-67 Identity = 173/436 (39.68%), Postives = 250/436 (57.34%), Query Frame = 3
Query: 96 LPNFTLTKEELGLTHIGDLSEPDMSITRRLALIELTALFDQSGVPIKTRRKPNVKLKLKDNGTFGVPLITLCSREESKHNPNVKVPKILLQLIGYXXXXXXXXXXXXXVPGSAHRVKLIREEADKNPDLSTLEWEGRKMTDIATCFKQFLRDLPEPLLTYEYQNTFTSVAEIPDRKXXXXXXXXXXXXXXXXHQECLKKLLVFLNKVIANESSNKMGLNNVAMIMAPNLFFQXX---XXXXXXXXXXXXGMTDVLRMLIKYQLIVWTIPSFMVSQIRFLNEAGAKTKDPKALSKIIKRRRLDSPSHLLNPAIKMTRPXXXXXXXXXXXXXXXXXXIIRVRAPTLNKQSMAIQLSTQTTVAEVVSKFQWQRQKSNKEKDEIDTSRLRIKPRQDNELALVDLYLYEVGGNIGERRLDSSACISAILRENPNAEWVLKS 1394
LP+F L K++ G T IGDL+ DM LALIELTAL+D G+ +K ++ VK+K KD+G F VPL L +++ K P +++P I +LI +E GL EGLLR+PG+A R+K + +E + T WE K D A+ K F+R+LP+PLL+ EY F +V +P +K QLQALNLLV+LLP +++ LK LL FL +VI N+ NKM + NVAM+MAPNLF + + E AAG + + +LIKYQ ++WTIP F+V+Q+R N K KD +A+ K++K+ D + + +IRV+AP L+K SMAIQL+ + ++V+++F Q + L +++LYE+GGNIGER LD + + + NPNAEWV+KS
Sbjct: 261 LPSFRLPKDKTGTTRIGDLAPQDMKKVCHLALIELTALYDVLGIELKQQKA--VKIKTKDSGLFCVPLTALLEQDQRKV-PGMRIPLIFQKLISRIEERGLETEGLLRIPGAAIRIKNLCQELEAKFYEGTFNWESVKQHDAASLLKLFIRELPQPLLSVEYLKAFQAVQNLPTKKQQLQALNLLVILLPDANRDTLKALLEFLQRVIDNKEKNKMTVMNVAMVMAPNLFMCHALGLKSSEQREFVMAAGTANTMHLLIKYQKLLWTIPKFIVNQVRKQNTENHK-KDKRAMKKLLKKMAYDREKY--------------EKQDKSTNDADVPQGVIRVQAPHLSKVSMAIQLTEELKASDVLARFLSQESGVAQ------------------TLKKGEVFLYEIGGNIGERCLDDDTYMKDLYQLNPNAEWVIKS 660 The following BLAST results are available for this feature:
BLAST of TCONS_00010931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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